Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr2.657 Acer truncatum HOM05D006992 ORTHO05D008752 2.5e-113 412.1 210 100.0
CSS0031345 Camellia sinensis var. sinensis HOM05D006992 ORTHO05D008752 7.5e-86 320.9 201 81.1
Actinidia33837 Actinidia chinensis HOM05D006992 ORTHO05D008752 1.3e-82 310.1 209 75.1
Ciclev10002483m.g Citrus clementina HOM05D006992 ORTHO05D008752 1.7e-82 309.7 211 75.4
CiPaw.07G008900 Carya illinoinensis HOM05D006992 ORTHO05D008752 2.3e-82 309.3 198 79.3
QL03p000176 Quercus lobata HOM05D006992 ORTHO05D008752 1.1e-81 307.0 208 74.5
CiPaw.08G178000 Carya illinoinensis HOM05D006992 ORTHO05D008752 1.5e-81 306.6 193 79.3
MD12G1234200 Malus domestica HOM05D006992 ORTHO05D008752 1.5e-81 306.6 210 73.3
Thecc.05G291400 Theobroma cacao HOM05D006992 ORTHO05D008752 3.3e-81 305.4 187 81.3
TWI36G0139 Tripterygium wilfordii HOM05D006992 ORTHO05D008752 5.6e-81 304.7 219 73.1
PGR083G1999 Punica granatum HOM05D006992 ORTHO05D008752 9.5e-81 303.9 208 75.0
RcHm_v2.0_Chr3g0452481 Rosa chinensis HOM05D006992 ORTHO05D008752 9.5e-81 303.9 193 76.7
MELO3C015384.2 Cucumis melo HOM05D006992 ORTHO05D008752 2.1e-80 302.8 189 79.9
ClCG03G016340 Citrullus lanatus HOM05D006992 ORTHO05D008752 6.2e-80 301.2 189 79.4
FvH4_6g03930 Fragaria vesca HOM05D006992 ORTHO05D008752 6.2e-80 301.2 213 71.4
Eucgr.B01740 Eucalyptus grandis HOM05D006992 ORTHO05D008752 8.0e-80 300.8 204 74.0
Nn3g21348 Nelumbo nucifera HOM05D006992 ORTHO05D008752 2.3e-79 299.3 221 69.7
Sed0003148 Sechium edule HOM05D006992 ORTHO05D008752 3.1e-79 298.9 189 79.4
Cfa006481 Carpinus fangiana HOM05D006992 ORTHO05D008752 6.8e-79 297.7 221 71.9
Lsat_1_v5_gn_2_67081 Lactuca sativa HOM05D006992 ORTHO05D008752 6.8e-79 297.7 191 77.0
Prupe.6G337300 Prunus persica HOM05D006992 ORTHO05D008752 8.9e-79 297.4 203 73.4
CsaV3_1G039620 Cucumis sativus L. HOM05D006992 ORTHO05D008752 1.5e-78 296.6 189 77.8
HanXRQChr14g0445751 Helianthus annuus HOM05D006992 ORTHO05D008752 2.6e-78 295.8 204 73.5
THA.LOC104818652 Tarenaya hassleriana HOM05D006992 ORTHO05D008752 2.6e-78 295.8 202 73.3
Gorai.013G122400 Gossypium raimondii HOM05D006992 ORTHO05D008752 5.8e-78 294.7 224 68.8
COL.COLO4_13636 Corchorus olitorius HOM05D004868 ORTHO05D006030 9.8e-78 293.9 195 76.4
TAR633G1762 Trochodendron aralioides HOM05D006992 ORTHO05D008752 9.8e-78 293.9 202 70.8
Gohir.D13G108900 Gossypium hirsutum HOM05D006992 ORTHO05D008752 1.7e-77 293.1 224 68.3
Gohir.A13G106100 Gossypium hirsutum HOM05D006992 ORTHO05D008752 2.2e-77 292.7 196 75.0
CAN.G424.13 Capsicum annuum HOM05D006992 ORTHO05D008752 3.7e-77 292.0 209 71.3
FAN09G1577 Fragaria x ananassa HOM05D000167 ORTHO05D000640 3.7e-77 292.0 208 71.6
