Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr2.667 Acer truncatum HOM05D004408 ORTHO05D005486 6.7e-73 277.3 148 100.0
Ciclev10000022m.g Citrus clementina HOM05D004408 ORTHO05D005486 2.1e-66 255.8 147 91.2
GSVIVG01021873001 Vitis vinifera HOM05D004408 ORTHO05D005486 3.9e-65 251.5 147 88.4
Manes.09G157400 Manihot esculenta HOM05D004408 ORTHO05D005486 3.3e-64 248.4 147 88.4
Sabra13G0034100 Salix brachista HOM05D004408 ORTHO05D005486 9.7e-64 246.9 145 87.6
CSS0006895 Camellia sinensis var. sinensis HOM05D004408 ORTHO05D005486 3.7e-63 245.0 147 86.4
CSS0009913 Camellia sinensis var. sinensis HOM05D004408 ORTHO05D005486 3.7e-63 245.0 147 86.4
arahy.Tifrunner.gnm1.ann1.4PM453 Arachis hypogaea HOM05D004408 ORTHO05D005486 1.4e-62 243.0 147 85.7
MD04G1218000 Malus domestica HOM05D004408 ORTHO05D005486 1.8e-62 242.7 147 85.0
Potri.013G035100 Populus trichocarpa HOM05D004408 ORTHO05D005486 1.8e-62 242.7 147 86.4
TAR365G0706 Trochodendron aralioides HOM05D004408 ORTHO05D005486 2.4e-62 242.3 147 85.0
VMungo0720G1928 Vigna mungo HOM05D004408 ORTHO05D005486 3.1e-62 241.9 147 84.4
Hund06994 Selenicereus undatus HOM05D004408 ORTHO05D005486 7.0e-62 240.7 147 85.7
Ca_10066_v3 Cicer arietinum L. HOM05D004408 ORTHO05D005486 9.1e-62 240.4 147 83.7
AUR62000963 Chenopodium quinoa HOM05D004408 ORTHO05D005486 1.2e-61 240.0 147 83.7
AUR62005003 Chenopodium quinoa HOM05D004408 ORTHO05D005486 1.2e-61 240.0 147 83.7
Glyma.20G229100 Glycine max HOM05D004408 ORTHO05D005486 2.0e-61 239.2 147 83.7
Nn1g02333 Nelumbo nucifera HOM05D004408 ORTHO05D005486 2.0e-61 239.2 147 84.4
Phvul.007G184950 Phaseolus vulgaris HOM05D004408 ORTHO05D005486 2.6e-61 238.8 147 83.7
Psat6g147640 Pisum sativum HOM05D004408 ORTHO05D005486 2.6e-61 238.8 147 83.0
TPR.G11136 Trifolium pratense HOM05D004408 ORTHO05D005486 2.6e-61 238.8 147 83.7
Medtr1g081710 Medicago truncatula HOM05D004408 ORTHO05D005486 3.5e-61 238.4 147 82.3
Prupe.6G338000 Prunus persica HOM05D004408 ORTHO05D005486 3.5e-61 238.4 147 83.0
Duzib177G0039 Durio zibethinus HOM05D004408 ORTHO05D005486 5.9e-61 237.7 147 83.0
Glyma.10G159500 Glycine max HOM05D004408 ORTHO05D005486 5.9e-61 237.7 147 83.0
Thecc.05G290600 Theobroma cacao HOM05D004408 ORTHO05D005486 1.0e-60 236.9 147 83.0
Aqoxy2G03396 Aquilegia oxysepala HOM05D004408 ORTHO05D005486 1.3e-60 236.5 147 80.3
THA.LOC104818650 Tarenaya hassleriana HOM05D004408 ORTHO05D005486 1.3e-60 236.5 147 83.7
Eucgr.B01725 Eucalyptus grandis HOM05D004408 ORTHO05D005486 2.2e-60 235.7 147 83.0
Ah.04g162440 Amaranthus hybridus HOM05D004408 ORTHO05D005486 2.9e-60 235.3 147 83.0
Lj5g0005673 Lotus japonicus HOM05D004408 ORTHO05D005486 2.9e-60 235.3 147 83.0
TWI56G0724 Tripterygium wilfordii HOM05D004408 ORTHO05D005486 2.9e-60 235.3 147 82.3
Lalb_Chr21g0310861 Lupinus albus HOM05D004408 ORTHO05D005486 5.0e-60 234.6 147 81.6
FvH4_6g10420 Fragaria vesca HOM05D004408 ORTHO05D005486 6.5e-60 234.2 143 85.3
SalBow8G3789 Salvia bowleyana HOM05D004408 ORTHO05D005486 6.5e-60 234.2 146 82.9
RcHm_v2.0_Chr3g0461321 Rosa chinensis HOM05D004408 ORTHO05D005486 1.5e-59 233.0 143 83.9
