Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr2.993 Acer truncatum HOM05D005077 ORTHO05D006889 0.0e+00 1229.2 608 100.0
Duzib177G0384 Durio zibethinus HOM05D005077 ORTHO05D006889 4.3e-283 977.6 606 78.1
Cfa006359 Carpinus fangiana HOM05D005077 ORTHO05D006889 1.4e-281 972.6 606 77.6
Thecc.05G270400 Theobroma cacao HOM05D005077 ORTHO05D006889 7.6e-280 966.8 606 77.9
Gorai.007G275500 Gossypium raimondii HOM05D005077 ORTHO05D006889 3.8e-279 964.5 606 77.4
Gohir.D11G257100 Gossypium hirsutum HOM05D005077 ORTHO05D006889 4.9e-279 964.1 606 77.2
CiPaw.07G073200 Carya illinoinensis HOM05D005077 ORTHO05D006889 7.1e-278 960.3 606 76.7
Manes.08G139800 Manihot esculenta HOM05D005077 ORTHO05D006889 3.0e-276 954.9 607 77.4
Cpa.g.sc306.8 Carica papaya HOM05D005077 ORTHO05D006889 1.9e-275 952.2 606 76.6
Potri.013G047400 Populus trichocarpa HOM05D005077 ORTHO05D006889 3.1e-273 944.9 606 77.6
Prupe.6G350500 Prunus persica HOM05D005077 ORTHO05D006889 3.1e-273 944.9 606 77.1
Potri.019G019600 Populus trichocarpa HOM05D005077 ORTHO05D006889 4.0e-273 944.5 606 77.2
CANSAT54G1999 Cannabis sativa HOM05D005077 ORTHO05D006889 5.2e-273 944.1 606 76.2
MD04G1230700 Malus domestica HOM05D005077 ORTHO05D006889 2.9e-271 938.3 606 76.2
TAR362G0145 Trochodendron aralioides HOM05D005077 ORTHO05D006889 4.2e-270 934.5 608 74.8
GSVIVG01023486001 Vitis vinifera HOM05D005077 ORTHO05D006889 1.9e-267 925.6 606 75.6
COL.COLO4_15493 Corchorus olitorius HOM05D005077 ORTHO05D006889 1.1e-265 919.8 622 73.5
FvH4_6g01810 Fragaria vesca HOM05D005077 ORTHO05D006889 6.9e-265 917.1 608 75.2
RcHm_v2.0_Chr3g0449521 Rosa chinensis HOM05D005077 ORTHO05D006889 6.4e-263 910.6 606 74.9
Actinidia39994 Actinidia chinensis HOM05D005077 ORTHO05D006889 3.0e-260 901.7 607 73.3
TWI36G1092 Tripterygium wilfordii HOM05D005077 ORTHO05D006889 2.5e-259 898.7 606 74.4
Lj1g0022218 Lotus japonicus HOM05D005077 ORTHO05D006889 1.5e-256 889.4 606 72.6
Glyma.19G115700 Glycine max HOM05D005077 ORTHO05D006889 9.9e-256 886.7 606 72.4
CSS0033596 Camellia sinensis var. sinensis HOM05D005077 ORTHO05D006889 7.1e-254 880.6 607 72.7
VMungo1383G1518 Vigna mungo HOM05D005077 ORTHO05D006889 2.5e-251 872.1 606 71.3
Phvul.001G114900 Phaseolus vulgaris HOM05D005077 ORTHO05D006889 4.8e-250 867.8 607 71.5
Ciclev10019185m.g Citrus clementina HOM05D005077 ORTHO05D006889 4.0e-249 864.8 530 80.4
Ca_08303_v3 Cicer arietinum L. HOM05D005077 ORTHO05D006889 5.3e-249 864.4 636 68.4
Nn1g02888 Nelumbo nucifera HOM05D005077 ORTHO05D006889 1.5e-248 862.8 609 70.1
Thhalv10020155m.g Eutrema salsugineum HOM05D005077 ORTHO05D006889 1.3e-247 859.8 606 69.3
CARHR078630 Cardamine hirsuta HOM05D005077 ORTHO05D006889 2.2e-247 859.0 606 70.5
FAN14G3018 Fragaria x ananassa HOM05D005077 ORTHO05D006889 2.2e-247 859.0 645 68.8
PGR142G0621 Punica granatum HOM05D005077 ORTHO05D006889 6.5e-247 857.4 606 71.5
FAN09G0372 Fragaria x ananassa HOM05D005077 ORTHO05D006889 8.4e-247 857.1 643 68.9
Medtr7g111650 Medicago truncatula HOM05D005077 ORTHO05D006889 7.1e-246 854.0 606 70.1
