Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr2.967 Acer truncatum HOM05D005617 ORTHO05D006847 2.6e-92 342.0 175 100.0
Ciclev10021517m.g Citrus clementina HOM05D005617 ORTHO05D006847 5.0e-75 284.6 175 80.0
QL03p030835 Quercus lobata HOM05D005617 ORTHO05D006847 1.9e-74 282.7 174 78.7
Dinv07760 Davidia involucrata HOM05D005617 ORTHO05D006847 7.2e-74 280.8 175 79.4
Hma1.2p1_0075F.1_g039170 Hydrangea macrophylla HOM05D005617 ORTHO05D006847 7.9e-73 277.3 175 76.6
CSS0012605 Camellia sinensis var. sinensis HOM05D005617 ORTHO05D006847 1.4e-72 276.6 175 77.1
CANSAT54G2044 Cannabis sativa HOM05D005617 ORTHO05D006847 1.4e-72 276.6 175 78.3
CiPaw.08G118100 Carya illinoinensis HOM05D005617 ORTHO05D006847 2.3e-72 275.8 175 76.6
Sed0027621 Sechium edule HOM05D005617 ORTHO05D006847 5.1e-72 274.6 175 76.0
Thecc.05G271700 Theobroma cacao HOM05D005617 ORTHO05D006847 6.7e-72 274.2 175 77.1
Gohir.D11G314200 Gossypium hirsutum HOM05D005617 ORTHO05D006847 1.1e-71 273.5 175 76.6
MD17G1278900 Malus domestica HOM05D005617 ORTHO05D006847 1.1e-71 273.5 175 78.3
Gohir.A11G299400 Gossypium hirsutum HOM05D005617 ORTHO05D006847 1.5e-71 273.1 175 76.6
PGR142G1895 Punica granatum HOM05D005617 ORTHO05D006847 1.5e-71 273.1 175 77.1
MD09G1286500 Malus domestica HOM05D005617 ORTHO05D006847 2.0e-71 272.7 175 77.7
Prupe.6G349300 Prunus persica HOM05D005617 ORTHO05D006847 2.0e-71 272.7 175 77.1
CsaV3_1G036020 Cucumis sativus L. HOM05D005617 ORTHO05D006847 2.6e-71 272.3 175 76.0
Eucgr.B02145 Eucalyptus grandis HOM05D005617 ORTHO05D006847 2.6e-71 272.3 176 77.8
TAR636G3199 Trochodendron aralioides HOM05D005617 ORTHO05D006847 2.6e-71 272.3 175 76.6
Gorai.007G345400 Gossypium raimondii HOM05D005617 ORTHO05D006847 3.3e-71 271.9 175 76.0
GSVIVG01023530001 Vitis vinifera HOM05D005617 ORTHO05D006847 3.3e-71 271.9 175 76.0
Eucgr.L02949 Eucalyptus grandis HOM05D005617 ORTHO05D006847 4.4e-71 271.6 176 77.3
Oeu012233.2 Olea europaea HOM05D005617 ORTHO05D006847 7.4e-71 270.8 175 74.9
TWI56G1032 Tripterygium wilfordii HOM05D005617 ORTHO05D006847 9.7e-71 270.4 175 77.1
Duzib177G1169 Durio zibethinus HOM05D005617 ORTHO05D006847 1.3e-70 270.0 175 77.1
Manes.08G138800 Manihot esculenta HOM05D005617 ORTHO05D006847 2.2e-70 269.2 175 75.4
COL.COLO4_15469 Corchorus olitorius HOM05D005617 ORTHO05D006847 2.8e-70 268.9 177 75.7
MBI10_g30078_MAGBIO Magnolia biondii HOM05D005617 ORTHO05D006847 6.3e-70 267.7 175 76.6
MSTRG.27377 Avicennia marina HOM05D005617 ORTHO05D006847 8.2e-70 267.3 175 73.1
THA.LOC104805778 Tarenaya hassleriana HOM05D005617 ORTHO05D006847 1.1e-69 266.9 175 75.4
Potri.013G046200 Populus trichocarpa HOM05D005617 ORTHO05D006847 1.4e-69 266.5 175 75.4
SalBow3G1639 Salvia bowleyana HOM05D005617 ORTHO05D006847 1.4e-69 266.5 175 74.3