AL3G15290 Arabidopsis lyrata HOM05D006992 ORTHO05D008752 4.9e-77 291.6 197 75.6
Manes.09G157800 Manihot esculenta HOM05D006992 ORTHO05D008752 4.9e-77 291.6 195 76.4
QL03p000513 Quercus lobata HOM05D006992 ORTHO05D008752 6.4e-77 291.2 231 67.1
FAN14G0596 Fragaria x ananassa HOM05D006992 ORTHO05D008752 8.3e-77 290.8 221 67.9
Oeu012474.1 Olea europaea HOM05D006992 ORTHO05D008752 1.1e-76 290.4 208 72.6
FAN05G0877 Fragaria x ananassa HOM05D000167 ORTHO05D000640 1.4e-76 290.0 222 68.0
Rhsim05G0148900 Rhododendron simsii HOM05D006992 ORTHO05D008752 2.4e-76 289.3 203 74.4
Carub.0003s0417 Capsella rubella HOM05D006992 ORTHO05D008752 4.1e-76 288.5 197 74.1
Sc09g0003710 Simmondsia chinensis HOM05D006992 ORTHO05D008752 7.1e-76 287.7 195 73.3
BcaB04g19286 Brassica carinata HOM05D006992 ORTHO05D008752 1.6e-75 286.6 197 73.6
FAN05G5181 Fragaria x ananassa HOM05D006992 ORTHO05D008752 1.6e-75 286.6 221 67.4
Sp3g03770 Schrenkiella parvula HOM05D006992 ORTHO05D008752 1.6e-75 286.6 197 74.1
Thhalv10021439m.g Eutrema salsugineum HOM05D006992 ORTHO05D008752 2.1e-75 286.2 195 73.3
Phvul.006G097900 Phaseolus vulgaris HOM05D006992 ORTHO05D008752 3.5e-75 285.4 211 68.7
BcaC01g04339 Brassica carinata HOM05D006992 ORTHO05D008752 6.0e-75 284.6 196 73.5
CARHR079260 Cardamine hirsuta HOM05D006992 ORTHO05D008752 7.8e-75 284.3 195 73.3
vmacro19674 Vaccinium macrocarpon HOM05D006992 ORTHO05D008752 7.8e-75 284.3 210 72.4
CDE02G3150 Ceratophyllum demersum HOM05D006992 ORTHO05D008752 1.7e-74 283.1 188 71.8
Cc02_g31290 Coffea canephora HOM05D006992 ORTHO05D008752 2.3e-74 282.7 176 80.7
AT3G04950 Arabidopsis thaliana HOM05D006992 ORTHO05D008752 3.0e-74 282.3 195 72.8
Glyma.19G241400 Glycine max HOM05D006992 ORTHO05D008752 3.0e-74 282.3 191 73.3
GSVIVG01021889001 Vitis vinifera HOM05D006992 ORTHO05D008752 3.0e-74 282.3 176 79.5
Solyc02g079130.3 Solanum lycopersicum HOM05D006992 ORTHO05D008752 8.6e-74 280.8 205 67.8
Sopen02g023930 Solanum pennellii HOM05D006992 ORTHO05D008752 1.1e-73 280.4 205 67.8
Gorai.007G286500 Gossypium raimondii HOM05D006992 ORTHO05D008752 1.9e-73 279.6 221 65.6
PGSC0003DMG400022358 Solanum tuberosum HOM05D006992 ORTHO05D008752 1.9e-73 279.6 201 69.2
BraA03t12570Z Brassica rapa HOM05D006992 ORTHO05D008752 2.5e-73 279.3 191 74.3
FAN02G1922 Fragaria x ananassa HOM05D000167 ORTHO05D000640 3.3e-73 278.9 222 66.7
CANSAT54G1892 Cannabis sativa HOM05D006992 ORTHO05D008752 9.5e-73 277.3 194 69.6
Medtr7g114390 Medicago truncatula HOM05D006992 ORTHO05D008752 9.5e-73 277.3 213 67.1
PSO210G3204 Papaver somniferum HOM05D006992 ORTHO05D008752 1.2e-72 276.9 189 71.4
Ca_09397_v3 Cicer arietinum L. HOM05D006992 ORTHO05D008752 2.1e-72 276.2 196 70.4