Gorai.007G286000 Gossypium raimondii HOM05D004408 ORTHO05D005486 1.9e-59 232.6 147 82.3
Lalb_Chr06g0167911 Lupinus albus HOM05D004408 ORTHO05D005486 1.9e-59 232.6 145 82.1
CANSAT54G0296 Cannabis sativa HOM05D004408 ORTHO05D005486 2.5e-59 232.3 145 84.1
PSO761G0213 Papaver somniferum HOM05D004408 ORTHO05D005486 3.2e-59 231.9 147 80.3
Cfa006478 Carpinus fangiana HOM05D004408 ORTHO05D005486 4.2e-59 231.5 145 83.4
FAN05G2697 Fragaria x ananassa HOM05D004408 ORTHO05D005486 4.2e-59 231.5 143 83.9
Rhsim05G0150300 Rhododendron simsii HOM05D004408 ORTHO05D005486 4.2e-59 231.5 159 78.6
ATR0697G205 Amborella trichopoda HOM05D004408 ORTHO05D005486 5.5e-59 231.1 145 81.4
MSTRG.20441 Avicennia marina HOM05D004408 ORTHO05D005486 9.4e-59 230.3 146 79.5
Migut.B01071 Erythranthe guttata HOM05D004408 ORTHO05D005486 9.4e-59 230.3 146 80.1
PSO210G7697 Papaver somniferum HOM05D004408 ORTHO05D005486 9.4e-59 230.3 147 79.6
FAN02G3979 Fragaria x ananassa HOM05D004408 ORTHO05D005486 1.2e-58 229.9 143 83.2
COL.COLO4_15257 Corchorus olitorius HOM05D004408 ORTHO05D005486 2.1e-58 229.2 147 79.6
ClCG03G016280 Citrullus lanatus HOM05D004408 ORTHO05D005486 3.6e-58 228.4 147 78.9
FAN09G0115 Fragaria x ananassa HOM05D004408 ORTHO05D005486 3.6e-58 228.4 143 83.2
CAN.G167.11 Capsicum annuum HOM05D004408 ORTHO05D005486 8.0e-58 227.3 147 81.6
Nitab4.5_0000921g0020 Nicotiana tabacum HOM05D004408 ORTHO05D005486 8.0e-58 227.3 147 82.3
HPP92_012131 Vanilla planifolia HOM05D004408 ORTHO05D005486 8.0e-58 227.3 147 78.2
CsaV3_1G039670 Cucumis sativus L. HOM05D004408 ORTHO05D005486 1.8e-57 226.1 147 78.2
DCAR_001927 Daucus carota HOM05D004408 ORTHO05D005486 1.8e-57 226.1 147 80.3
A06p37770 Brassica napus HOM05D004408 ORTHO05D005486 2.3e-57 225.7 146 80.1
MELO3C015391.2 Cucumis melo HOM05D004408 ORTHO05D005486 3.0e-57 225.3 147 77.6
Thhalv10003510m.g Eutrema salsugineum HOM05D004408 ORTHO05D005486 3.0e-57 225.3 146 80.1
Sp2g20340 Schrenkiella parvula HOM05D004408 ORTHO05D005486 4.0e-57 224.9 146 79.5
Solyc09g018340.2 Solanum lycopersicum HOM05D004408 ORTHO05D005486 4.0e-57 224.9 147 81.0
AL6G40140 Arabidopsis lyrata HOM05D004408 ORTHO05D005486 5.2e-57 224.6 145 80.7
BcaC03g17767 Brassica carinata HOM05D004408 ORTHO05D005486 5.2e-57 224.6 146 79.5
A02p38480 Brassica napus HOM05D004408 ORTHO05D005486 5.2e-57 224.6 146 79.5
C02p57800 Brassica napus HOM05D004408 ORTHO05D005486 5.2e-57 224.6 146 79.5
Sc06g0003710 Simmondsia chinensis HOM05D004408 ORTHO05D005486 5.2e-57 224.6 147 79.6
BcaB07g34188 Brassica carinata HOM05D004408 ORTHO05D005486 6.7e-57 224.2 146 78.8
Sopen09g011530 Solanum pennellii HOM05D004408 ORTHO05D005486 2.0e-56 222.6 147 80.3
AT5G27970 Arabidopsis thaliana HOM05D004408 ORTHO05D005486 2.6e-56 222.2 145 80.0
HanXRQChr11g0322991 Helianthus annuus HOM05D004408 ORTHO05D005486 2.6e-56 222.2 147 77.6
arahy.Tifrunner.gnm1.ann1.6Q424B Arachis hypogaea HOM05D004408 ORTHO05D005486 3.3e-56 221.9 147 81.0
Carub.0006s2545 Capsella rubella HOM05D004408 ORTHO05D005486 3.3e-56 221.9 145 79.3
ECA232G0933 Erigeron canadensis HOM05D004408 ORTHO05D005486 5.7e-56 221.1 147 77.6
