Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr3.103 Acer truncatum HOM05D003643 ORTHO05D005001 1.1e-133 479.9 246 100.0
Atru.chr1.1970 Acer truncatum HOM05D003643 ORTHO05D005001 2.0e-101 372.9 252 81.7
Cpa.g.sc178.8 Carica papaya HOM05D003643 ORTHO05D005001 8.5e-89 330.9 252 73.0
Ciclev10003667m.g Citrus clementina HOM05D003643 ORTHO05D005001 4.2e-88 328.6 251 72.5
MD05G1254800 Malus domestica HOM05D003643 ORTHO05D005001 1.2e-87 327.0 244 71.7
GSVIVG01012096001 Vitis vinifera HOM05D003643 ORTHO05D005001 2.7e-87 325.9 252 70.2
Cfa023544 Carpinus fangiana HOM05D003643 ORTHO05D005001 3.6e-87 325.5 252 70.2
Sed0017297 Sechium edule HOM05D003643 ORTHO05D005001 3.0e-86 322.4 250 70.8
PGR083G1065 Punica granatum HOM05D003643 ORTHO05D005001 4.0e-86 322.0 246 71.1
Dinv35809 Davidia involucrata HOM05D003643 ORTHO05D005001 1.1e-85 320.5 252 69.4
MD10G1234900 Malus domestica HOM05D003643 ORTHO05D005001 1.1e-85 320.5 244 70.1
Ca_18772_v3 Cicer arietinum L. HOM05D003643 ORTHO05D005001 3.3e-85 318.9 252 70.6
Eucgr.D01040 Eucalyptus grandis HOM05D003643 ORTHO05D005001 3.3e-85 318.9 253 68.8
Phvul.003G000252 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 3.3e-85 318.9 252 68.7
Phvul.L001601 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 3.3e-85 318.9 252 68.7
Phvul.L009001 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 3.3e-85 318.9 252 68.7
Potri.004G075600 Populus trichocarpa HOM05D003643 ORTHO05D005001 3.3e-85 318.9 252 68.7
Prupe.4G109100 Prunus persica HOM05D003643 ORTHO05D005001 3.3e-85 318.9 251 68.1
CANSAT21G2447 Cannabis sativa HOM05D003643 ORTHO05D005001 5.7e-85 318.2 252 69.0
Manes.01G122000 Manihot esculenta HOM05D003643 ORTHO05D005001 5.7e-85 318.2 252 69.0
TWI77G0757 Tripterygium wilfordii HOM05D003643 ORTHO05D005001 9.7e-85 317.4 252 71.0
Glyma.20G021900 Glycine max HOM05D003643 ORTHO05D005001 1.3e-84 317.0 251 67.7
Lj1g0022937 Lotus japonicus HOM05D003643 ORTHO05D005001 1.7e-84 316.6 253 68.8
Lj1g0023184 Lotus japonicus HOM05D003643 ORTHO05D005001 1.7e-84 316.6 253 68.8
Phvul.003G000304 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 1.7e-84 316.6 252 68.3
Psat0s5231g0040 Pisum sativum HOM05D003643 ORTHO05D005001 1.7e-84 316.6 249 69.5
Psat6g043080 Pisum sativum HOM05D003643 ORTHO05D005001 1.7e-84 316.6 249 69.5
VMungo0251G0454 Vigna mungo HOM05D003643 ORTHO05D005001 2.2e-84 316.2 253 68.0
Actinidia22386 Actinidia chinensis HOM05D003643 ORTHO05D005001 2.8e-84 315.8 252 67.5
CsaV3_1G046560 Cucumis sativus L. HOM05D003643 ORTHO05D005001 3.7e-84 315.5 251 68.1
Lalb_Chr16g0385301 Lupinus albus HOM05D003643 ORTHO05D005001 3.7e-84 315.5 250 67.6
Glyma.07G222900 Glycine max HOM05D003643 ORTHO05D005001 6.3e-84 314.7 253 67.6
RcHm_v2.0_Chr5g0019781 Rosa chinensis HOM05D003643 ORTHO05D005001 8.2e-84 314.3 250 68.4