Carub.0003s0364 Capsella rubella HOM05D005077 ORTHO05D006889 1.2e-245 853.2 606 69.5
FAN14G2113 Fragaria x ananassa HOM05D005077 ORTHO05D006889 2.7e-245 852.0 646 68.4
BcaB04g19332 Brassica carinata HOM05D005077 ORTHO05D006889 7.9e-245 850.5 606 69.8
Sabra19G0032000 Salix brachista HOM05D005077 ORTHO05D006889 2.3e-244 849.0 691 65.4
AT3G04480 Arabidopsis thaliana HOM05D005077 ORTHO05D006889 3.9e-244 848.2 606 69.3
C05p62770 Brassica napus HOM05D005077 ORTHO05D006889 3.9e-244 848.2 606 69.8
Sed0014730 Sechium edule HOM05D005077 ORTHO05D006889 6.7e-244 847.4 610 70.3
Solyc04g010080.3 Solanum lycopersicum HOM05D005077 ORTHO05D006889 8.7e-244 847.0 612 70.6
Psat3g087440 Pisum sativum HOM05D005077 ORTHO05D006889 1.1e-243 846.7 606 70.0
THA.LOC104827285 Tarenaya hassleriana HOM05D005077 ORTHO05D006889 1.5e-243 846.3 607 69.4
TPR.G4698 Trifolium pratense HOM05D005077 ORTHO05D006889 1.5e-243 846.3 606 69.6
AL3G14430 Arabidopsis lyrata HOM05D005077 ORTHO05D006889 1.9e-243 845.9 606 69.8
BolC5t34930H Brassica oleracea HOM05D005077 ORTHO05D006889 1.9e-243 845.9 606 69.5
Aa31LG5G14920 Aethionema arabicum HOM05D005077 ORTHO05D006889 2.5e-243 845.5 623 68.2
Sopen04g005220 Solanum pennellii HOM05D005077 ORTHO05D006889 5.7e-243 844.3 612 70.3
Sabra13G0043400 Salix brachista HOM05D005077 ORTHO05D006889 2.1e-242 842.4 627 68.4
MELO3C008703.2 Cucumis melo HOM05D005077 ORTHO05D006889 1.4e-241 839.7 611 69.6
BcaC05g29939 Brassica carinata HOM05D005077 ORTHO05D006889 2.4e-241 839.0 606 69.3
BcaC05g30222 Brassica carinata HOM05D005077 ORTHO05D006889 9.0e-241 837.0 606 68.6
BcaC01g04375 Brassica carinata HOM05D005077 ORTHO05D006889 2.9e-239 832.0 612 68.1
C03p40820 Brassica napus HOM05D005077 ORTHO05D006889 2.9e-239 832.0 612 68.1
BraA03t12537Z Brassica rapa HOM05D005077 ORTHO05D006889 2.9e-239 832.0 606 68.8
PGSC0003DMG400011494 Solanum tuberosum HOM05D005077 ORTHO05D006889 1.9e-238 829.3 592 71.5
A05p43000 Brassica napus HOM05D005077 ORTHO05D006889 2.5e-238 828.9 607 67.7
Eucgr.B02151 Eucalyptus grandis HOM05D005077 ORTHO05D006889 4.2e-238 828.2 606 69.0
BraA05t23044Z Brassica rapa HOM05D005077 ORTHO05D006889 5.5e-238 827.8 611 67.6
PSO832G3809 Papaver somniferum HOM05D005077 ORTHO05D006889 9.3e-238 827.0 607 68.9
PSO210G4243 Papaver somniferum HOM05D005077 ORTHO05D006889 1.3e-236 823.2 607 68.4
HanXRQChr14g0454211 Helianthus annuus HOM05D005077 ORTHO05D006889 1.8e-236 822.8 609 67.2
ClCG11G010550 Citrullus lanatus HOM05D005077 ORTHO05D006889 3.0e-236 822.0 610 68.9
A03p33620 Brassica napus HOM05D005077 ORTHO05D006889 5.1e-236 821.2 607 68.4
ECA238G3062 Erigeron canadensis HOM05D005077 ORTHO05D006889 2.5e-235 818.9 610 66.9
Dinv35947 Davidia involucrata HOM05D005077 ORTHO05D006889 4.3e-235 818.1 569 73.3
Rhsim05G0172000 Rhododendron simsii HOM05D005077 ORTHO05D006889 5.7e-235 817.8 630 66.7
Aqoxy5G00195 Aquilegia oxysepala HOM05D005077 ORTHO05D006889 1.6e-234 816.2 611 66.8
MBI10_g13801_MAGBIO Magnolia biondii HOM05D005077 ORTHO05D006889 2.8e-234 815.5 591 69.0
