Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr2.783 Acer truncatum HOM05D004556 ORTHO05D005298 4.6e-169 597.8 302 100.0
Thecc.05G287400 Theobroma cacao HOM05D004556 ORTHO05D005298 4.2e-146 521.5 300 86.0
Prupe.6G340800 Prunus persica HOM05D004556 ORTHO05D005298 6.7e-144 514.2 301 84.1
Duzib128G0953 Durio zibethinus HOM05D004556 ORTHO05D005298 1.1e-143 513.5 300 84.0
MD12G1237600 Malus domestica HOM05D004556 ORTHO05D005298 1.9e-143 512.7 301 84.4
Gohir.D08G231400 Gossypium hirsutum HOM05D004556 ORTHO05D005298 2.5e-143 512.3 300 83.3
COL.COLO4_15298 Corchorus olitorius HOM05D004556 ORTHO05D005298 7.4e-143 510.8 300 83.7
Gorai.004G245800 Gossypium raimondii HOM05D004556 ORTHO05D005298 7.4e-143 510.8 300 83.0
GSVIVG01021835001 Vitis vinifera HOM05D004556 ORTHO05D005298 9.6e-143 510.4 300 83.0
Duzib106G0883 Durio zibethinus HOM05D004556 ORTHO05D005298 1.3e-142 510.0 300 82.7
Gohir.A08G214400 Gossypium hirsutum HOM05D004556 ORTHO05D005298 1.6e-142 509.6 300 83.0
Ciclev10001991m.g Citrus clementina HOM05D004556 ORTHO05D005298 1.1e-141 506.9 302 83.1
MD04G1221600 Malus domestica HOM05D004556 ORTHO05D005298 1.1e-141 506.9 301 84.1
CSS0028825 Camellia sinensis var. sinensis HOM05D004556 ORTHO05D005298 1.4e-141 506.5 301 81.7
Potri.005G051300 Populus trichocarpa HOM05D004556 ORTHO05D005298 1.8e-141 506.1 301 81.1
Gorai.007G284100 Gossypium raimondii HOM05D004556 ORTHO05D005298 2.4e-141 505.8 300 82.7
CiPaw.07G064700 Carya illinoinensis HOM05D004556 ORTHO05D005298 4.0e-141 505.0 301 82.1
RcHm_v2.0_Chr3g0451841 Rosa chinensis HOM05D004556 ORTHO05D005298 4.0e-141 505.0 301 82.4
Dinv11531 Davidia involucrata HOM05D004556 ORTHO05D005298 6.9e-141 504.2 300 82.0
Gohir.D11G264100 Gossypium hirsutum HOM05D004556 ORTHO05D005298 9.0e-141 503.8 300 82.3
Dinv17770 Davidia involucrata HOM05D004556 ORTHO05D005298 3.4e-140 501.9 301 81.1
Duzib177G0375 Durio zibethinus HOM05D004556 ORTHO05D005298 3.4e-140 501.9 316 79.1
VMungo0540G1874 Vigna mungo HOM05D004556 ORTHO05D005298 3.4e-140 501.9 301 81.7
Potri.013G038700 Populus trichocarpa HOM05D004556 ORTHO05D005298 5.8e-140 501.1 301 80.4
QL03p024856 Quercus lobata HOM05D004556 ORTHO05D005298 1.0e-139 500.4 301 80.7
Cpa.g.sc117.71 Carica papaya HOM05D004556 ORTHO05D005298 1.3e-139 500.0 301 81.1
FAN02G1055 Fragaria x ananassa HOM05D004556 ORTHO05D005298 1.3e-139 500.0 301 81.7
Glyma.03G245800 Glycine max HOM05D004556 ORTHO05D005298 1.3e-139 500.0 301 81.4
Phvul.006G100100 Phaseolus vulgaris HOM05D004556 ORTHO05D005298 1.3e-139 500.0 301 82.1
TPR.G6984 Trifolium pratense HOM05D004556 ORTHO05D005298 2.9e-139 498.8 301 82.1
CANSAT54G0892 Cannabis sativa HOM05D004556 ORTHO05D005298 4.9e-139 498.0 301 81.4
Sabra13G0036200 Salix brachista HOM05D004556 ORTHO05D005298 4.9e-139 498.0 301 80.7