CSS0005005 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D005001 2.4e-83 312.8 252 67.1
Cc09_g06330 Coffea canephora HOM05D003643 ORTHO05D005001 4.1e-83 312.0 251 68.1
vmacro11251 Vaccinium macrocarpon HOM05D003643 ORTHO05D005001 7.0e-83 311.2 252 67.5
CiPaw.03G114100 Carya illinoinensis HOM05D003643 ORTHO05D005001 1.2e-82 310.5 252 66.3
THA.LOC104822105 Tarenaya hassleriana HOM05D003643 ORTHO05D005001 2.0e-82 309.7 244 68.9
FvH4_3g12070 Fragaria vesca HOM05D003643 ORTHO05D005001 5.9e-82 308.1 250 67.2
Lj1C1143T1 Lonicera japonica HOM05D003643 ORTHO05D005001 5.9e-82 308.1 251 66.9
AT5G37340 Arabidopsis thaliana HOM05D003643 ORTHO05D005001 7.7e-82 307.8 247 68.4
A10p18340 Brassica napus HOM05D003643 ORTHO05D005001 7.7e-82 307.8 246 67.9
BraA10t43914Z Brassica rapa HOM05D003643 ORTHO05D005001 7.7e-82 307.8 246 67.9
FAN21G1938 Fragaria x ananassa HOM05D003643 ORTHO05D005001 1.0e-81 307.4 250 67.2
BcaB08g36427 Brassica carinata HOM05D003643 ORTHO05D005001 1.3e-81 307.0 251 66.5
AL7G45920 Arabidopsis lyrata HOM05D003643 ORTHO05D005001 1.7e-81 306.6 247 67.6
Carub.0006s2022 Capsella rubella HOM05D003643 ORTHO05D005001 1.7e-81 306.6 246 67.1
CARHR191050 Cardamine hirsuta HOM05D003643 ORTHO05D005001 2.2e-81 306.2 244 66.0
FAN25G0143 Fragaria x ananassa HOM05D003643 ORTHO05D005001 2.2e-81 306.2 250 67.2
BcaB01g04707 Brassica carinata HOM05D003643 ORTHO05D005001 2.9e-81 305.8 247 67.6
CSS0044821 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D005001 3.8e-81 305.4 243 67.5
CARHR215770 Cardamine hirsuta HOM05D003643 ORTHO05D005001 1.1e-80 303.9 244 66.4
MELO3C021772.2 Cucumis melo HOM05D003643 ORTHO05D005001 1.5e-80 303.5 251 66.5
DCAR_007797 Daucus carota HOM05D003643 ORTHO05D005001 1.5e-80 303.5 252 66.7
Sabra04G0050300 Salix brachista HOM05D003643 ORTHO05D005001 1.9e-80 303.1 252 67.5
Sp6g22770 Schrenkiella parvula HOM05D003643 ORTHO05D005001 1.9e-80 303.1 247 66.0
AL6G33500 Arabidopsis lyrata HOM05D003643 ORTHO05D005001 2.5e-80 302.8 247 67.6
BcaC04g19578 Brassica carinata HOM05D003643 ORTHO05D005001 3.2e-80 302.4 250 65.2
Duzib268G1178 Durio zibethinus HOM05D003643 ORTHO05D005001 3.2e-80 302.4 252 67.9
BcaC01g06578 Brassica carinata HOM05D003643 ORTHO05D005001 4.2e-80 302.0 247 66.8
A03p10790 Brassica napus HOM05D003643 ORTHO05D005001 4.2e-80 302.0 247 67.6
C09p54110 Brassica napus HOM05D003643 ORTHO05D005001 4.2e-80 302.0 250 65.2
BolC9t58281H Brassica oleracea HOM05D003643 ORTHO05D005001 4.2e-80 302.0 250 65.2
Thhalv10013358m.g Eutrema salsugineum HOM05D003643 ORTHO05D005001 5.5e-80 301.6 247 66.4
arahy.Tifrunner.gnm1.ann1.PVMC8E Arachis hypogaea HOM05D003643 ORTHO05D005001 7.2e-80 301.2 252 64.7
Thhalv10027733m.g Eutrema salsugineum HOM05D003643 ORTHO05D005001 9.4e-80 300.8 247 65.6
