Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr2.966 Acer truncatum HOM05D005617 ORTHO05D006847 2.6e-65 251.9 129 100.0
Ciclev10021517m.g Citrus clementina HOM05D005617 ORTHO05D006847 6.6e-16 87.8 54 85.2
Haze_04439 Corylus avellana HOM05D005617 ORTHO05D006847 3.6e-14 82.0 51 76.5
Cfa006341 Carpinus fangiana HOM05D005617 ORTHO05D006548 6.2e-14 81.3 54 75.9
CiPaw.08G118100 Carya illinoinensis HOM05D005617 ORTHO05D006847 6.2e-14 81.3 54 75.9
Hma1.2p1_0075F.1_g039170 Hydrangea macrophylla HOM05D005617 ORTHO05D006847 6.2e-14 81.3 65 67.7
GSVIVG01023530001 Vitis vinifera HOM05D005617 ORTHO05D006847 1.1e-13 80.5 54 75.9
Ah.06g191860 Amaranthus hybridus HOM05D005617 ORTHO05D006847 1.4e-13 80.1 55 72.7
EL10Ac4g09040 Beta vulgaris HOM05D005617 ORTHO05D006847 1.4e-13 80.1 64 65.6
Manes.08G138800 Manihot esculenta HOM05D005617 ORTHO05D006847 2.3e-13 79.3 54 77.8
HanXRQChr14g0455191 Helianthus annuus HOM05D005617 ORTHO05D006847 3.1e-13 79.0 54 75.9
PGR142G1895 Punica granatum HOM05D005617 ORTHO05D006847 3.1e-13 79.0 54 74.1
Dinv07760 Davidia involucrata HOM05D005617 ORTHO05D006847 5.2e-13 78.2 54 74.1
Sc06g0003230 Simmondsia chinensis HOM05D005617 ORTHO05D006847 5.2e-13 78.2 55 70.9
Glyma.03G250700 Glycine max HOM05D005617 ORTHO05D006847 6.8e-13 77.8 61 72.1
Glyma.19G248200 Glycine max HOM05D005617 ORTHO05D006847 6.8e-13 77.8 61 72.1
ECA238G4125 Erigeron canadensis HOM05D005617 ORTHO05D006847 8.9e-13 77.4 54 74.1
Migut.F00803 Erythranthe guttata HOM05D005617 ORTHO05D006847 8.9e-13 77.4 65 63.1
Eucgr.L02949 Eucalyptus grandis HOM05D005617 ORTHO05D006847 8.9e-13 77.4 54 72.2
MD09G1286500 Malus domestica HOM05D005617 ORTHO05D006847 8.9e-13 77.4 54 74.1
PSO063G2686 Papaver somniferum HOM05D005617 ORTHO05D006847 8.9e-13 77.4 54 72.2
Prupe.6G349300 Prunus persica HOM05D005617 ORTHO05D006847 8.9e-13 77.4 54 74.1
ClCG03G000920 Citrullus lanatus HOM05D005617 ORTHO05D006847 1.2e-12 77.0 54 74.1
MELO3C020566.2 Cucumis melo HOM05D005617 ORTHO05D006847 1.2e-12 77.0 54 74.1
CsaV3_1G036020 Cucumis sativus L. HOM05D005617 ORTHO05D006847 1.2e-12 77.0 54 74.1
Ca_09461_v3 Cicer arietinum L. HOM05D005617 ORTHO05D006847 1.5e-12 76.6 54 74.1
PSO017G5929 Papaver somniferum HOM05D005617 ORTHO05D006847 1.5e-12 76.6 54 70.4
TAR636G3199 Trochodendron aralioides HOM05D005617 ORTHO05D006847 1.5e-12 76.6 64 65.6
Cc02_g08910 Coffea canephora HOM05D005617 ORTHO05D006847 2.0e-12 76.3 55 69.1
MD17G1278900 Malus domestica HOM05D005617 ORTHO05D006847 2.0e-12 76.3 54 72.2