Cc02_g08910 Coffea canephora HOM05D005617 ORTHO05D006847 1.8e-69 266.2 175 74.9
PSO017G5929 Papaver somniferum HOM05D005617 ORTHO05D006847 3.1e-69 265.4 175 74.3
CAN.G1609.4 Capsicum annuum HOM05D005617 ORTHO05D006847 9.1e-69 263.8 175 76.0
Peaxi162Scf00135g00418 Petunia axillaris HOM05D005617 ORTHO05D006847 1.2e-68 263.5 175 75.4
Sc06g0003230 Simmondsia chinensis HOM05D005617 ORTHO05D006847 1.2e-68 263.5 175 73.1
PGSC0003DMG400011501 Solanum tuberosum HOM05D005617 ORTHO05D006847 1.2e-68 263.5 175 74.3
Solyc04g009940.4 Solanum lycopersicum HOM05D005617 ORTHO05D006847 1.5e-68 263.1 175 73.7
Sopen04g005070 Solanum pennellii HOM05D005617 ORTHO05D006847 1.5e-68 263.1 175 73.7
PSO063G2686 Papaver somniferum HOM05D005617 ORTHO05D006847 2.6e-68 262.3 175 73.7
FAN14G0582 Fragaria x ananassa HOM05D005617 ORTHO05D006847 7.7e-68 260.8 175 72.0
Aqoxy2G03651 Aquilegia oxysepala HOM05D005617 ORTHO05D006847 1.0e-67 260.4 175 73.1
Lj2A41G63 Lonicera japonica HOM05D005617 ORTHO05D006847 2.2e-67 259.2 181 72.4
Lj1g0025948 Lotus japonicus HOM05D005617 ORTHO05D006847 2.2e-67 259.2 175 72.6
HPP92_002964 Vanilla planifolia HOM05D005617 ORTHO05D006847 2.2e-67 259.2 175 71.4
FAN05G5604 Fragaria x ananassa HOM05D001473 ORTHO05D003934 2.9e-67 258.8 174 71.8
FAN05G0714 Fragaria x ananassa HOM05D001473 ORTHO05D003934 3.8e-67 258.5 174 71.8
Lsat_1_v5_gn_2_108021 Lactuca sativa HOM05D005617 ORTHO05D006847 3.8e-67 258.5 175 69.7
ECA238G4125 Erigeron canadensis HOM05D005617 ORTHO05D006847 5.0e-67 258.1 175 70.9
Thhalv10008167m.g Eutrema salsugineum HOM05D005617 ORTHO05D006847 1.9e-66 256.1 175 72.6
RcHm_v2.0_Chr3g0449811 Rosa chinensis HOM05D005617 ORTHO05D006847 1.9e-66 256.1 175 69.7
TPR.G6961 Trifolium pratense HOM05D005617 ORTHO05D006847 1.9e-66 256.1 174 71.8
Glyma.19G248200 Glycine max HOM05D005617 ORTHO05D006847 2.5e-66 255.8 175 70.3
Sp1g07300 Schrenkiella parvula HOM05D005617 ORTHO05D006847 4.2e-66 255.0 175 72.0
Psat3g006600 Pisum sativum HOM05D005617 ORTHO05D006847 5.5e-66 254.6 175 70.3
VMungo0540G0455 Vigna mungo HOM05D005617 ORTHO05D006847 5.5e-66 254.6 175 70.9
AUR62004851 Chenopodium quinoa HOM05D005617 ORTHO05D006847 2.1e-65 252.7 175 71.4
arahy.Tifrunner.gnm1.ann1.X65E39 Arachis hypogaea HOM05D005617 ORTHO05D006847 2.7e-65 252.3 175 69.7
AUR62040935 Chenopodium quinoa HOM05D005617 ORTHO05D006847 2.7e-65 252.3 175 71.4
Lalb_Chr04g0262061 Lupinus albus HOM05D005617 ORTHO05D006847 2.7e-65 252.3 175 70.3
CARHR008550 Cardamine hirsuta HOM05D005617 ORTHO05D006847 3.6e-65 251.9 175 70.3
Phvul.006G105300 Phaseolus vulgaris HOM05D005617 ORTHO05D006847 3.6e-65 251.9 175 69.7
arahy.Tifrunner.gnm1.ann1.9NRB0Q Arachis hypogaea HOM05D005617 ORTHO05D006847 4.7e-65 251.5 175 69.7