PSO832G0773 Papaver somniferum HOM05D006992 ORTHO05D008752 2.8e-72 275.8 189 70.9
A03p33950 Brassica napus HOM05D003164 ORTHO05D003575 4.7e-72 275.0 190 73.7
ECA238G1326 Erigeron canadensis HOM05D006992 ORTHO05D008752 4.7e-72 275.0 174 78.7
DCAR_022834 Daucus carota HOM05D006992 ORTHO05D008752 6.2e-72 274.6 209 69.4
Hund06999 Selenicereus undatus HOM05D006992 ORTHO05D008752 6.2e-72 274.6 189 73.0
BolC3t16415H Brassica oleracea HOM05D006992 ORTHO05D008752 8.1e-72 274.2 190 73.7
Migut.N01946 Erythranthe guttata HOM05D006992 ORTHO05D008752 2.3e-71 272.7 198 68.7
Potri.013G034100 Populus trichocarpa HOM05D006992 ORTHO05D008752 4.0e-71 271.9 192 72.4
C03p41330 Brassica napus HOM05D003164 ORTHO05D003575 5.2e-71 271.6 189 73.0
Gohir.A11G256900 Gossypium hirsutum HOM05D006992 ORTHO05D008752 5.2e-71 271.6 221 63.8
Nitab4.5_0004284g0080 Nicotiana tabacum HOM05D006992 ORTHO05D008752 1.5e-70 270.0 186 75.8
EL10Ac4g09207 Beta vulgaris HOM05D006992 ORTHO05D008752 2.0e-70 269.6 212 66.5
TPR.G6916 Trifolium pratense HOM05D006992 ORTHO05D008752 2.6e-70 269.2 219 65.3
Nitab4.5_0001410g0140 Nicotiana tabacum HOM05D006992 ORTHO05D008752 4.4e-70 268.5 206 69.4
Sabra13G0033300 Salix brachista HOM05D006992 ORTHO05D008752 7.5e-70 267.7 186 72.0
AUR62000954 Chenopodium quinoa HOM05D006992 ORTHO05D008752 1.3e-69 266.9 191 70.2
Psat0s2796g0040 Pisum sativum HOM05D006992 ORTHO05D008752 1.1e-68 263.8 219 63.9
Lalb_Chr18g0045231 Lupinus albus HOM05D006992 ORTHO05D008752 3.2e-68 262.3 196 67.9
Dinv17742 Davidia involucrata HOM05D004868 ORTHO05D006030 4.1e-68 261.9 146 87.0
Peaxi162Scf00103g00035 Petunia axillaris HOM05D006992 ORTHO05D008752 5.4e-68 261.5 178 74.2
ATR0706G207 Amborella trichopoda HOM05D006992 ORTHO05D008752 9.2e-68 260.8 201 67.2
Lj1g0025869 Lotus japonicus HOM05D006992 ORTHO05D008752 2.7e-67 259.2 214 64.0
Aqoxy5G00680 Aquilegia oxysepala HOM05D006992 ORTHO05D008752 6.6e-66 254.6 199 65.8
Haze_04310 Corylus avellana HOM05D006992 ORTHO05D008752 8.6e-66 254.2 281 54.1
SalBow3G4063 Salvia bowleyana HOM05D006992 ORTHO05D008752 8.6e-66 254.2 207 63.3
SGA_v2.0_scaffold80G25908 Striga asiatica HOM05D006992 ORTHO05D008752 1.4e-63 246.9 193 65.3
arahy.Tifrunner.gnm1.ann1.ZZK2AU Arachis hypogaea HOM05D006992 ORTHO05D008752 5.8e-62 241.5 212 59.0
Migut.N01944 Erythranthe guttata HOM05D006992 ORTHO05D008752 7.6e-62 241.1 191 63.9
Lj7A478T92 Lonicera japonica HOM05D006992 ORTHO05D008752 8.4e-61 237.7 264 53.0
arahy.Tifrunner.gnm1.ann1.26USVU Arachis hypogaea HOM05D006992 ORTHO05D008752 3.2e-60 235.7 207 59.4
AUR62005014 Chenopodium quinoa HOM05D006992 ORTHO05D008752 7.1e-60 234.6 191 64.9
unitig_746.g26840 Utricularia gibba HOM05D006992 ORTHO05D008752 5.6e-57 224.9 140 77.1