Eucgr.B02145 Eucalyptus grandis HOM05D005617 ORTHO05D006847 2.6e-12 75.9 54 70.4
Lsat_1_v5_gn_2_108021 Lactuca sativa HOM05D005617 ORTHO05D006847 2.6e-12 75.9 54 72.2
Peaxi162Scf00135g00418 Petunia axillaris HOM05D005617 ORTHO05D006847 2.6e-12 75.9 54 70.4
Solyc04g009940.4 Solanum lycopersicum HOM05D005617 ORTHO05D006847 3.4e-12 75.5 54 68.5
Sopen04g005070 Solanum pennellii HOM05D005617 ORTHO05D006847 3.4e-12 75.5 54 68.5
PGSC0003DMG400011501 Solanum tuberosum HOM05D005617 ORTHO05D006847 3.4e-12 75.5 54 68.5
CAN.G1609.4 Capsicum annuum HOM05D005617 ORTHO05D006847 4.4e-12 75.1 54 68.5
Lj2A41G63 Lonicera japonica HOM05D005617 ORTHO05D006847 4.4e-12 75.1 54 72.2
Oeu012233.2 Olea europaea HOM05D005617 ORTHO05D006847 4.4e-12 75.1 55 67.3
arahy.Tifrunner.gnm1.ann1.9NRB0Q Arachis hypogaea HOM05D005617 ORTHO05D006847 5.8e-12 74.7 54 72.2
arahy.Tifrunner.gnm1.ann1.X65E39 Arachis hypogaea HOM05D005617 ORTHO05D006847 5.8e-12 74.7 54 72.2
MBI10_g30078_MAGBIO Magnolia biondii HOM05D005617 ORTHO05D006847 7.5e-12 74.3 54 68.5
Aqoxy2G03651 Aquilegia oxysepala HOM05D005617 ORTHO05D006847 9.8e-12 73.9 54 68.5
Nitab4.5_0003768g0040 Nicotiana tabacum HOM05D005617 ORTHO05D006847 9.8e-12 73.9 54 68.5
Nitab4.5_0003780g0030 Nicotiana tabacum HOM05D005617 ORTHO05D006847 9.8e-12 73.9 54 68.5
Potri.019G018300 Populus trichocarpa HOM05D005617 ORTHO05D006847 9.8e-12 73.9 54 72.2
SalBow3G1639 Salvia bowleyana HOM05D005617 ORTHO05D006847 1.3e-11 73.6 55 65.5
CSS0012605 Camellia sinensis var. sinensis HOM05D005617 ORTHO05D006847 2.2e-11 72.8 54 66.7
unitig_32.g10679 Utricularia gibba HOM05D005617 ORTHO05D006847 2.2e-11 72.8 55 63.6
AUR62004851 Chenopodium quinoa HOM05D005617 ORTHO05D006847 2.9e-11 72.4 55 63.6
Phvul.006G105300 Phaseolus vulgaris HOM05D005617 ORTHO05D006847 2.9e-11 72.4 54 70.4
Psat3g006600 Pisum sativum HOM05D005617 ORTHO05D006847 2.9e-11 72.4 54 68.5
MSTRG.27377 Avicennia marina HOM05D005617 ORTHO05D006847 3.7e-11 72.0 55 61.8
Potri.013G046200 Populus trichocarpa HOM05D005617 ORTHO05D006847 3.7e-11 72.0 54 70.4
Hund22155 Selenicereus undatus HOM05D005617 ORTHO05D006847 3.7e-11 72.0 55 63.6
Actinidia34747 Actinidia chinensis HOM05D005617 ORTHO05D006847 4.9e-11 71.6 54 64.8
Nn1g08261 Nelumbo nucifera HOM05D005617 ORTHO05D006847 4.9e-11 71.6 54 64.8
Sed0027621 Sechium edule HOM05D005617 ORTHO05D006847 4.9e-11 71.6 54 68.5
VMungo0540G0455 Vigna mungo HOM05D005617 ORTHO05D006847 4.9e-11 71.6 54 68.5