EL10Ac4g09040 Beta vulgaris HOM05D005617 ORTHO05D006847 6.1e-65 251.1 175 70.3
Glyma.03G250700 Glycine max HOM05D005617 ORTHO05D006847 6.1e-65 251.1 175 69.7
BcaC05g24795 Brassica carinata HOM05D005617 ORTHO05D006847 8.0e-65 250.8 175 69.7
BolC5t29432H Brassica oleracea HOM05D005617 ORTHO05D006847 8.0e-65 250.8 175 69.7
HanXRQChr14g0455191 Helianthus annuus HOM05D005617 ORTHO05D006847 1.0e-64 250.4 175 71.4
DCAR_023096 Daucus carota HOM05D005617 ORTHO05D006847 1.8e-64 249.6 175 70.9
unitig_32.g10679 Utricularia gibba HOM05D005617 ORTHO05D006847 1.8e-64 249.6 175 71.4
BraA06t23768Z Brassica rapa HOM05D005617 ORTHO05D006847 3.9e-64 248.4 175 69.1
BcaB07g34105 Brassica carinata HOM05D005617 ORTHO05D006847 5.2e-64 248.1 175 69.7
Migut.F00803 Erythranthe guttata HOM05D005617 ORTHO05D006847 6.7e-64 247.7 176 70.5
C05p06720 Brassica napus HOM05D005617 ORTHO05D006847 2.6e-63 245.7 175 68.0
Carub.0001s0800 Capsella rubella HOM05D005617 ORTHO05D006847 2.6e-63 245.7 175 69.1
AL1G19070 Arabidopsis lyrata HOM05D005617 ORTHO05D006847 5.7e-63 244.6 175 70.3
Nitab4.5_0003780g0030 Nicotiana tabacum HOM05D005617 ORTHO05D006847 5.7e-63 244.6 154 77.9
Actinidia34747 Actinidia chinensis HOM05D005617 ORTHO05D006847 7.4e-63 244.2 175 66.9
Nitab4.5_0003768g0040 Nicotiana tabacum HOM05D005617 ORTHO05D006847 7.4e-63 244.2 154 77.9
Potri.019G018300 Populus trichocarpa HOM05D005617 ORTHO05D006847 9.7e-63 243.8 154 77.3
Rhsim09G0137600 Rhododendron simsii HOM05D005617 ORTHO05D006847 1.3e-62 243.4 175 69.1
AT1G08640 Arabidopsis thaliana HOM05D005617 ORTHO05D006847 2.2e-62 242.7 175 69.7
BcaB03g13320 Brassica carinata HOM05D005617 ORTHO05D006847 3.1e-61 238.8 175 69.1
Cfa006341 Carpinus fangiana HOM05D005617 ORTHO05D006548 1.3e-59 233.4 142 78.2
FAN14G1026 Fragaria x ananassa HOM05D001473 ORTHO05D003934 1.3e-59 233.4 154 72.7
Medtr7g115670 Medicago truncatula HOM05D005617 ORTHO05D006847 4.2e-58 228.4 154 72.1
Ah.06g191860 Amaranthus hybridus HOM05D005617 ORTHO05D006847 1.2e-57 226.9 154 71.4
Sabra13G0042400 Salix brachista HOM05D005617 ORTHO05D006847 1.2e-57 226.9 182 64.8
Aa31sc110G20 Aethionema arabicum HOM05D005617 ORTHO05D006847 5.2e-56 221.5 154 69.5
ATR0736G212 Amborella trichopoda HOM05D005617 ORTHO05D006847 1.2e-55 220.3 155 68.4
A06p05600 Brassica napus HOM05D005617 ORTHO05D006847 1.5e-55 219.9 154 69.5
SEGI_39921 Sequoiadendron giganteum HOM05D005617 ORTHO05D006847 2.8e-54 215.7 175 58.3
Haze_04439 Corylus avellana HOM05D005617 ORTHO05D006847 1.1e-53 213.8 130 78.5
Zm00001eb261540 Zea mays HOM05D005617 ORTHO05D006847 2.4e-53 212.6 175 58.3
ClCG03G000920 Citrullus lanatus HOM05D005617 ORTHO05D006847 5.4e-53 211.5 130 78.5
Os08g0127600 Oryza sativa ssp. japonica HOM05D005617 ORTHO05D006847 2.0e-52 209.5 175 58.9
