Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr2.786 Acer truncatum HOM05D000585 ORTHO05D003019 2.5e-47 191.8 99 100.0
Ciclev10003890m.g Citrus clementina HOM05D000585 ORTHO05D003019 1.4e-13 79.7 102 50.0
PGR004G0878 Punica granatum HOM05D000585 ORTHO05D003019 6.8e-13 77.4 103 47.6
QL03p024963 Quercus lobata HOM05D000585 ORTHO05D003019 1.3e-11 73.2 90 48.9
Eucgr.H04381 Eucalyptus grandis HOM05D000585 ORTHO05D003019 1.7e-11 72.8 102 46.1
Duzib177G0969 Durio zibethinus HOM05D000585 ORTHO05D003019 3.7e-11 71.6 101 49.5
Thecc.05G287200 Theobroma cacao HOM05D000585 ORTHO05D003019 6.4e-11 70.9 90 50.0
GSVIVG01021830001 Vitis vinifera HOM05D000585 ORTHO05D003019 8.3e-11 70.5 101 46.5
MD04G1222100 Malus domestica HOM05D000585 ORTHO05D003019 1.9e-10 69.3 102 46.1
Cc00_g32250 Coffea canephora HOM05D000585 ORTHO05D003019 2.4e-10 68.9 93 45.2
Manes.08G132400 Manihot esculenta HOM05D000585 ORTHO05D003019 2.4e-10 68.9 101 44.6
Potri.013G038901 Populus trichocarpa HOM05D000585 ORTHO05D003019 2.4e-10 68.9 101 44.6
CSS0041457 Camellia sinensis var. sinensis HOM05D000585 ORTHO05D003019 3.2e-10 68.6 116 44.0
Cc00_g25100 Coffea canephora HOM05D000585 ORTHO05D003019 9.2e-10 67.0 93 44.1
Prupe.6G341200 Prunus persica HOM05D000585 ORTHO05D003019 1.2e-09 66.6 105 46.7
Haze_04343 Corylus avellana HOM05D000585 ORTHO05D003019 1.6e-09 66.2 102 46.1
Potri.005G051500 Populus trichocarpa HOM05D000585 ORTHO05D003019 1.6e-09 66.2 101 43.6
Hma1.2p1_0902F.1_g234750 Hydrangea macrophylla HOM05D000585 ORTHO05D003019 2.7e-09 65.5 99 41.4
COL.COLO4_15300 Corchorus olitorius HOM05D000585 ORTHO05D003019 7.8e-09 63.9 89 47.2
Potri.010G082600 Populus trichocarpa HOM05D000585 ORTHO05D003019 7.8e-09 63.9 102 42.2
Psat6g205440 Pisum sativum HOM05D000585 ORTHO05D003019 1.7e-08 62.8 103 43.7
CsaV3_2G004260 Cucumis sativus L. HOM05D000585 ORTHO05D003019 3.0e-08 62.0 90 42.2
TAR636G3099 Trochodendron aralioides HOM05D000585 ORTHO05D003019 3.0e-08 62.0 103 44.7
Cc02_g31870 Coffea canephora HOM05D000585 ORTHO05D003019 3.9e-08 61.6 93 45.2
Cc03_g04190 Coffea canephora HOM05D000585 ORTHO05D003019 3.9e-08 61.6 102 44.1
Duzib212G0580 Durio zibethinus HOM05D000585 ORTHO05D003019 3.9e-08 61.6 104 43.3
Lj5g0007146 Lotus japonicus HOM05D000585 ORTHO05D003019 6.6e-08 60.8 102 43.1
CiPaw.02G121900 Carya illinoinensis HOM05D000585 ORTHO05D003019 8.6e-08 60.5 103 44.7
Sabra10G0060500 Salix brachista HOM05D000585 ORTHO05D003019 1.1e-07 60.1 103 39.8
TWI09G0946 Tripterygium wilfordii HOM05D000585 ORTHO05D003019 1.1e-07 60.1 101 41.6
Cfa008456 Carpinus fangiana HOM05D000585 ORTHO05D003019 1.5e-07 59.7 103 42.7
Medtr1g103070 Medicago truncatula HOM05D000585 ORTHO05D003019 1.5e-07 59.7 101 41.6
Actinidia05770 Actinidia chinensis HOM05D000585 ORTHO05D003019 1.9e-07 59.3 88 45.5
TPR.G26099 Trifolium pratense HOM05D000585 ORTHO05D003019 1.9e-07 59.3 103 40.8
MELO3C004368.2 Cucumis melo HOM05D000585 ORTHO05D003019 2.5e-07 58.9 87 44.8
Glyma.10G245000 Glycine max HOM05D000585 ORTHO05D003019 2.5e-07 58.9 101 43.6
Actinidia18531 Actinidia chinensis HOM05D000585 ORTHO05D003019 3.3e-07 58.5 103 43.7
TWI12G1426 Tripterygium wilfordii HOM05D000585 ORTHO05D003019 3.3e-07 58.5 96 41.7
CSS0013848 Camellia sinensis var. sinensis HOM05D000585 ORTHO05D003019 4.3e-07 58.2 103 39.8
FAN09G4130 Fragaria x ananassa HOM05D000585 ORTHO05D003019 4.3e-07 58.2 91 47.3
GSVIVG01018029001 Vitis vinifera HOM05D000585 ORTHO05D003019 4.3e-07 58.2 102 40.2