Lj1g0025948 Lotus japonicus HOM05D005617 ORTHO05D006847 6.4e-11 71.2 61 63.9
RcHm_v2.0_Chr3g0449811 Rosa chinensis HOM05D005617 ORTHO05D006847 6.4e-11 71.2 54 70.4
Medtr7g115670 Medicago truncatula HOM05D005617 ORTHO05D006847 8.3e-11 70.9 54 68.5
TWI56G1032 Tripterygium wilfordii HOM05D005617 ORTHO05D006847 1.1e-10 70.5 54 64.8
ATR0736G212 Amborella trichopoda HOM05D005617 ORTHO05D006847 1.4e-10 70.1 54 63.0
Lalb_Chr04g0262061 Lupinus albus HOM05D005617 ORTHO05D006847 1.4e-10 70.1 54 68.5
TPR.G6961 Trifolium pratense HOM05D005617 ORTHO05D006847 1.4e-10 70.1 62 61.3
Cpa.g.sc162.39 Carica papaya HOM05D005617 ORTHO05D006847 1.9e-10 69.7 54 63.0
COL.COLO4_15469 Corchorus olitorius HOM05D005617 ORTHO05D006847 2.4e-10 69.3 54 68.5
Duzib177G1169 Durio zibethinus HOM05D005617 ORTHO05D006847 2.4e-10 69.3 54 68.5
Gohir.A11G299400 Gossypium hirsutum HOM05D005617 ORTHO05D006847 2.4e-10 69.3 54 68.5
QL03p030835 Quercus lobata HOM05D005617 ORTHO05D006847 2.4e-10 69.3 54 64.8
Thecc.05G271700 Theobroma cacao HOM05D005617 ORTHO05D006847 2.4e-10 69.3 54 68.5
CDE04G1987 Ceratophyllum demersum HOM05D005617 ORTHO05D006847 3.2e-10 68.9 54 61.1
HPP92_002964 Vanilla planifolia HOM05D005617 ORTHO05D006847 4.1e-10 68.6 61 59.0
SGA_v2.0_scaffold380G50362 Striga asiatica HOM05D005617 ORTHO05D006847 5.4e-10 68.2 55 58.2
CANSAT54G2044 Cannabis sativa HOM05D005617 ORTHO05D006847 7.0e-10 67.8 54 64.8
Gohir.D11G314200 Gossypium hirsutum HOM05D005617 ORTHO05D006847 9.2e-10 67.4 54 64.8
Gorai.007G345400 Gossypium raimondii HOM05D005617 ORTHO05D006847 9.2e-10 67.4 54 64.8
Sabra13G0042400 Salix brachista HOM05D005617 ORTHO05D006847 2.0e-09 66.2 49 63.3
DCAR_023096 Daucus carota HOM05D005617 ORTHO05D006847 3.5e-09 65.5 54 64.8
BcaC05g24795 Brassica carinata HOM05D005617 ORTHO05D006847 4.6e-09 65.1 54 63.0
A06p05600 Brassica napus HOM05D005617 ORTHO05D006847 4.6e-09 65.1 54 63.0
C05p06720 Brassica napus HOM05D005617 ORTHO05D006847 4.6e-09 65.1 54 63.0
BolC5t29432H Brassica oleracea HOM05D005617 ORTHO05D006847 4.6e-09 65.1 54 63.0
BraA06t23768Z Brassica rapa HOM05D005617 ORTHO05D006847 4.6e-09 65.1 54 63.0
Mapoly0036s0041 Marchantia polymorpha HOM05D005617 ORTHO05D006847 4.6e-09 65.1 54 61.1
Carub.0001s0800 Capsella rubella HOM05D005617 ORTHO05D006847 6.0e-09 64.7 54 63.0
SMO116G0251 Selaginella moellendorffii HOM05D005617 ORTHO05D006847 6.0e-09 64.7 54 57.4
SEGI_39921 Sequoiadendron giganteum HOM05D005617 ORTHO05D006847 7.8e-09 64.3 61 55.7
FAN05G0714 Fragaria x ananassa HOM05D001473 ORTHO05D003934 1.3e-08 63.5 54 61.1
