Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr2.7 Acer truncatum HOM05D004072 ORTHO05D005933 3.4e-141 505.0 254 100.0
Atru.chr10.895 Acer truncatum HOM05D004072 ORTHO05D005933 7.5e-40 168.3 206 52.4
Ciclev10014084m.g Citrus clementina HOM05D004072 ORTHO05D005933 3.5e-37 159.5 206 48.5
Manes.14G122228 Manihot esculenta HOM05D004072 ORTHO05D005933 3.5e-37 159.5 206 48.5
Duzib132G0425 Durio zibethinus HOM05D004072 ORTHO05D005933 7.8e-37 158.3 206 46.6
Thecc.02G012200 Theobroma cacao HOM05D004072 ORTHO05D005933 7.8e-37 158.3 206 47.1
TWI73G0101 Tripterygium wilfordii HOM05D004072 ORTHO05D005933 7.8e-37 158.3 206 45.6
Gohir.D01G131100 Gossypium hirsutum HOM05D004072 ORTHO05D005933 3.0e-36 156.4 206 47.1
GSVIVG01021613001 Vitis vinifera HOM05D004072 ORTHO05D005933 3.0e-36 156.4 206 46.6
Hma1.2p1_1600F.1_g293150 Hydrangea macrophylla HOM05D004072 ORTHO05D005933 3.9e-36 156.0 226 44.7
Duzib052G1035 Durio zibethinus HOM05D004072 ORTHO05D005933 6.6e-36 155.2 206 45.6
Gorai.002G162800 Gossypium raimondii HOM05D004072 ORTHO05D005933 8.6e-36 154.8 206 46.6
SGA_v2.0_scaffold223G42858 Striga asiatica HOM05D004072 ORTHO05D005933 8.6e-36 154.8 205 47.8
Manes.06G055700 Manihot esculenta HOM05D004072 ORTHO05D005933 1.1e-35 154.5 205 46.8
SalBow8G4752 Salvia bowleyana HOM05D004072 ORTHO05D005933 1.5e-35 154.1 206 48.1
Gohir.A01G139400 Gossypium hirsutum HOM05D004072 ORTHO05D005933 2.5e-35 153.3 206 45.6
Potri.001G357700 Populus trichocarpa HOM05D004072 ORTHO05D005933 5.6e-35 152.1 206 47.1
Dinv32181 Davidia involucrata HOM05D004072 ORTHO05D005933 7.3e-35 151.8 206 45.6
TAR627G0650 Trochodendron aralioides HOM05D004072 ORTHO05D005933 9.5e-35 151.4 206 45.6
Lj1C1164T5 Lonicera japonica HOM05D004072 ORTHO05D005933 1.6e-34 150.6 205 46.8
Eucgr.E02482 Eucalyptus grandis HOM05D004072 ORTHO05D005933 2.8e-34 149.8 205 46.3
Potri.011G090150 Populus trichocarpa HOM05D004072 ORTHO05D005933 2.8e-34 149.8 208 46.2
Cc09_g08230 Coffea canephora HOM05D004072 ORTHO05D005933 3.6e-34 149.4 205 45.4
Nitab4.5_0001181g0040 Nicotiana tabacum HOM05D004072 ORTHO05D005933 4.7e-34 149.1 192 44.8
HPP92_001000 Vanilla planifolia HOM05D004072 ORTHO05D005933 4.7e-34 149.1 202 44.6
MELO3C007083.2 Cucumis melo HOM05D004072 ORTHO05D005933 6.2e-34 148.7 205 45.9
CsaV3_6G052280 Cucumis sativus L. HOM05D004072 ORTHO05D005933 6.2e-34 148.7 205 45.9
Nn3g20249 Nelumbo nucifera HOM05D004072 ORTHO05D005933 6.2e-34 148.7 205 45.4
Nitab4.5_0008398g0020 Nicotiana tabacum HOM05D004072 ORTHO05D005933 6.2e-34 148.7 205 44.4
CSS0029738 Camellia sinensis var. sinensis HOM05D004072 ORTHO05D005933 8.1e-34 148.3 205 45.9