TPR.G20995 Trifolium pratense HOM05D003643 ORTHO05D005001 9.4e-80 300.8 249 66.7
ClCG01G009340 Citrullus lanatus HOM05D003643 ORTHO05D005001 1.2e-79 300.4 251 65.7
AT5G22480 Arabidopsis thaliana HOM05D003643 ORTHO05D005001 2.1e-79 299.7 247 66.8
BcaB04g18097 Brassica carinata HOM05D003643 ORTHO05D005001 2.1e-79 299.7 244 66.4
CAN.G1222.6 Capsicum annuum HOM05D003643 ORTHO05D005001 2.7e-79 299.3 252 65.1
Solyc02g069120.3 Solanum lycopersicum HOM05D003643 ORTHO05D005001 2.7e-79 299.3 252 64.7
Medtr4g083780 Medicago truncatula HOM05D003643 ORTHO05D005001 6.1e-79 298.1 248 66.5
Thecc.04G162500 Theobroma cacao HOM05D003643 ORTHO05D005001 6.1e-79 298.1 252 68.3
Rhsim04G0157300 Rhododendron simsii HOM05D003643 ORTHO05D005001 8.0e-79 297.7 254 65.7
A08p10150 Brassica napus HOM05D003643 ORTHO05D005001 1.4e-78 297.0 244 66.0
TAR365G0076 Trochodendron aralioides HOM05D003643 ORTHO05D005001 1.4e-78 297.0 244 66.8
Sopen02g018250 Solanum pennellii HOM05D003643 ORTHO05D005001 1.8e-78 296.6 252 64.3
BcaC07g37705 Brassica carinata HOM05D003643 ORTHO05D005001 2.3e-78 296.2 244 66.0
ECA238G3555 Erigeron canadensis HOM05D003643 ORTHO05D005001 2.3e-78 296.2 244 65.6
PGSC0003DMG400010363 Solanum tuberosum HOM05D003643 ORTHO05D005001 4.0e-78 295.4 252 63.9
Gohir.D10G121400 Gossypium hirsutum HOM05D003643 ORTHO05D005001 5.2e-78 295.0 249 66.7
Gorai.011G133500 Gossypium raimondii HOM05D003643 ORTHO05D005001 5.2e-78 295.0 249 66.7
Nitab4.5_0002056g0030 Nicotiana tabacum HOM05D003643 ORTHO05D005001 5.2e-78 295.0 252 63.9
Oeu060347.1 Olea europaea HOM05D003643 ORTHO05D005001 5.2e-78 295.0 237 67.1
SpUn0005_0160 Schrenkiella parvula HOM05D003643 ORTHO05D005001 5.2e-78 295.0 247 65.2
AUR62017342 Chenopodium quinoa HOM05D003643 ORTHO05D005001 8.8e-78 294.3 249 63.9
Lj1g0023481 Lotus japonicus HOM05D003643 ORTHO05D005001 1.2e-77 293.9 246 65.9
Nitab4.5_0004569g0010 Nicotiana tabacum HOM05D003643 ORTHO05D005001 1.2e-77 293.9 252 63.9
BraA08t33014Z Brassica rapa HOM05D003643 ORTHO05D005001 1.5e-77 293.5 248 65.3
SGA_v2.0_scaffold298G47674 Striga asiatica HOM05D003643 ORTHO05D005001 1.5e-77 293.5 262 63.0
BraA03t10388Z Brassica rapa HOM05D003643 ORTHO05D005001 2.6e-77 292.7 258 64.7
Oeu052674.3 Olea europaea HOM05D003643 ORTHO05D005001 4.4e-77 292.0 237 66.2
COL.COLO4_08070 Corchorus olitorius HOM05D003643 ORTHO05D005001 7.5e-77 291.2 291 58.8
AUR62010551 Chenopodium quinoa HOM05D003643 ORTHO05D005001 1.3e-76 290.4 250 63.2
Migut.M01969 Erythranthe guttata HOM05D003643 ORTHO05D005001 3.7e-76 288.9 244 65.2
ECA246G0187 Erigeron canadensis HOM05D003643 ORTHO05D005001 1.8e-75 286.6 244 63.9
BolC3t13712H Brassica oleracea HOM05D003643 ORTHO05D005001 2.4e-75 286.2 250 64.8
Sc22g0000430 Simmondsia chinensis HOM05D003643 ORTHO05D005001 3.1e-75 285.8 252 65.1