FAN02G1215 Fragaria x ananassa HOM05D001473 ORTHO05D003934 4.5e-52 208.4 137 72.3
Hund22155 Selenicereus undatus HOM05D005617 ORTHO05D006847 6.5e-51 204.5 175 61.1
FvH4_6g01960 Fragaria vesca HOM05D005617 ORTHO05D006847 4.2e-50 201.8 136 73.5
Os10g0478100 Oryza sativa ssp. japonica HOM05D005617 ORTHO05D006847 1.2e-49 200.3 175 54.9
CDE04G1987 Ceratophyllum demersum HOM05D005617 ORTHO05D006847 1.6e-49 199.9 176 63.1
FAN09G1753 Fragaria x ananassa HOM05D001473 ORTHO05D003934 1.0e-48 197.2 149 67.8
MELO3C020566.2 Cucumis melo HOM05D005617 ORTHO05D006847 1.8e-48 196.4 183 60.1
SMO116G0251 Selaginella moellendorffii HOM05D005617 ORTHO05D006847 1.6e-44 183.3 178 51.1
CDE04G2248 Ceratophyllum demersum HOM05D005617 ORTHO05D006847 1.9e-42 176.4 112 75.9
Nn1g08261 Nelumbo nucifera HOM05D005617 ORTHO05D006847 7.2e-42 174.5 126 71.4
Mapoly0036s0041 Marchantia polymorpha HOM05D005617 ORTHO05D006847 9.5e-42 174.1 176 52.8
SGA_v2.0_scaffold380G50362 Striga asiatica HOM05D005617 ORTHO05D006847 2.1e-41 172.9 138 63.8
Pp3c23_15250 Physcomitrium patens HOM05D005617 ORTHO05D006847 8.9e-40 167.5 186 50.0
AagrBONN_evm.TU.Sc2ySwM_344.3205 Anthoceros agrestis HOM05D005617 ORTHO05D006847 7.5e-39 164.5 175 45.7
Zm00001eb173360 Zea mays HOM05D005617 ORTHO05D006847 9.8e-39 164.1 130 60.0
Ca_09461_v3 Cicer arietinum L. HOM05D005617 ORTHO05D006847 2.4e-37 159.5 97 77.3
TAR365G0454 Trochodendron aralioides HOM05D005617 ORTHO05D006847 4.1e-37 158.7 160 54.4
Sabra19G0030400 Salix brachista HOM05D001473 ORTHO05D003934 1.6e-36 156.8 130 65.4
C08p12050 Brassica napus HOM05D005617 ORTHO05D006847 1.9e-34 149.8 168 52.4
vmacro10358 Vaccinium macrocarpon HOM05D005617 ORTHO05D006847 1.0e-32 144.1 190 42.1
BcaC07g38407 Brassica carinata HOM05D005617 ORTHO05D006847 1.5e-31 140.2 134 54.5
C08p11620 Brassica napus HOM05D005617 ORTHO05D006847 1.3e-27 127.1 82 70.7
C08p11650 Brassica napus HOM05D005617 ORTHO05D006847 1.1e-26 124.0 82 69.5
C08p11690 Brassica napus HOM05D005617 ORTHO05D006847 1.9e-26 123.2 82 68.3
Cpa.g.c45301 Carica papaya HOM05D005617 ORTHO05D006847 3.3e-26 122.5 74 78.4
BolC8t48841H Brassica oleracea HOM05D005617 ORTHO05D006847 3.4e-23 112.5 83 66.3
CBR_g63068 Chara braunii HOM05D005617 ORTHO05D006847 3.0e-19 99.4 176 35.2
Cpa.g.sc162.39 Carica papaya HOM05D005617 ORTHO05D006847 7.3e-18 94.7 56 80.4
TPR.G11236 Trifolium pratense HOM05D005617 ORTHO05D006847 1.6e-12 77.0 50 70.0
PRCOL_00005829 Prasinoderma coloniale HOM05D005617 ORTHO05D006847 3.5e-12 75.9 176 29.5
BcaB01g02218 Brassica carinata HOM05D005617 ORTHO05D006847 8.6e-11 71.2 52 67.3
SHI23140 Sapria himalayana HOM05D005617 ORTHO05D001257 1.5e-10 70.5 53 56.6


User provided reference genes

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