Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr2.852 Acer truncatum HOM05D005123 ORTHO05D006532 1.3e-81 306.2 144 100.0
Atru.BG.126.p Acer truncatum HOM05D005123 ORTHO05D006532 2.3e-65 252.3 139 86.3
vmacro13816 Vaccinium macrocarpon HOM05D005123 ORTHO05D006532 2.0e-58 229.2 139 74.8
Gohir.D11G185600 Gossypium hirsutum HOM05D005123 ORTHO05D006532 3.5e-58 228.4 146 70.5
TAR365G0219 Trochodendron aralioides HOM05D005123 ORTHO05D006532 7.8e-58 227.3 139 72.7
Gorai.004G247100 Gossypium raimondii HOM05D005123 ORTHO05D006532 1.0e-57 226.9 139 74.1
Gohir.D02G179700 Gossypium hirsutum HOM05D005123 ORTHO05D006532 1.3e-57 226.5 139 73.4
GSVIVG01036232001 Vitis vinifera HOM05D005123 ORTHO05D006532 1.3e-57 226.5 139 73.4
Gohir.D08G232600 Gossypium hirsutum HOM05D005123 ORTHO05D006532 1.7e-57 226.1 139 73.4
Sabra05G0048700 Salix brachista HOM05D005123 ORTHO05D006532 1.7e-57 226.1 139 74.8
Potri.005G055800 Populus trichocarpa HOM05D005123 ORTHO05D006532 3.8e-57 224.9 139 74.1
Cfa006396 Carpinus fangiana HOM05D005123 ORTHO05D006532 1.5e-56 223.0 139 72.7
Cpa.g.sc736.2 Carica papaya HOM05D005123 ORTHO05D006532 2.5e-56 222.2 139 73.4
Gohir.A13G075900 Gossypium hirsutum HOM05D005123 ORTHO05D006532 2.5e-56 222.2 124 77.4
FvH4_4g17540 Fragaria vesca HOM05D005123 ORTHO05D006532 3.3e-56 221.9 139 71.2
FAN12G0393 Fragaria x ananassa HOM05D005123 ORTHO05D006532 3.3e-56 221.9 139 71.2
FAN12G0908 Fragaria x ananassa HOM05D005123 ORTHO05D006532 3.3e-56 221.9 139 71.2
Gohir.A08G216000 Gossypium hirsutum HOM05D005123 ORTHO05D006532 4.3e-56 221.5 139 71.9
CSS0014237 Camellia sinensis var. sinensis HOM05D005123 ORTHO05D006532 5.6e-56 221.1 136 71.3
CSS0032730 Camellia sinensis var. sinensis HOM05D005123 ORTHO05D006532 5.6e-56 221.1 136 71.3
Gohir.D01G029000 Gossypium hirsutum HOM05D005123 ORTHO05D006532 7.3e-56 220.7 124 76.6
Gohir.D08G124750 Gossypium hirsutum HOM05D005123 ORTHO05D006532 7.3e-56 220.7 124 76.6
Manes.08G136400 Manihot esculenta HOM05D005123 ORTHO05D006532 7.3e-56 220.7 139 71.2
Dinv17936 Davidia involucrata HOM05D005123 ORTHO05D006532 1.6e-55 219.5 125 75.2
Prupe.6G345400 Prunus persica HOM05D005123 ORTHO05D006532 1.6e-55 219.5 139 71.9
Actinidia18366 Actinidia chinensis HOM05D005123 ORTHO05D006532 2.1e-55 219.2 139 71.2
QL03p027727 Quercus lobata HOM05D005123 ORTHO05D006532 2.1e-55 219.2 124 77.4
THA.LOC104802845 Tarenaya hassleriana HOM05D005123 ORTHO05D006532 3.6e-55 218.4 139 70.5
Eucgr.H04317 Eucalyptus grandis HOM05D005123 ORTHO05D006532 4.7e-55 218.0 139 71.2
COL.COLO4_15380 Corchorus olitorius HOM05D005123 ORTHO05D006532 6.1e-55 217.6 139 71.2
Thecc.05G280500 Theobroma cacao HOM05D005123 ORTHO05D006532 8.0e-55 217.2 139 71.9