TAR362G0361 Trochodendron aralioides HOM05D004556 ORTHO05D005298 8.4e-139 497.3 300 80.7
Ca_09410_v3 Cicer arietinum L. HOM05D004556 ORTHO05D005298 1.1e-138 496.9 301 81.1
ClCG02G016480 Citrullus lanatus HOM05D004556 ORTHO05D005298 1.4e-138 496.5 301 80.1
Glyma.19G243300 Glycine max HOM05D004556 ORTHO05D005298 1.4e-138 496.5 301 81.4
MELO3C004366.2 Cucumis melo HOM05D004556 ORTHO05D005298 1.9e-138 496.1 302 80.5
CsaV3_2G004290 Cucumis sativus L. HOM05D004556 ORTHO05D005298 1.9e-138 496.1 302 80.5
arahy.Tifrunner.gnm1.ann1.SCJ0TV Arachis hypogaea HOM05D004556 ORTHO05D005298 2.5e-138 495.7 301 80.1
FvH4_6g03340 Fragaria vesca HOM05D004556 ORTHO05D005298 2.5e-138 495.7 301 81.4
TWI56G0949 Tripterygium wilfordii HOM05D004556 ORTHO05D005298 2.5e-138 495.7 302 81.1
Medtr7g114810 Medicago truncatula HOM05D004556 ORTHO05D005298 7.1e-138 494.2 301 80.7
Lj1g0006589 Lotus japonicus HOM05D004556 ORTHO05D005298 9.3e-138 493.8 301 81.1
Lalb_Chr15g0076861 Lupinus albus HOM05D004556 ORTHO05D005298 9.3e-138 493.8 301 80.4
arahy.Tifrunner.gnm1.ann1.ZA55QJ Arachis hypogaea HOM05D004556 ORTHO05D005298 1.2e-137 493.4 301 79.7
FAN14G0561 Fragaria x ananassa HOM05D004556 ORTHO05D005298 1.2e-137 493.4 299 81.6
Lalb_Chr18g0045051 Lupinus albus HOM05D004556 ORTHO05D005298 1.2e-137 493.4 301 80.7
Manes.09G154700 Manihot esculenta HOM05D004556 ORTHO05D005298 1.2e-137 493.4 301 80.1
Hund22124 Selenicereus undatus HOM05D004556 ORTHO05D005298 4.6e-137 491.5 300 80.0
FAN05G0551 Fragaria x ananassa HOM05D004556 ORTHO05D005298 6.0e-137 491.1 299 80.9
CSS0008105 Camellia sinensis var. sinensis HOM05D004556 ORTHO05D005298 7.9e-137 490.7 301 80.1
Hma1.2p1_0083F.1_g042880 Hydrangea macrophylla HOM05D004556 ORTHO05D005298 1.0e-136 490.3 301 79.4
Eucgr.B01695 Eucalyptus grandis HOM05D004556 ORTHO05D005298 1.3e-136 490.0 301 78.7
PGSC0003DMG400022512 Solanum tuberosum HOM05D004556 ORTHO05D005298 2.3e-136 489.2 300 78.3
Actinidia05768 Actinidia chinensis HOM05D004556 ORTHO05D005298 3.9e-136 488.4 302 79.5
DCAR_029537 Daucus carota HOM05D004556 ORTHO05D005298 3.9e-136 488.4 300 79.3
Sed0015548 Sechium edule HOM05D004556 ORTHO05D005298 6.7e-136 487.6 301 78.4
FAN05G3160 Fragaria x ananassa HOM05D004556 ORTHO05D005298 8.7e-136 487.3 297 80.8
Nitab4.5_0005441g0010 Nicotiana tabacum HOM05D004556 ORTHO05D005298 8.7e-136 487.3 300 78.7
TAR365G0624 Trochodendron aralioides HOM05D004556 ORTHO05D005298 1.5e-135 486.5 300 79.0
CAN.G134.134 Capsicum annuum HOM05D004556 ORTHO05D005298 4.3e-135 485.0 300 77.7
Sopen01g041350 Solanum pennellii HOM05D004556 ORTHO05D005298 7.4e-135 484.2 300 77.3
Peaxi162Scf01049g00037 Petunia axillaris HOM05D004556 ORTHO05D005298 9.6e-135 483.8 300 77.7
Aqoxy5G00420 Aquilegia oxysepala HOM05D004556 ORTHO05D005298 1.6e-134 483.0 302 76.5