Peaxi162Scf01827g00009 Petunia axillaris HOM05D004408 ORTHO05D005486 5.7e-56 221.1 147 78.2
Lsat_1_v5_gn_4_142681 Lactuca sativa HOM05D004408 ORTHO05D005486 9.7e-56 220.3 144 77.8
Zm00001eb151860 Zea mays HOM05D004408 ORTHO05D005486 3.7e-55 218.4 147 76.2
unitig_0.g2223 Utricularia gibba HOM05D004408 ORTHO05D005486 3.1e-54 215.3 146 74.0
BcaNung04259 Brassica carinata HOM05D004408 ORTHO05D005486 9.1e-54 213.8 157 73.2
C07p40460 Brassica napus HOM05D004408 ORTHO05D005486 1.6e-53 213.0 168 69.6
BolC7t44581H Brassica oleracea HOM05D004408 ORTHO05D005486 1.6e-53 213.0 168 69.6
BraA02t08826Z Brassica rapa HOM05D004408 ORTHO05D005486 2.0e-53 212.6 166 69.9
BraA06t26696Z Brassica rapa HOM05D004408 ORTHO05D005486 2.7e-53 212.2 170 68.8
Cpa.g.sc117.56 Carica papaya HOM05D004408 ORTHO05D005486 5.0e-52 208.0 227 55.9
Cc02_g31380 Coffea canephora HOM05D004408 ORTHO05D005486 1.1e-51 206.8 197 60.4
EL10Ac4g09198 Beta vulgaris HOM05D004408 ORTHO05D005486 5.5e-51 204.5 147 74.8
BolC2t11853H Brassica oleracea HOM05D004408 ORTHO05D005486 9.4e-51 203.8 178 65.2
SHI08350 Sapria himalayana HOM05D004408 ORTHO05D005486 9.4e-51 203.8 145 72.4
SEGI_03716 Sequoiadendron giganteum HOM05D004408 ORTHO05D005486 6.1e-50 201.1 127 81.1
Nitab4.5_0000162g0020 Nicotiana tabacum HOM05D004408 ORTHO05D005486 1.8e-49 199.5 147 74.8
AagrBONN_evm.TU.Sc2ySwM_228.3627 Anthoceros agrestis HOM05D004408 ORTHO05D005486 4.0e-49 198.4 145 66.2
Mapoly0167s0007 Marchantia polymorpha HOM05D004408 ORTHO05D005486 1.2e-48 196.8 145 66.9
PGR083G2727 Punica granatum HOM05D004408 ORTHO05D005486 1.1e-46 190.3 147 70.7
CiPaw.07G007800 Carya illinoinensis HOM05D004408 ORTHO05D005486 1.3e-44 183.3 110 87.3
SMO169G0216 Selaginella moellendorffii HOM05D004408 ORTHO05D005486 5.0e-44 181.4 145 59.3
MBI05_g21270_MAGBIO Magnolia biondii HOM05D004408 ORTHO05D005486 2.5e-43 179.1 114 78.9
CBR_g18881 Chara braunii HOM05D004408 ORTHO05D005486 6.8e-41 171.0 147 57.1
CDE10G0751 Ceratophyllum demersum HOM05D004408 ORTHO05D005486 4.9e-39 164.9 109 78.0
QL03p022358 Quercus lobata HOM05D004408 ORTHO05D005486 4.5e-37 158.3 97 86.6
CBR_g23067 Chara braunii HOM05D004408 ORTHO05D005486 2.3e-36 156.0 143 55.2
Aa31LG11G8830 Aethionema arabicum HOM05D004408 ORTHO05D005486 8.6e-36 154.1 145 60.7
Pp3c17_790 Physcomitrium patens HOM05D004408 ORTHO05D005486 1.9e-35 152.9 147 54.4
Gohir.A11G256300 Gossypium hirsutum HOM05D004408 ORTHO05D005486 1.0e-33 147.1 91 79.1
Gohir.D11G266000 Gossypium hirsutum HOM05D004408 ORTHO05D005486 1.8e-33 146.4 91 79.1
Os01g0772700 Oryza sativa ssp. japonica HOM05D004408 ORTHO05D005486 1.2e-29 133.7 132 56.1
SMO116G0400 Selaginella moellendorffii HOM05D004408 ORTHO05D005486 2.3e-20 102.8 90 52.2
vmacro19680 Vaccinium macrocarpon HOM05D004408 ORTHO05D005486 3.4e-16 89.0 51 84.3
Actinidia17457 Actinidia chinensis HOM05D004408 ORTHO05D005486 6.4e-15 84.7 57 71.9
MBI05_g21273_MAGBIO Magnolia biondii HOM05D004408 ORTHO05D005486 1.5e-08 63.5 35 94.3
Gohir.D11G265950 Gossypium hirsutum HOM05D004408 ORTHO05D005486 3.4e-08 62.4 36 91.7


User provided reference genes

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