FAN16G1159 Fragaria x ananassa HOM05D003643 ORTHO05D005001 7.0e-75 284.6 250 64.4
HanXRQChr14g0433091 Helianthus annuus HOM05D003643 ORTHO05D005001 7.0e-75 284.6 244 63.9
HanXRQChr07g0189641 Helianthus annuus HOM05D003643 ORTHO05D005001 1.6e-74 283.5 245 63.7
Phvul.002G099300 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 1.6e-74 283.5 201 73.6
SalBow8G4557 Salvia bowleyana HOM05D003643 ORTHO05D005001 2.0e-74 283.1 250 63.6
SalBow8G5428 Salvia bowleyana HOM05D003643 ORTHO05D005001 2.0e-74 283.1 250 63.6
CDE02G0779 Ceratophyllum demersum HOM05D003643 ORTHO05D005001 3.8e-73 278.9 254 61.4
unitig_32.g11672 Utricularia gibba HOM05D003643 ORTHO05D005001 5.0e-73 278.5 250 62.8
Lsat_1_v5_gn_5_36401 Lactuca sativa HOM05D003643 ORTHO05D005001 8.5e-73 277.7 247 61.9
TPR.G9485 Trifolium pratense HOM05D003643 ORTHO05D005001 2.1e-71 273.1 247 63.2
Lsat_1_v5_gn_2_29841 Lactuca sativa HOM05D003643 ORTHO05D005001 1.0e-70 270.8 243 61.7
Nn7g37591 Nelumbo nucifera HOM05D003643 ORTHO05D005001 1.4e-70 270.4 254 61.4
Atru.chr8.2585 Acer truncatum HOM05D003643 ORTHO05D005001 8.8e-70 267.7 140 97.9
TPR.G20778 Trifolium pratense HOM05D003643 ORTHO05D005001 2.0e-69 266.5 246 61.8
Pp3c15_5070 Physcomitrium patens HOM05D003643 ORTHO05D005001 5.7e-69 265.0 259 58.7
Phvul.L001739 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 1.7e-68 263.5 259 57.9
arahy.Tifrunner.gnm1.ann1.EU78CH Arachis hypogaea HOM05D003643 ORTHO05D005001 4.9e-68 261.9 246 60.2
MBI07_g18519_MAGBIO Magnolia biondii HOM05D003643 ORTHO05D005001 1.8e-67 260.0 257 57.6
SGA_v2.0_scaffold95G28766 Striga asiatica HOM05D003643 ORTHO05D005001 4.1e-67 258.8 250 59.6
HPP92_015903 Vanilla planifolia HOM05D003643 ORTHO05D005001 7.0e-67 258.1 252 56.7
Os08g0471900 Oryza sativa ssp. japonica HOM05D003643 ORTHO05D005001 3.5e-66 255.8 254 57.1
Ca_20206_v3 Cicer arietinum L. HOM05D003643 ORTHO05D005001 7.7e-66 254.6 245 58.8
Zm00001eb058120 Zea mays HOM05D003643 ORTHO05D005001 1.0e-65 254.2 252 56.7
QL07p008150 Quercus lobata HOM05D003643 ORTHO05D005001 3.8e-65 252.3 409 42.5
PSO675G9021 Papaver somniferum HOM05D003643 ORTHO05D005001 3.3e-64 249.2 252 57.5
Aa31LG9G17620 Aethionema arabicum HOM05D003643 ORTHO05D005001 4.3e-64 248.8 258 57.4
PSO017G1140 Papaver somniferum HOM05D003643 ORTHO05D005001 4.3e-64 248.8 249 57.8
Hund14697 Selenicereus undatus HOM05D003643 ORTHO05D005001 5.6e-64 248.4 261 58.2
Mapoly0085s0072 Marchantia polymorpha HOM05D003643 ORTHO05D005001 1.6e-63 246.9 234 58.5
Haze_13620 Corylus avellana HOM05D003643 ORTHO05D005001 2.0e-61 240.0 185 69.7
ATR0743G136 Amborella trichopoda HOM05D003643 ORTHO05D005001 2.2e-60 236.5 260 52.7
Hund01937 Selenicereus undatus HOM05D003643 ORTHO05D005001 4.9e-60 235.3 247 56.3