Sopen01g040830 Solanum pennellii HOM05D005123 ORTHO05D006532 1.8e-54 216.1 139 70.5
Sed0022916 Sechium edule HOM05D005123 ORTHO05D006532 2.3e-54 215.7 139 69.1
Haze_04379 Corylus avellana HOM05D005123 ORTHO05D006532 3.0e-54 215.3 125 74.4
Solyc01g097160.3 Solanum lycopersicum HOM05D005123 ORTHO05D006532 4.0e-54 214.9 139 69.8
Aqoxy5G00319 Aquilegia oxysepala HOM05D005123 ORTHO05D006532 5.2e-54 214.5 139 68.3
FAN07G0296 Fragaria x ananassa HOM05D005123 ORTHO05D006532 5.2e-54 214.5 139 69.1
Hma1.2p1_0817F.1_g223190 Hydrangea macrophylla HOM05D005123 ORTHO05D006532 5.2e-54 214.5 139 70.5
RcHm_v2.0_Chr4g0421451 Rosa chinensis HOM05D005123 ORTHO05D006532 8.9e-54 213.8 139 69.1
Duzib177G0775 Durio zibethinus HOM05D005123 ORTHO05D006532 2.6e-53 212.2 126 72.2
CiPaw.08G122000 Carya illinoinensis HOM05D005123 ORTHO05D006532 5.8e-53 211.1 139 70.5
Nitab4.5_0010168g0020 Nicotiana tabacum HOM05D005123 ORTHO05D006532 5.8e-53 211.1 139 69.1
CAN.G134.75 Capsicum annuum HOM05D005123 ORTHO05D006532 9.8e-53 210.3 139 68.3
PSO170G0405 Papaver somniferum HOM05D005123 ORTHO05D006532 9.8e-53 210.3 126 71.4
MD04G1226700 Malus domestica HOM05D005123 ORTHO05D006532 1.7e-52 209.5 141 66.0
TWI12G0989 Tripterygium wilfordii HOM05D005123 ORTHO05D006532 1.7e-52 209.5 139 66.2
PGSC0003DMG400027514 Solanum tuberosum HOM05D005123 ORTHO05D006532 2.2e-52 209.1 139 68.3
MELO3C004395.2 Cucumis melo HOM05D005123 ORTHO05D006532 2.9e-52 208.8 128 69.5
PSO063G6470 Papaver somniferum HOM05D005123 ORTHO05D006532 2.9e-52 208.8 126 70.6
CANSAT54G2420 Cannabis sativa HOM05D005123 ORTHO05D006532 4.9e-52 208.0 126 70.6
Sc06g0003780 Simmondsia chinensis HOM05D005123 ORTHO05D006532 4.9e-52 208.0 139 66.2
Aa31LG5G15060 Aethionema arabicum HOM05D005123 ORTHO05D006532 6.4e-52 207.6 139 68.3
Phvul.006G102800 Phaseolus vulgaris HOM05D005123 ORTHO05D006532 1.1e-51 206.8 139 66.9
CsaV3_2G003960 Cucumis sativus L. HOM05D005123 ORTHO05D006532 1.4e-51 206.5 139 66.9
Peaxi162Scf00282g00718 Petunia axillaris HOM05D005123 ORTHO05D006532 1.4e-51 206.5 139 67.6
DCAR_006646 Daucus carota HOM05D005123 ORTHO05D006532 3.2e-51 205.3 139 69.1
Thhalv10020605m.g Eutrema salsugineum HOM05D005123 ORTHO05D006532 3.2e-51 205.3 140 68.6
Gorai.004G247500 Gossypium raimondii HOM05D005123 ORTHO05D006532 3.2e-51 205.3 136 69.9
Lj1g0023983 Lotus japonicus HOM05D005123 ORTHO05D006532 4.1e-51 204.9 141 66.0
Sp3g03490 Schrenkiella parvula HOM05D005123 ORTHO05D006532 5.4e-51 204.5 140 68.6
BcaB04g19310 Brassica carinata HOM05D005123 ORTHO05D006532 7.0e-51 204.1 140 67.9
Glyma.19G245900 Glycine max HOM05D005123 ORTHO05D006532 9.2e-51 203.8 139 64.7
AT3G04650 Arabidopsis thaliana HOM05D005123 ORTHO05D006532 1.2e-50 203.4 140 67.9