EL10Ac8g19247 Beta vulgaris HOM05D004556 ORTHO05D005298 1.6e-134 483.0 301 77.1
Sed0026396 Sechium edule HOM05D004556 ORTHO05D005298 1.6e-134 483.0 301 78.1
Cc02_g31820 Coffea canephora HOM05D004556 ORTHO05D005298 2.1e-134 482.6 302 78.1
Sc09g0003820 Simmondsia chinensis HOM05D004556 ORTHO05D005298 2.8e-134 482.3 301 78.7
PGR083G2383 Punica granatum HOM05D004556 ORTHO05D005298 3.7e-134 481.9 301 77.7
Rhsim05G0160800 Rhododendron simsii HOM05D004556 ORTHO05D005298 3.7e-134 481.9 301 78.1
Cfa006453 Carpinus fangiana HOM05D004556 ORTHO05D005298 1.4e-133 479.9 301 78.7
HanXRQChr08g0230031 Helianthus annuus HOM05D004556 ORTHO05D005298 3.1e-133 478.8 302 77.5
THA.LOC104818641 Tarenaya hassleriana HOM05D004556 ORTHO05D005298 5.3e-133 478.0 302 76.8
ECA232G2012 Erigeron canadensis HOM05D004556 ORTHO05D005298 2.6e-132 475.7 299 77.9
AL3G14990 Arabidopsis lyrata HOM05D004556 ORTHO05D005298 3.4e-132 475.3 304 77.3
Thhalv10021217m.g Eutrema salsugineum HOM05D004556 ORTHO05D005298 4.5e-132 474.9 304 77.3
MSTRG.5093 Avicennia marina HOM05D004556 ORTHO05D005298 5.8e-132 474.6 299 76.3
AT3G04830 Arabidopsis thaliana HOM05D004556 ORTHO05D005298 1.0e-131 473.8 304 77.0
AUR62034008 Chenopodium quinoa HOM05D004556 ORTHO05D005298 1.0e-131 473.8 299 75.6
BcaB04g19297 Brassica carinata HOM05D004556 ORTHO05D005298 1.3e-131 473.4 304 77.3
AUR62027473 Chenopodium quinoa HOM05D004556 ORTHO05D005298 2.2e-131 472.6 300 75.0
BolC5t34901H Brassica oleracea HOM05D004556 ORTHO05D005298 2.9e-131 472.2 304 76.6
Carub.0003s0402 Capsella rubella HOM05D004556 ORTHO05D005298 2.9e-131 472.2 303 77.2
BcaC01g04346 Brassica carinata HOM05D004556 ORTHO05D005298 3.8e-131 471.9 302 76.8
A03p33860 Brassica napus HOM05D004556 ORTHO05D005298 3.8e-131 471.9 302 77.2
BraA03t12560Z Brassica rapa HOM05D004556 ORTHO05D005298 3.8e-131 471.9 302 77.2
PSO210G7536 Papaver somniferum HOM05D004556 ORTHO05D005298 6.5e-131 471.1 300 77.0
Lsat_1_v5_gn_1_96700 Lactuca sativa HOM05D004556 ORTHO05D005298 8.4e-131 470.7 300 76.0
SGA_v2.0_scaffold196G40974 Striga asiatica HOM05D004556 ORTHO05D005298 1.1e-130 470.3 301 75.4
Sp3g03660 Schrenkiella parvula HOM05D004556 ORTHO05D005298 1.4e-130 469.9 304 76.3
C03p41170 Brassica napus HOM05D004556 ORTHO05D005298 9.3e-130 467.2 303 76.6
C05p62480 Brassica napus HOM05D004556 ORTHO05D005298 9.3e-130 467.2 304 76.0
Thhalv10004492m.g Eutrema salsugineum HOM05D004556 ORTHO05D005298 9.3e-130 467.2 303 75.6
SGA_v2.0_scaffold43G16266 Striga asiatica HOM05D004556 ORTHO05D005298 9.3e-130 467.2 300 75.7
BolC3t16405H Brassica oleracea HOM05D004556 ORTHO05D005298 1.6e-129 466.5 302 76.2
PSO832G3279 Papaver somniferum HOM05D004556 ORTHO05D005298 2.1e-129 466.1 300 76.0