FAN05G5604 Fragaria x ananassa HOM05D001473 ORTHO05D003934 1.3e-08 63.5 54 61.1
FAN09G1753 Fragaria x ananassa HOM05D001473 ORTHO05D003934 1.3e-08 63.5 54 61.1
FAN14G0582 Fragaria x ananassa HOM05D005617 ORTHO05D006847 1.3e-08 63.5 54 61.1
Sp1g07300 Schrenkiella parvula HOM05D005617 ORTHO05D006847 1.3e-08 63.5 54 61.1
THA.LOC104805778 Tarenaya hassleriana HOM05D005617 ORTHO05D006847 1.3e-08 63.5 54 61.1
Aa31sc110G20 Aethionema arabicum HOM05D005617 ORTHO05D006847 1.7e-08 63.2 61 57.4
AL1G19070 Arabidopsis lyrata HOM05D005617 ORTHO05D006847 1.7e-08 63.2 54 61.1
AT1G08640 Arabidopsis thaliana HOM05D005617 ORTHO05D006847 1.7e-08 63.2 54 61.1
BcaB03g13320 Brassica carinata HOM05D005617 ORTHO05D006847 1.7e-08 63.2 54 61.1
BcaB07g34105 Brassica carinata HOM05D005617 ORTHO05D006847 1.7e-08 63.2 54 61.1
FvH4_6g01860 Fragaria vesca HOM05D005617 ORTHO05D006847 1.7e-08 63.2 50 60.0
FAN14G4186 Fragaria x ananassa HOM05D005617 ORTHO05D006847 1.7e-08 63.2 50 60.0
FAN14G5978 Fragaria x ananassa HOM05D005617 ORTHO05D006847 1.7e-08 63.2 50 60.0
FvH4_6g01960 Fragaria vesca HOM05D005617 ORTHO05D006847 2.3e-08 62.8 54 61.1
FAN14G1026 Fragaria x ananassa HOM05D001473 ORTHO05D003934 2.3e-08 62.8 54 61.1
FAN14G3066 Fragaria x ananassa HOM05D005617 ORTHO05D006847 3.0e-08 62.4 50 60.0
CARHR008550 Cardamine hirsuta HOM05D005617 ORTHO05D006847 3.9e-08 62.0 54 59.3
Rhsim09G0137600 Rhododendron simsii HOM05D005617 ORTHO05D006847 3.9e-08 62.0 54 53.7
Thhalv10008167m.g Eutrema salsugineum HOM05D005617 ORTHO05D006847 6.6e-08 61.2 54 59.3
FAN09G3889 Fragaria x ananassa HOM05D005617 ORTHO05D006847 6.6e-08 61.2 50 58.0
vmacro10358 Vaccinium macrocarpon HOM05D005617 ORTHO05D006847 6.6e-08 61.2 54 57.4
Pp3c23_15250 Physcomitrium patens HOM05D005617 ORTHO05D006847 8.6e-08 60.8 54 51.9
TPR.G6979 Trifolium pratense HOM05D005617 ORTHO05D006847 1.9e-07 59.7 50 54.0
AagrBONN_evm.TU.Sc2ySwM_344.3205 Anthoceros agrestis HOM05D005617 ORTHO05D006847 4.3e-07 58.5 61 52.5
TPR.G11236 Trifolium pratense HOM05D005617 ORTHO05D006847 5.6e-07 58.2 50 50.0
Os10g0478100 Oryza sativa ssp. japonica HOM05D005617 ORTHO05D006847 1.6e-06 56.6 65 44.6
Rhsim04G0044500 Rhododendron simsii HOM05D005617 ORTHO05D000521 1.6e-06 56.6 50 50.0
TPR.G21937 Trifolium pratense HOM05D005617 ORTHO05D006847 3.6e-06 55.5 53 58.5
Os08g0127600 Oryza sativa ssp. japonica HOM05D005617 ORTHO05D006847 6.2e-06 54.7 54 46.3


User provided reference genes

Program Settings