Aa31LG10G6650 Aethionema arabicum HOM05D004072 ORTHO05D005933 1.8e-33 147.1 206 43.2
Ah.14g086190 Amaranthus hybridus HOM05D004072 ORTHO05D005933 1.8e-33 147.1 205 45.4
Oeu040089.1 Olea europaea HOM05D004072 ORTHO05D005933 2.3e-33 146.7 205 43.9
Actinidia07470 Actinidia chinensis HOM05D004072 ORTHO05D005933 3.1e-33 146.4 205 45.4
ClCG01G025080 Citrullus lanatus HOM05D004072 ORTHO05D005933 3.1e-33 146.4 205 45.4
THA.LOC104798608 Tarenaya hassleriana HOM05D004072 ORTHO05D005933 4.0e-33 146.0 209 45.0
Haze_05771 Corylus avellana HOM05D004072 ORTHO05D005933 5.2e-33 145.6 182 47.8
MD10G1254200 Malus domestica HOM05D004072 ORTHO05D005933 5.2e-33 145.6 205 45.4
Sp4g16960 Schrenkiella parvula HOM05D004072 ORTHO05D005933 5.2e-33 145.6 188 43.1
COL.COLO4_17682 Corchorus olitorius HOM05D004072 ORTHO05D005933 6.8e-33 145.2 154 53.2
Thhalv10016130m.g Eutrema salsugineum HOM05D004072 ORTHO05D005933 6.8e-33 145.2 188 42.6
AL4G30670 Arabidopsis lyrata HOM05D004072 ORTHO05D005933 8.9e-33 144.8 206 41.7
AT2G34680 Arabidopsis thaliana HOM05D004072 ORTHO05D005933 8.9e-33 144.8 206 42.2
Carub.0004s1637 Capsella rubella HOM05D004072 ORTHO05D005933 8.9e-33 144.8 206 41.3
PGR031G0553 Punica granatum HOM05D004072 ORTHO05D005933 8.9e-33 144.8 205 43.9
CiPaw.10G086200 Carya illinoinensis HOM05D004072 ORTHO05D005933 1.5e-32 144.1 205 44.4
Sabra16G0235400 Salix brachista HOM05D004072 ORTHO05D005933 2.0e-32 143.7 205 45.4
Sed0022754 Sechium edule HOM05D004072 ORTHO05D005933 2.0e-32 143.7 205 44.4
SEGI_16447 Sequoiadendron giganteum HOM05D004072 ORTHO05D005933 2.0e-32 143.7 243 38.7
Aqoxy1G01646_Aqoxy1G01645 Aquilegia oxysepala HOM05D004072 ORTHO05D005933 2.6e-32 143.3 209 44.0
EL10Ac8g19581 Beta vulgaris HOM05D004072 ORTHO05D005933 2.6e-32 143.3 200 45.0
Migut.M01885 Erythranthe guttata HOM05D004072 ORTHO05D005933 3.4e-32 142.9 185 47.6
MD05G1274500 Malus domestica HOM05D004072 ORTHO05D005933 3.4e-32 142.9 205 44.9
RcHm_v2.0_Chr5g0015701 Rosa chinensis HOM05D004072 ORTHO05D005933 3.4e-32 142.9 205 45.4
CANSAT35G1345 Cannabis sativa HOM05D004072 ORTHO05D005933 4.4e-32 142.5 206 44.7
CARHR128800 Cardamine hirsuta HOM05D004072 ORTHO05D005933 4.4e-32 142.5 201 40.8
ECA236G2867 Erigeron canadensis HOM05D004072 ORTHO05D005933 4.4e-32 142.5 205 43.4
FAN11G0415 Fragaria x ananassa HOM05D004072 ORTHO05D005933 5.8e-32 142.1 200 46.0
FAN16G0609 Fragaria x ananassa HOM05D004072 ORTHO05D005933 5.8e-32 142.1 200 45.0
FAN25G0515 Fragaria x ananassa HOM05D004072 ORTHO05D005933 5.8e-32 142.1 200 45.0
Solyc02g070260.4 Solanum lycopersicum HOM05D004072 ORTHO05D005933 5.8e-32 142.1 205 43.4
Sopen02g019350 Solanum pennellii HOM05D004072 ORTHO05D005933 5.8e-32 142.1 205 43.4