BolC3t16351H Brassica oleracea HOM05D005077 ORTHO05D006889 4.8e-234 814.7 613 67.0
Oeu006006.2 Olea europaea HOM05D005077 ORTHO05D006889 3.4e-232 808.5 611 66.8
EL10Ac9g21459 Beta vulgaris HOM05D005077 ORTHO05D006889 7.7e-232 807.4 608 65.6
Gohir.A11G246900 Gossypium hirsutum HOM05D005077 ORTHO05D006889 1.7e-231 806.2 529 74.1
Sc20g0000660 Simmondsia chinensis HOM05D005077 ORTHO05D006889 1.4e-230 803.1 607 67.1
vmacro19987 Vaccinium macrocarpon HOM05D005077 ORTHO05D006889 3.2e-230 802.0 690 61.0
Migut.F00798 Erythranthe guttata HOM05D005077 ORTHO05D006889 4.2e-230 801.6 609 65.8
SalBow3G3009 Salvia bowleyana HOM05D005077 ORTHO05D006889 7.9e-229 797.3 609 66.3
MSTRG.27374 Avicennia marina HOM05D005077 ORTHO05D006889 2.0e-227 792.7 609 64.9
QL07p018541 Quercus lobata HOM05D005077 ORTHO05D006889 7.4e-227 790.8 523 74.4
Lj2A44T74 Lonicera japonica HOM05D005077 ORTHO05D006889 3.7e-226 788.5 659 62.1
Nitab4.5_0006737g0070 Nicotiana tabacum HOM05D005077 ORTHO05D006889 6.9e-225 784.3 627 64.9
arahy.Tifrunner.gnm1.ann1.2V8KIQ Arachis hypogaea HOM05D005077 ORTHO05D006889 1.5e-224 783.1 606 65.8
ATR0736G030 Amborella trichopoda HOM05D005077 ORTHO05D006889 5.5e-222 774.6 601 65.7
Lsat_1_v5_gn_2_108321 Lactuca sativa HOM05D005077 ORTHO05D006889 7.9e-221 770.8 603 65.7
Hund06905 Selenicereus undatus HOM05D005077 ORTHO05D006889 1.7e-218 763.1 619 63.5
BcaC05g30195 Brassica carinata HOM05D005077 ORTHO05D006889 1.3e-215 753.4 606 64.2
AUR62013106 Chenopodium quinoa HOM05D005077 ORTHO05D006889 1.3e-215 753.4 636 61.5
Lalb_Chr22g0358841 Lupinus albus HOM05D005077 ORTHO05D006889 8.0e-213 744.2 530 69.6
Os02g0810450 Oryza sativa ssp. japonica HOM05D005077 ORTHO05D006889 1.8e-209 733.0 610 62.6
HPP92_014753 Vanilla planifolia HOM05D005077 ORTHO05D006889 1.3e-207 726.9 600 61.2
arahy.Tifrunner.gnm1.ann1.FVV1VG Arachis hypogaea HOM05D005077 ORTHO05D006889 6.3e-202 708.0 623 60.0
DCAR_003547 Daucus carota HOM05D005077 ORTHO05D006889 6.3e-202 708.0 614 60.4
Peaxi162Scf00528g00225 Petunia axillaris HOM05D005077 ORTHO05D006889 9.5e-198 694.1 606 60.7
Hma1.2p1_0114F.1_g055300 Hydrangea macrophylla HOM05D005077 ORTHO05D006889 8.0e-197 691.0 607 60.6
Cc02_g08770 Coffea canephora HOM05D005077 ORTHO05D006889 1.8e-196 689.9 529 66.4
arahy.Tifrunner.gnm1.ann1.BW8NI8 Arachis hypogaea HOM05D005077 ORTHO05D006889 4.1e-193 678.7 618 57.9
CsaV3_2G009810 Cucumis sativus L. HOM05D005077 ORTHO05D006889 3.5e-192 675.6 524 66.0
SGA_v2.0_scaffold1G00651 Striga asiatica HOM05D005077 ORTHO05D006889 5.9e-192 674.9 685 53.7
arahy.Tifrunner.gnm1.ann1.2UET99 Arachis hypogaea HOM05D005077 ORTHO05D006889 1.6e-189 666.8 606 59.1
CAN.G786.40 Capsicum annuum HOM05D005077 ORTHO05D006889 4.7e-189 665.2 540 63.5
Nitab4.5_0003780g0090 Nicotiana tabacum HOM05D005077 ORTHO05D006889 2.7e-184 649.4 605 58.5
Haze_04419 Corylus avellana HOM05D005077 ORTHO05D006889 2.6e-171 606.3 783 46.2
CDE07G0212 Ceratophyllum demersum HOM05D005077 ORTHO05D006889 3.7e-170 602.4 606 53.5