vmacro21412 Vaccinium macrocarpon HOM05D004556 ORTHO05D005298 2.7e-129 465.7 322 72.0
AL6G40460 Arabidopsis lyrata HOM05D004556 ORTHO05D005298 4.6e-129 464.9 303 74.9
SalBow4G3027 Salvia bowleyana HOM05D004556 ORTHO05D005298 4.6e-129 464.9 301 75.4
unitig_0.g2302 Utricularia gibba HOM05D004556 ORTHO05D005298 4.6e-129 464.9 301 74.1
Ah.14g085270 Amaranthus hybridus HOM05D004556 ORTHO05D005298 7.9e-129 464.2 291 77.0
AT5G28220 Arabidopsis thaliana HOM05D004556 ORTHO05D005298 1.3e-128 463.4 302 75.5
ATR0665G084 Amborella trichopoda HOM05D004556 ORTHO05D005298 1.8e-128 463.0 300 73.0
BraA05t22977Z Brassica rapa HOM05D004556 ORTHO05D005298 1.9e-127 459.5 304 75.0
Sabra05G0045300 Salix brachista HOM05D004556 ORTHO05D005298 1.9e-127 459.5 339 69.6
A05p42760 Brassica napus HOM05D004556 ORTHO05D005298 6.3e-126 454.5 304 74.0
Carub.0006s2567 Capsella rubella HOM05D004556 ORTHO05D005298 6.3e-126 454.5 303 72.9
Aa31LG5G15220 Aethionema arabicum HOM05D004556 ORTHO05D005298 1.5e-124 449.9 316 71.2
MBI11_g10323_MAGBIO Magnolia biondii HOM05D004556 ORTHO05D005298 3.4e-124 448.7 306 71.9
CDE10G0245 Ceratophyllum demersum HOM05D004556 ORTHO05D005298 4.5e-124 448.4 299 72.2
HPP92_025859 Vanilla planifolia HOM05D004556 ORTHO05D005298 1.3e-123 446.8 300 73.3
Nitab4.5_0005729g0050 Nicotiana tabacum HOM05D004556 ORTHO05D005298 3.8e-123 445.3 301 73.4
SalBow4G2463 Salvia bowleyana HOM05D004556 ORTHO05D005298 3.2e-122 442.2 336 67.6
Manes.08G132100 Manihot esculenta HOM05D004556 ORTHO05D005298 6.7e-120 434.5 249 83.5
Os02g0127000 Oryza sativa ssp. japonica HOM05D004556 ORTHO05D005298 8.8e-120 434.1 301 71.1
SEGI_22763 Sequoiadendron giganteum HOM05D004556 ORTHO05D005298 3.1e-117 425.6 299 67.6
Dinv00306 Davidia involucrata HOM05D004556 ORTHO05D005298 6.9e-117 424.5 241 85.1
Zm00001eb210860 Zea mays HOM05D004556 ORTHO05D005298 1.2e-116 423.7 294 70.1
Solyc01g097740.3 Solanum lycopersicum HOM05D004556 ORTHO05D005298 4.5e-116 421.8 259 78.8
SHI18353 Sapria himalayana HOM05D004556 ORTHO05D005298 4.7e-113 411.8 340 62.9
Zm00001eb064390 Zea mays HOM05D004556 ORTHO05D005298 4.7e-113 411.8 289 68.9
HanXRQChr11g0340961 Helianthus annuus HOM05D004556 ORTHO05D005298 1.8e-112 409.8 302 67.9
Oeu045907.1 Olea europaea HOM05D004556 ORTHO05D005298 3.0e-112 409.1 310 68.1
TWI12G0865 Tripterygium wilfordii HOM05D004556 ORTHO05D005298 3.9e-112 408.7 302 69.9
Nn1g02409 Nelumbo nucifera HOM05D004556 ORTHO05D005298 5.0e-107 391.7 300 66.0
Gohir.A11G254300 Gossypium hirsutum HOM05D004556 ORTHO05D005298 3.5e-100 369.0 300 65.3
Mapoly0010s0190 Marchantia polymorpha HOM05D004556 ORTHO05D005298 1.2e-97 360.5 298 60.4
Pp3c22_11510 Physcomitrium patens HOM05D004556 ORTHO05D005298 1.6e-97 360.1 299 59.2
SMO351G0459 Selaginella moellendorffii HOM05D004556 ORTHO05D005298 3.6e-97 359.0 291 58.8