EL10Ac9g22637 Beta vulgaris HOM05D004072 ORTHO05D005933 7.6e-32 141.7 219 42.5
FvH4_3g09950 Fragaria vesca HOM05D004072 ORTHO05D005933 7.6e-32 141.7 205 44.9
PSO675G3632 Papaver somniferum HOM05D004072 ORTHO05D005933 7.6e-32 141.7 206 42.7
VMungo1309G2749 Vigna mungo HOM05D004072 ORTHO05D005933 7.6e-32 141.7 205 43.9
MSTRG.16285 Avicennia marina HOM05D004072 ORTHO05D005933 9.9e-32 141.4 188 45.7
PSO541G2055 Papaver somniferum HOM05D004072 ORTHO05D005933 9.9e-32 141.4 206 43.2
Phvul.009G217700 Phaseolus vulgaris HOM05D004072 ORTHO05D005933 1.3e-31 141.0 205 43.9
FAN21G2972 Fragaria x ananassa HOM05D004072 ORTHO05D005933 1.7e-31 140.6 200 45.5
Glyma.15G192700 Glycine max HOM05D004072 ORTHO05D005933 1.7e-31 140.6 205 43.9
Hund21569 Selenicereus undatus HOM05D004072 ORTHO05D005933 1.7e-31 140.6 205 43.4
C03p22430 Brassica napus HOM05D004072 ORTHO05D005933 2.2e-31 140.2 188 41.0
AUR62042015 Chenopodium quinoa HOM05D004072 ORTHO05D005933 2.2e-31 140.2 205 42.4
Glyma.09G084300 Glycine max HOM05D004072 ORTHO05D005933 2.9e-31 139.8 205 43.9
Lj6g0006190 Lotus japonicus HOM05D004072 ORTHO05D005933 3.8e-31 139.4 205 42.0
Os07g0148800 Oryza sativa ssp. japonica HOM05D004072 ORTHO05D005933 3.8e-31 139.4 206 41.3
RcHm_v2.0_Chr1g0313161 Rosa chinensis HOM05D004072 ORTHO05D005933 3.8e-31 139.4 205 44.4
A03p19230 Brassica napus HOM05D004072 ORTHO05D005933 4.9e-31 139.0 188 40.4
Medtr2g048210 Medicago truncatula HOM05D004072 ORTHO05D005933 4.9e-31 139.0 203 43.3
ATR0165G006 Amborella trichopoda HOM05D004072 ORTHO05D005933 8.4e-31 138.3 206 42.7
HanXRQChr04g0119071 Helianthus annuus HOM05D004072 ORTHO05D005933 8.4e-31 138.3 187 44.9
BolC3t14626H Brassica oleracea HOM05D004072 ORTHO05D005933 1.1e-30 137.9 188 40.4
Lsat_1_v5_gn_7_29400 Lactuca sativa HOM05D004072 ORTHO05D005933 1.1e-30 137.9 205 43.9
BraA03t11178Z Brassica rapa HOM05D004072 ORTHO05D005933 1.4e-30 137.5 188 40.4
Prupe.4G089200 Prunus persica HOM05D004072 ORTHO05D005933 1.4e-30 137.5 151 52.3
arahy.Tifrunner.gnm1.ann1.39P5NE Arachis hypogaea HOM05D004072 ORTHO05D005933 1.9e-30 137.1 205 40.5
arahy.Tifrunner.gnm1.ann1.WCP5HM Arachis hypogaea HOM05D004072 ORTHO05D005933 1.9e-30 137.1 205 40.5
SMO271G0077 Selaginella moellendorffii HOM05D004072 ORTHO05D005933 3.2e-30 136.3 206 40.8
SMO308G0046 Selaginella moellendorffii HOM05D004072 ORTHO05D005933 3.2e-30 136.3 206 40.8
TPR.G28617 Trifolium pratense HOM05D004072 ORTHO05D005933 3.2e-30 136.3 205 42.4
CiPaw.09G116100 Carya illinoinensis HOM05D004072 ORTHO05D005933 4.1e-30 136.0 205 42.4
Psat1g019120 Pisum sativum HOM05D004072 ORTHO05D005933 7.1e-30 135.2 188 43.1
Zm00001eb299970 Zea mays HOM05D004072 ORTHO05D005933 7.1e-30 135.2 206 39.3