Pp3c11_830 Physcomitrium patens HOM05D005077 ORTHO05D006889 4.3e-166 589.0 589 52.1
AagrBONN_evm.TU.Sc2ySwM_362.1555 Anthoceros agrestis HOM05D005077 ORTHO05D006889 1.6e-165 587.0 592 53.0
CBR_g3613 Chara braunii HOM05D005077 ORTHO05D006889 1.6e-160 570.5 628 50.0
arahy.Tifrunner.gnm1.ann1.CACA61 Arachis hypogaea HOM05D005077 ORTHO05D006889 4.7e-157 558.9 630 51.6
unitig_748.g6990 Utricularia gibba HOM05D005077 ORTHO05D006889 6.9e-156 555.1 616 50.5
SMO348G0068 Selaginella moellendorffii HOM05D005077 ORTHO05D006889 2.0e-155 553.5 553 54.8
Mapoly0027s0145 Marchantia polymorpha HOM05D005077 ORTHO05D006889 2.4e-153 546.6 601 49.6
Oeu041238.1 Olea europaea HOM05D005077 ORTHO05D006889 2.3e-151 540.0 474 59.5
Sp3g03330 Schrenkiella parvula HOM05D005077 ORTHO05D006889 9.9e-147 524.6 425 61.2
Zm00001eb258450 Zea mays HOM05D005077 ORTHO05D006889 1.3e-146 524.2 484 57.9
SEGI_09343 Sequoiadendron giganteum HOM05D005077 ORTHO05D006889 6.5e-130 468.8 394 60.4
Eucgr.B02424 Eucalyptus grandis HOM05D005077 ORTHO05D006889 9.0e-124 448.4 387 59.4
AUR62010111 Chenopodium quinoa HOM05D005077 ORTHO05D006889 1.0e-103 381.7 335 56.4
PGSC0003DMG400019115 Solanum tuberosum HOM05D005077 ORTHO05D006889 4.1e-92 343.2 355 54.6
MCO10G045 Micromonas commoda HOM05D005077 ORTHO05D006889 1.6e-91 341.3 525 38.7
Cre01.g033091 Chlamydomonas reinhardtii HOM05D005077 ORTHO05D006889 7.5e-78 295.8 697 30.4
PRCOL_00005667 Prasinoderma coloniale HOM05D005077 ORTHO05D006889 2.9e-74 283.9 531 36.3
SEGI_03702 Sequoiadendron giganteum HOM05D005077 ORTHO05D006889 6.4e-53 213.0 228 48.7
SEGI_18706 Sequoiadendron giganteum HOM05D005077 ORTHO05D006889 6.4e-53 213.0 228 48.7
Duzib106G1915 Durio zibethinus HOM05D005077 ORTHO05D006889 1.4e-52 211.8 164 62.8
FAN05G0362 Fragaria x ananassa HOM05D005077 ORTHO05D006889 1.9e-52 211.5 147 68.7
SHI22754 Sapria himalayana HOM05D005077 ORTHO05D006889 9.2e-52 209.1 187 64.7
SEGI_01626 Sequoiadendron giganteum HOM05D005077 ORTHO05D006889 1.8e-47 194.9 195 50.8
Cfa026934 Carpinus fangiana HOM05D005077 ORTHO05D006889 2.0e-46 191.4 539 30.8
BcaC01g04372 Brassica carinata HOM05D003677 ORTHO05D004231 1.5e-38 165.2 152 59.2
Lalb_Chr22g0358851 Lupinus albus HOM05D005077 ORTHO05D006889 1.6e-35 155.2 77 94.8
QL07p018546 Quercus lobata HOM05D005077 ORTHO05D006889 1.3e-34 152.1 77 92.2
Cc02_g08780 Coffea canephora HOM05D005077 ORTHO05D006889 2.5e-33 147.9 77 88.3
C08p13010 Brassica napus HOM05D005077 ORTHO05D006889 1.5e-22 112.1 56 92.9
arahy.Tifrunner.gnm1.ann1.TVQ2CS Arachis hypogaea HOM05D005077 ORTHO05D006889 2.9e-21 107.8 176 39.8
BcaC05g29940 Brassica carinata HOM05D005077 ORTHO05D018175 8.2e-16 89.7 191 37.2
Peaxi162Scf00528g00025 Petunia axillaris HOM05D000011 ORTHO05D015719 6.9e-15 86.7 65 61.5
EL10Ac5g11645 Beta vulgaris HOM05D005077 ORTHO05D006889 4.5e-14 84.0 50 72.0
Hund05190 Selenicereus undatus HOM05D005077 ORTHO05D006889 1.3e-08 65.9 56 57.1


User provided reference genes

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