vmacro21326 Vaccinium macrocarpon HOM05D004556 ORTHO05D005298 3.0e-96 355.9 510 42.2
Psat3g008080 Pisum sativum HOM05D004556 ORTHO05D005298 4.0e-96 355.5 209 82.3
THA.LOC104821680 Tarenaya hassleriana HOM05D004556 ORTHO05D005298 1.3e-94 350.5 209 79.4
CARHR079090 Cardamine hirsuta HOM05D004556 ORTHO05D005298 2.2e-91 339.7 221 77.8
Haze_04338 Corylus avellana HOM05D004556 ORTHO05D005298 1.0e-88 330.9 201 81.1
Lj9C665G12 Lonicera japonica HOM05D004556 ORTHO05D005298 1.8e-80 303.5 243 67.1
CBR_g2743 Chara braunii HOM05D004556 ORTHO05D005298 1.0e-75 287.7 298 49.0
Rhsim05G0161200 Rhododendron simsii HOM05D004556 ORTHO05D005298 5.0e-75 285.4 243 62.1
AagrBONN_evm.TU.Sc2ySwM_228.926 Anthoceros agrestis HOM05D004556 ORTHO05D005298 4.7e-73 278.9 246 54.9
Actinidia30934 Actinidia chinensis HOM05D004556 ORTHO05D005298 1.8e-64 250.4 154 79.9
PRCOL_00003723 Prasinoderma coloniale HOM05D004556 ORTHO05D005298 2.2e-54 216.9 281 41.6
Cre13.g579950 Chlamydomonas reinhardtii HOM05D004556 ORTHO05D005298 4.0e-48 196.1 274 38.3
AagrBONN_evm.TU.Sc2ySwM_228.922 Anthoceros agrestis HOM05D004556 ORTHO05D005298 8.4e-46 188.3 148 60.1
TAR636G2079 Trochodendron aralioides HOM05D001851 ORTHO05D002237 2.3e-43 180.3 120 73.3
Migut.O00800 Erythranthe guttata HOM05D004556 ORTHO05D005298 1.4e-40 171.0 100 81.0
Lj9C668G11 Lonicera japonica HOM05D004556 ORTHO05D005298 1.3e-35 154.5 196 48.0
Potri.013G038501 Populus trichocarpa HOM05D004556 ORTHO05D005298 4.3e-34 149.4 84 82.1
CARHR079080 Cardamine hirsuta HOM05D004556 ORTHO05D005298 9.9e-31 138.3 84 77.4
MCO08G289 Micromonas commoda HOM05D004556 ORTHO05D005298 4.0e-24 116.3 247 27.9
BolC3t16406H Brassica oleracea HOM05D004556 ORTHO05D005298 1.3e-22 111.3 84 67.9
Lj9C665T13 Lonicera japonica HOM05D004556 ORTHO05D005298 3.5e-20 103.2 70 68.6
RcHm_v2.0_Chr6g0244381 Rosa chinensis HOM05D004556 ORTHO05D005298 3.5e-20 103.2 87 64.4
CBR_g57838 Chara braunii HOM05D006582 ORTHO05D008313 1.3e-19 101.3 150 38.7
HanXRQChr13g0394071 Helianthus annuus HOM05D004556 ORTHO05D005298 3.9e-19 99.8 63 71.4
AagrBONN_evm.TU.Sc2ySwM_228.821 Anthoceros agrestis HOM05D004556 ORTHO05D005298 1.5e-18 97.8 148 40.5
TPR.G31876 Trifolium pratense HOM05D004556 ORTHO05D005298 6.3e-17 92.4 86 58.1
RcHm_v2.0_Chr5g0051541 Rosa chinensis HOM05D004556 ORTHO05D005298 1.8e-16 90.9 121 43.8
BcaB04g19294 Brassica carinata HOM05D004556 ORTHO05D005298 8.2e-09 65.5 54 63.0
Lj9A668T37 Lonicera japonica HOM05D004556 ORTHO05D005298 1.8e-08 64.3 46 65.2
RcHm_v2.0_Chr7g0229041 Rosa chinensis HOM05D004556 ORTHO05D005298 2.6e-07 60.5 40 65.0
Sp1g08890 Schrenkiella parvula HOM05D000111 ORTHO05D013786 2.6e-07 60.5 63 54.0


User provided reference genes

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