EL10Ac5g12673 Beta vulgaris HOM05D003643 ORTHO05D005001 3.2e-59 232.6 301 48.8
CBR_g34896 Chara braunii HOM05D003643 ORTHO05D005001 7.0e-59 231.5 206 59.7
CBR_g6566 Chara braunii HOM05D003643 ORTHO05D005001 7.0e-59 231.5 206 59.7
Aqoxy5G01635 Aquilegia oxysepala HOM05D003643 ORTHO05D005001 6.6e-57 224.9 244 53.7
Ah.12g057940 Amaranthus hybridus HOM05D003643 ORTHO05D005001 1.1e-56 224.2 245 55.1
DCAR_017792 Daucus carota HOM05D003643 ORTHO05D005001 1.5e-56 223.8 194 66.5
SMO203G0021 Selaginella moellendorffii HOM05D003643 ORTHO05D005001 5.2e-54 215.3 233 51.9
Gohir.1Z049309 Gossypium hirsutum HOM05D003643 ORTHO05D005001 4.1e-51 205.7 154 70.8
CBR_g6568 Chara braunii HOM05D003643 ORTHO05D005001 1.2e-50 204.1 205 53.7
Phvul.003G000226 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 1.7e-49 200.3 146 70.5
Peaxi162Scf00128g01142 Petunia axillaris HOM05D003643 ORTHO05D005001 3.3e-48 196.1 252 51.2
Nitab4.5_0002463g0030 Nicotiana tabacum HOM05D003643 ORTHO05D005001 8.1e-47 191.4 252 50.0
Atru.chr8.2696 Acer truncatum HOM05D003643 ORTHO05D005001 1.8e-46 190.3 138 75.4
Peaxi162Scf00149g01022 Petunia axillaris HOM05D003643 ORTHO05D005001 4.4e-45 185.7 162 63.6
Actinidia36045 Actinidia chinensis HOM05D003643 ORTHO05D005001 5.8e-45 185.3 141 66.0
Phvul.L008901 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 6.4e-44 181.8 139 69.8
BolC8t48076H Brassica oleracea HOM05D003643 ORTHO05D005001 1.9e-43 180.3 159 61.6
CSS0009011 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D005001 3.9e-33 146.0 102 75.5
Gohir.1Z049318 Gossypium hirsutum HOM05D003643 ORTHO05D005001 9.9e-29 131.3 102 70.6
CSS0015856 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D005001 4.9e-28 129.0 96 70.8
Phvul.003G000330 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 9.3e-27 124.8 105 64.8
C03p12370 Brassica napus HOM05D003643 ORTHO05D005001 6.9e-22 108.6 98 61.2
Lsat_1_v5_gn_5_36361 Lactuca sativa HOM05D003643 ORTHO05D018815 1.5e-21 107.5 109 56.0
Cfa025656 Carpinus fangiana HOM05D003643 ORTHO05D005001 2.0e-21 107.1 241 32.0
BolC8t48075H Brassica oleracea HOM05D003643 ORTHO05D018815 3.4e-21 106.3 95 64.2
SEGI_34727 Sequoiadendron giganteum HOM05D003643 ORTHO05D005001 4.2e-19 99.4 110 52.7
Atru.chr8.2584 Acer truncatum HOM05D003643 ORTHO05D052132 7.9e-18 95.1 54 92.6
Psat6g162200 Pisum sativum HOM05D003643 ORTHO05D005001 3.3e-16 89.7 128 46.9
Psat3g171960 Pisum sativum HOM05D003643 ORTHO05D005001 1.1e-14 84.7 82 61.0
Peaxi162Scf00149g01017 Petunia axillaris HOM05D003643 ORTHO05D018815 1.8e-14 84.0 89 53.9
HanXRQChr06g0180401 Helianthus annuus HOM05D003643 ORTHO05D005001 6.7e-09 65.5 38 73.7
Phvul.003G000278 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 9.0e-06 55.1 112 29.5


User provided reference genes

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