arahy.Tifrunner.gnm1.ann1.01P7ER Arachis hypogaea HOM05D005123 ORTHO05D006532 1.2e-50 203.4 139 64.7
arahy.Tifrunner.gnm1.ann1.9VED02 Arachis hypogaea HOM05D005123 ORTHO05D006532 1.2e-50 203.4 139 64.7
AL3G14690 Arabidopsis lyrata HOM05D005123 ORTHO05D006532 2.0e-50 202.6 140 67.9
AUR62001056 Chenopodium quinoa HOM05D005123 ORTHO05D006532 2.0e-50 202.6 126 66.7
AUR62004896 Chenopodium quinoa HOM05D005123 ORTHO05D006532 2.0e-50 202.6 126 66.7
EL10Ac4g09082 Beta vulgaris HOM05D005123 ORTHO05D006532 2.7e-50 202.2 139 63.3
VMungo0540G0367 Vigna mungo HOM05D005123 ORTHO05D006532 2.7e-50 202.2 139 65.5
ClCG02G016790 Citrullus lanatus HOM05D005123 ORTHO05D006532 3.5e-50 201.8 139 66.2
Lalb_Chr18g0043951 Lupinus albus HOM05D005123 ORTHO05D006532 3.5e-50 201.8 126 66.7
TPR.G6919 Trifolium pratense HOM05D005123 ORTHO05D006532 3.5e-50 201.8 141 64.5
Medtr7g115310 Medicago truncatula HOM05D005123 ORTHO05D006532 6.0e-50 201.1 141 65.2
BcaC01g04358 Brassica carinata HOM05D005123 ORTHO05D006532 1.0e-49 200.3 140 65.7
A03p33760 Brassica napus HOM05D005123 ORTHO05D006532 1.3e-49 199.9 140 65.0
BraA03t12549Z Brassica rapa HOM05D005123 ORTHO05D006532 1.3e-49 199.9 140 65.0
Ca_09430_v3 Cicer arietinum L. HOM05D005123 ORTHO05D006532 1.7e-49 199.5 142 63.4
Cc02_g30910 Coffea canephora HOM05D005123 ORTHO05D006532 1.7e-49 199.5 125 69.6
unitig_0.g2303 Utricularia gibba HOM05D005123 ORTHO05D006532 1.7e-49 199.5 139 64.0
Ah.04g162190 Amaranthus hybridus HOM05D005123 ORTHO05D006532 3.0e-49 198.7 139 64.0
Carub.0003s0381 Capsella rubella HOM05D005123 ORTHO05D006532 3.0e-49 198.7 140 65.0
SalBow4G0099 Salvia bowleyana HOM05D005123 ORTHO05D006532 3.9e-49 198.4 139 64.7
C03p41060 Brassica napus HOM05D005123 ORTHO05D006532 5.0e-49 198.0 140 65.0
BolC3t16395H Brassica oleracea HOM05D005123 ORTHO05D006532 5.0e-49 198.0 140 65.0
CARHR078850 Cardamine hirsuta HOM05D005123 ORTHO05D006532 5.0e-49 198.0 140 65.0
PGR004G1863 Punica granatum HOM05D005123 ORTHO05D006532 5.0e-49 198.0 139 69.1
ATR0665G099 Amborella trichopoda HOM05D005123 ORTHO05D006532 6.6e-49 197.6 126 67.5
MSTRG.5089 Avicennia marina HOM05D005123 ORTHO05D006532 1.1e-48 196.8 139 66.2
Oeu038460.1 Olea europaea HOM05D005123 ORTHO05D006532 1.5e-48 196.4 139 64.7
Rhsim07G0074600 Rhododendron simsii HOM05D005123 ORTHO05D006532 1.5e-48 196.4 139 66.9
SalBow4G1942 Salvia bowleyana HOM05D005123 ORTHO05D006532 3.3e-48 195.3 139 64.0
Migut.N01919 Erythranthe guttata HOM05D005123 ORTHO05D006532 7.3e-48 194.1 139 66.9
Lsat_1_v5_gn_0_36021 Lactuca sativa HOM05D005123 ORTHO05D006532 6.2e-47 191.0 139 64.0
Atru.chr2.845 Acer truncatum HOM05D005123 ORTHO05D006532 1.1e-46 190.3 96 94.8