Lalb_Chr08g0233191 Lupinus albus HOM05D004072 ORTHO05D005933 9.2e-30 134.8 187 43.3
AUR62038603 Chenopodium quinoa HOM05D004072 ORTHO05D005933 1.6e-29 134.0 205 41.5
Pp3c17_7410 Physcomitrium patens HOM05D004072 ORTHO05D005933 1.6e-29 134.0 200 41.5
Pp3c14_11530 Physcomitrium patens HOM05D004072 ORTHO05D005933 6.0e-29 132.1 200 41.5
Ca_02513_v3 Cicer arietinum L. HOM05D004072 ORTHO05D005933 1.0e-28 131.3 205 41.5
Mapoly0023s0068 Marchantia polymorpha HOM05D004072 ORTHO05D005933 1.7e-28 130.6 206 38.8
CAN.G660.42 Capsicum annuum HOM05D004072 ORTHO05D005933 2.3e-28 130.2 205 40.0
PGSC0003DMG400021174 Solanum tuberosum HOM05D004072 ORTHO05D005933 2.3e-28 130.2 83 72.3
vmacro03398 Vaccinium macrocarpon HOM05D004072 ORTHO05D005933 2.3e-28 130.2 83 72.3
QL05p053334 Quercus lobata HOM05D004072 ORTHO05D005933 1.1e-27 127.9 78 78.2
TAR626G0996 Trochodendron aralioides HOM05D004072 ORTHO05D005933 4.3e-27 125.9 83 69.9
RcHm_v2.0_Chr5g0015771 Rosa chinensis HOM05D004072 ORTHO05D005933 6.2e-26 122.1 140 52.9
Cpa.g.sc17.87 Carica papaya HOM05D004072 ORTHO05D005933 6.6e-20 102.1 86 59.3
QL05p053312 Quercus lobata HOM05D004072 ORTHO05D005933 3.3e-19 99.8 85 61.2
CBR_g34931 Chara braunii HOM05D000019 ORTHO05D001702 4.3e-19 99.4 81 53.1
BcaC01g05784 Brassica carinata HOM05D004072 ORTHO05D005933 6.9e-17 92.0 192 31.8
Peaxi162Scf00670g00114 Petunia axillaris HOM05D004072 ORTHO05D005933 9.0e-17 91.7 167 37.1
Sc24g0001460 Simmondsia chinensis HOM05D004072 ORTHO05D005933 2.0e-16 90.5 168 36.9
Rhsim13G0119900 Rhododendron simsii HOM05D004072 ORTHO05D005933 6.4e-15 85.5 85 49.4
CDE02G3068 Ceratophyllum demersum HOM05D004072 ORTHO05D005933 7.1e-14 82.0 85 50.6
DCAR_003864 Daucus carota HOM05D004072 ORTHO05D005933 1.6e-13 80.9 85 47.1
THA.LOC104813323 Tarenaya hassleriana HOM05D004072 ORTHO05D005933 2.3e-12 77.0 76 52.6
Medtr8g464200 Medicago truncatula HOM05D004072 ORTHO05D005933 6.7e-12 75.5 240 28.3
CSS0044654 Camellia sinensis var. sinensis HOM05D004072 ORTHO05D005933 8.7e-12 75.1 72 54.2
Cc09_g08270 Coffea canephora HOM05D004072 ORTHO05D005933 1.1e-11 74.7 52 69.2
HPP92_000967 Vanilla planifolia HOM05D004072 ORTHO05D005933 1.8e-09 67.4 85 43.5
Potri.011G090200 Populus trichocarpa HOM05D004072 ORTHO05D005933 4.0e-09 66.2 35 82.9
Cc09_g08260 Coffea canephora HOM05D004072 ORTHO05D005933 2.0e-08 63.9 54 63.0
Atru.chr10.903 Acer truncatum HOM05D004072 ORTHO05D021063 4.5e-08 62.8 43 81.4
Rhsim07G0133800 Rhododendron simsii HOM05D004072 ORTHO05D005933 1.9e-06 57.4 77 40.3
RcHm_v2.0_Chr1g0313151 Rosa chinensis HOM05D004072 ORTHO05D005933 9.3e-06 55.1 38 73.7


User provided reference genes

Program Settings