Actinidia08468 Actinidia chinensis HOM05D000585 ORTHO05D003019 5.6e-07 57.8 103 43.7
Dinv14037 Davidia involucrata HOM05D000585 ORTHO05D003019 5.6e-07 57.8 91 46.2
TWI56G0144 Tripterygium wilfordii HOM05D000585 ORTHO05D003019 5.6e-07 57.8 96 40.6
MBI11_g04238_MAGBIO Magnolia biondii HOM05D000585 ORTHO05D003019 7.3e-07 57.4 102 44.1
Nn6g34148 Nelumbo nucifera HOM05D000585 ORTHO05D003019 7.3e-07 57.4 101 41.6
Phvul.007G060900 Phaseolus vulgaris HOM05D000585 ORTHO05D003019 7.3e-07 57.4 92 45.7
Prupe.1G020000 Prunus persica HOM05D000585 ORTHO05D003019 7.3e-07 57.4 94 39.4
Lj3A729T49 Lonicera japonica HOM05D000585 ORTHO05D003019 9.5e-07 57.0 104 40.4
Peaxi162Scf00316g01115 Petunia axillaris HOM05D000585 ORTHO05D003019 9.5e-07 57.0 94 45.7
TAR365G0441 Trochodendron aralioides HOM05D000585 ORTHO05D003019 9.5e-07 57.0 102 44.1
arahy.Tifrunner.gnm1.ann1.52TGP1 Arachis hypogaea HOM05D000585 ORTHO05D003019 1.2e-06 56.6 103 41.7
arahy.Tifrunner.gnm1.ann1.D45XKE Arachis hypogaea HOM05D000585 ORTHO05D003019 1.2e-06 56.6 103 41.7
FAN02G1864 Fragaria x ananassa HOM05D000585 ORTHO05D003019 1.2e-06 56.6 91 46.2
Psat6g104080 Pisum sativum HOM05D000585 ORTHO05D003019 1.2e-06 56.6 92 42.4
Sabra08G0119300 Salix brachista HOM05D000585 ORTHO05D003019 1.2e-06 56.6 101 37.6
CANSAT54G1360 Cannabis sativa HOM05D000585 ORTHO05D003019 1.6e-06 56.2 105 40.0
DCAR_030682 Daucus carota HOM05D000585 ORTHO05D003019 1.6e-06 56.2 103 39.8
Duzib052G0772 Durio zibethinus HOM05D000585 ORTHO05D003019 1.6e-06 56.2 102 42.2
TAR362G0507 Trochodendron aralioides HOM05D000585 ORTHO05D003019 1.6e-06 56.2 103 41.7
Ca_10859_v3 Cicer arietinum L. HOM05D000585 ORTHO05D003019 2.1e-06 55.8 101 38.6
Glyma.20G149600 Glycine max HOM05D000585 ORTHO05D003019 2.1e-06 55.8 100 42.0
Lalb_Chr03g0037411 Lupinus albus HOM05D000585 ORTHO05D003019 2.1e-06 55.8 92 45.7
ECA240G2949 Erigeron canadensis HOM05D000585 ORTHO05D003019 2.8e-06 55.5 107 37.4
MD13G1198300 Malus domestica HOM05D000585 ORTHO05D003019 2.8e-06 55.5 103 37.9
PSO170G4407 Papaver somniferum HOM05D000585 ORTHO05D003019 2.8e-06 55.5 106 39.6
RcHm_v2.0_Chr3g0451751 Rosa chinensis HOM05D000585 ORTHO05D003019 2.8e-06 55.5 91 47.3
Thecc.04G237400 Theobroma cacao HOM05D000585 ORTHO05D003019 2.8e-06 55.5 101 40.6
CAN.G1402.14 Capsicum annuum HOM05D000585 ORTHO05D003019 3.6e-06 55.1 93 43.0
arahy.Tifrunner.gnm1.ann1.F73KQI Arachis hypogaea HOM05D000585 ORTHO05D003019 4.7e-06 54.7 96 41.7
arahy.Tifrunner.gnm1.ann1.MLEZ7Y Arachis hypogaea HOM05D000585 ORTHO05D003019 4.7e-06 54.7 88 42.0
DCAR_025317 Daucus carota HOM05D000585 ORTHO05D003019 4.7e-06 54.7 92 41.3
PSO210G2806 Papaver somniferum HOM05D000585 ORTHO05D003019 4.7e-06 54.7 106 39.6
Solyc01g097490.1 Solanum lycopersicum HOM05D000585 ORTHO05D003019 4.7e-06 54.7 89 36.0
PGSC0003DMG400019447 Solanum tuberosum HOM05D000585 ORTHO05D003019 4.7e-06 54.7 89 36.0
FAN22G2234 Fragaria x ananassa HOM05D000585 ORTHO05D003019 6.2e-06 54.3 105 38.1
Lalb_Chr02g0140691 Lupinus albus HOM05D000585 ORTHO05D003019 6.2e-06 54.3 101 37.6
Aqoxy2G03447 Aquilegia oxysepala HOM05D000585 ORTHO05D003019 8.1e-06 53.9 101 40.6
MSTRG.4056 Avicennia marina HOM05D000585 ORTHO05D003019 8.1e-06 53.9 103 40.8
CANSAT78G1820 Cannabis sativa HOM05D000585 ORTHO05D003019 8.1e-06 53.9 103 41.7


User provided reference genes

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