Hund06950 Selenicereus undatus HOM05D005123 ORTHO05D006532 1.1e-46 190.3 139 61.9
SGA_v2.0_scaffold80G25897 Striga asiatica HOM05D005123 ORTHO05D006532 2.3e-46 189.1 124 66.9
HanXRQChr09g0259781 Helianthus annuus HOM05D005123 ORTHO05D006532 4.0e-46 188.3 139 63.3
Psat0s169g0040 Pisum sativum HOM05D005123 ORTHO05D006532 4.0e-46 188.3 142 62.0
ECA232G3987 Erigeron canadensis HOM05D005123 ORTHO05D006532 4.4e-45 184.9 139 63.3
Zm00001eb030960 Zea mays HOM05D005123 ORTHO05D006532 2.9e-44 182.2 140 59.3
Lj9C664G10 Lonicera japonica HOM05D005123 ORTHO05D006532 1.4e-43 179.9 105 75.2
HPP92_026486 Vanilla planifolia HOM05D005123 ORTHO05D006532 3.5e-42 175.3 143 59.4
Os12g0597400 Oryza sativa ssp. japonica HOM05D005123 ORTHO05D006532 7.8e-42 174.1 130 60.0
HPP92_014225 Vanilla planifolia HOM05D005123 ORTHO05D006532 3.9e-41 171.8 143 58.7
Nitab4.5_0002247g0050 Nicotiana tabacum HOM05D005123 ORTHO05D006532 1.7e-36 156.4 93 74.2
Pp3c3_15330 Physcomitrium patens HOM05D005123 ORTHO05D006532 5.4e-35 151.4 129 49.6
Ciclev10030138m.g Citrus clementina HOM05D005123 ORTHO05D006532 3.0e-33 145.6 82 79.3
AagrBONN_evm.TU.Sc2ySwM_228.1429 Anthoceros agrestis HOM05D005123 ORTHO05D006532 1.9e-32 142.9 132 51.5
Mapoly0079s0067 Marchantia polymorpha HOM05D005123 ORTHO05D006532 5.6e-32 141.4 115 54.8
Gohir.A07G068900 Gossypium hirsutum HOM05D005123 ORTHO05D006532 7.3e-32 141.0 82 74.4
CBR_g26324 Chara braunii HOM05D005123 ORTHO05D006532 2.1e-31 139.4 131 48.9
SMO367G1262 Selaginella moellendorffii HOM05D005123 ORTHO05D006532 6.4e-28 127.9 142 45.8
MBI11_g34846_MAGBIO Magnolia biondii HOM05D005123 ORTHO05D006532 8.4e-28 127.5 82 67.1
Cre03.g207150 Chlamydomonas reinhardtii HOM05D005123 ORTHO05D006532 3.9e-25 118.6 124 47.6
C05p55240 Brassica napus HOM05D005123 ORTHO05D006532 1.6e-23 113.2 110 51.8
BolC3t16228H Brassica oleracea HOM05D005123 ORTHO05D002627 6.2e-23 111.3 109 50.5
SEGI_22607 Sequoiadendron giganteum HOM05D005123 ORTHO05D006532 6.4e-20 101.3 91 52.7
AUR62044106 Chenopodium quinoa HOM05D005123 ORTHO05D006532 1.7e-17 93.2 55 69.1
Nn1g02615 Nelumbo nucifera HOM05D005123 ORTHO05D006532 8.7e-17 90.9 60 70.0
MCO15G267 Micromonas commoda HOM05D005123 ORTHO05D006532 3.3e-16 89.0 125 37.6
Ciclev10029734m.g Citrus clementina HOM05D005123 ORTHO05D006532 4.8e-15 85.1 44 84.1
Gohir.D08G233000 Gossypium hirsutum HOM05D005123 ORTHO05D006532 1.4e-14 83.6 67 59.7
AagrBONN_evm.TU.Sc2ySwM_362.372 Anthoceros agrestis HOM05D006828 ORTHO05D008312 2.6e-13 79.3 130 35.4
Pp3c5_21370 Physcomitrium patens HOM05D006828 ORTHO05D008312 1.3e-12 77.0 128 32.0
SEGI_30682 Sequoiadendron giganteum HOM05D005123 ORTHO05D006532 2.4e-11 72.8 55 58.2
Mapoly0153s0014 Marchantia polymorpha HOM05D006828 ORTHO05D008312 5.4e-11 71.6 123 34.1
SEGI_19390 Sequoiadendron giganteum HOM05D006828 ORTHO05D008312 9.3e-11 70.9 125 33.6
SEGI_25857 Sequoiadendron giganteum HOM05D006828 ORTHO05D008312 9.3e-11 70.9 125 33.6
PSO675G1546 Papaver somniferum HOM05D006828 ORTHO05D008312 1.8e-09 66.6 157 29.9
PSO675G1962 Papaver somniferum HOM05D006828 ORTHO05D008312 1.8e-09 66.6 156 30.1
Os03g0784000 Oryza sativa ssp. japonica HOM05D006828 ORTHO05D008312 2.3e-09 66.2 122 32.8
Zm00001eb059780 Zea mays HOM05D006828 ORTHO05D008312 5.6e-08 61.6 122 30.3
Nn7g37698 Nelumbo nucifera HOM05D006828 ORTHO05D008312 7.4e-08 61.2 122 32.0
ATR1098G081 Amborella trichopoda HOM05D004490 ORTHO05D008312 2.8e-07 59.3 124 31.5
Ciclev10030009m.g Citrus clementina HOM05D005123 ORTHO05D006532 3.7e-07 58.9 37 73.0
Phvul.005G055100 Phaseolus vulgaris HOM05D006828 ORTHO05D008312 3.7e-07 58.9 129 31.0
Potri.001G438500 Populus trichocarpa HOM05D006828 ORTHO05D008312 3.7e-07 58.9 124 29.8
BraA05t20621Z Brassica rapa HOM05D006828 ORTHO05D008312 4.8e-07 58.5 126 27.8
CiPaw.11G067200 Carya illinoinensis HOM05D006828 ORTHO05D008312 4.8e-07 58.5 122 33.6
AT1G55980 Arabidopsis thaliana HOM05D006828 ORTHO05D008312 6.2e-07 58.2 122 29.5
AT1G56000 Arabidopsis thaliana HOM05D006828 ORTHO05D008312 6.2e-07 58.2 122 29.5
Lalb_Chr25g0285201 Lupinus albus HOM05D006828 ORTHO05D008312 8.1e-07 57.8 122 33.6
Manes.03G083000 Manihot esculenta HOM05D006828 ORTHO05D008312 8.1e-07 57.8 129 28.7
Oeu002810.1 Olea europaea HOM05D006828 ORTHO05D008312 8.1e-07 57.8 131 26.7
CARHR045730 Cardamine hirsuta HOM05D006828 ORTHO05D008312 1.1e-06 57.4 123 30.1
Cc05_g15920 Coffea canephora HOM05D006828 ORTHO05D008312 1.1e-06 57.4 130 26.2
AL1G64100 Arabidopsis lyrata HOM05D006828 ORTHO05D008312 1.4e-06 57.0 122 28.7
Carub.0001s4459 Capsella rubella HOM05D006828 ORTHO05D008312 1.4e-06 57.0 122 28.7
TPR.G10335 Trifolium pratense HOM05D006828 ORTHO05D008312 1.8e-06 56.6 119 31.1
Ciclev10020659m.g Citrus clementina HOM05D006828 ORTHO05D008312 2.4e-06 56.2 120 30.8
Glyma.08G173600 Glycine max HOM05D006828 ORTHO05D008312 2.4e-06 56.2 122 32.8
Lsat_1_v5_gn_9_88160 Lactuca sativa HOM05D006828 ORTHO05D008312 2.4e-06 56.2 129 25.6
Sed0017518 Sechium edule HOM05D006828 ORTHO05D008312 2.4e-06 56.2 122 32.0
MSTRG.14534 Avicennia marina HOM05D006828 ORTHO05D008312 4.0e-06 55.5 124 29.0
Aa31LG10G200 Aethionema arabicum HOM05D006828 ORTHO05D008312 5.3e-06 55.1 95 37.9
Thhalv10011583m.g Eutrema salsugineum HOM05D006828 ORTHO05D008312 5.3e-06 55.1 122 29.5
VMungo1080G0718 Vigna mungo HOM05D006828 ORTHO05D008312 6.9e-06 54.7 118 32.2


User provided reference genes

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