Os06g0298500 Oryza sativa ssp. japonica HOM05D006992 ORTHO05D008752 1.4e-55 220.3 186 59.7
Zm00001eb381040 Zea mays HOM05D006992 ORTHO05D008752 7.6e-54 214.5 186 58.1
Gohir.D11G266700 Gossypium hirsutum HOM05D006992 ORTHO05D008752 8.4e-53 211.1 178 64.0
HPP92_017993 Vanilla planifolia HOM05D006992 ORTHO05D008752 2.4e-52 209.5 190 55.3
HPP92_026697 Vanilla planifolia HOM05D006992 ORTHO05D008752 3.2e-52 209.1 190 55.3
SEGI_08689 Sequoiadendron giganteum HOM05D006992 ORTHO05D008752 2.7e-51 206.1 186 56.5
VMungo0540G1333 Vigna mungo HOM05D006992 ORTHO05D008752 2.3e-50 203.0 149 69.1
Ca_30169_v3 Cicer arietinum L. HOM05D006992 ORTHO05D008752 3.9e-50 202.2 151 68.9
Glyma.03G244000 Glycine max HOM05D006992 ORTHO05D008752 1.3e-48 197.2 155 63.9
Cpa.g.sc117.39 Carica papaya HOM05D004868 ORTHO05D006030 5.1e-42 175.3 102 82.4
PSO210G4341 Papaver somniferum HOM05D006992 ORTHO05D008752 1.1e-39 167.5 181 53.6
PSO339G2351 Papaver somniferum HOM05D006992 ORTHO05D008752 1.1e-39 167.5 181 51.9
PSO384G0024 Papaver somniferum HOM05D006992 ORTHO05D008752 1.3e-37 160.6 181 50.3
Gohir.D03G094700 Gossypium hirsutum HOM05D006992 ORTHO05D008752 4.2e-36 155.6 98 72.4
Aa31LG5G15340 Aethionema arabicum HOM05D006992 ORTHO05D008752 6.2e-32 141.7 80 85.0
SEGI_13740 Sequoiadendron giganteum HOM05D006992 ORTHO05D008752 1.8e-31 140.2 142 50.7
FAN05G0951 Fragaria x ananassa HOM05D000167 ORTHO05D000640 3.4e-30 136.0 166 50.0
Gohir.D07G141600 Gossypium hirsutum HOM05D006992 ORTHO05D008752 5.5e-28 128.6 78 75.6
Gorai.001G169400 Gossypium raimondii HOM05D006992 ORTHO05D008752 7.1e-28 128.3 81 74.1
Gohir.D12G044200 Gossypium hirsutum HOM05D006992 ORTHO05D008752 1.3e-26 124.0 81 71.6
RcHm_v2.0_Chr3g0452521 Rosa chinensis HOM05D006992 ORTHO05D008752 8.7e-26 121.3 84 72.6
SMO361G0250 Selaginella moellendorffii HOM05D006992 ORTHO05D008752 1.8e-23 113.6 214 36.4
RcHm_v2.0_Chr1g0321781 Rosa chinensis HOM05D006992 ORTHO05D008752 1.6e-19 100.5 61 75.4
RcHm_v2.0_Chr6g0246461 Rosa chinensis HOM05D006992 ORTHO05D008752 4.6e-19 99.0 61 73.8
VMungo0331G0785 Vigna mungo HOM05D006992 ORTHO05D008752 5.7e-17 92.0 77 61.0
Gohir.D03G082200 Gossypium hirsutum HOM05D006992 ORTHO05D008752 4.1e-15 85.9 54 74.1
Sp3g03780 Schrenkiella parvula HOM05D000160 ORTHO05D000914 6.1e-11 72.0 36 91.7
Gorai.010G111000 Gossypium raimondii HOM05D001408 ORTHO05D001312 5.7e-09 65.5 40 70.0
Gohir.D06G096300 Gossypium hirsutum HOM05D001408 ORTHO05D001312 4.8e-08 62.4 40 65.0
Gorai.008G101100 Gossypium raimondii HOM05D006061 ORTHO05D007450 4.8e-08 62.4 39 69.2
RcHm_v2.0_Chr3g0452531 Rosa chinensis HOM05D006992 ORTHO05D008752 6.3e-08 62.0 35 82.9
SGA_v2.0_scaffold243G44307 Striga asiatica HOM05D060893 ORTHO05D008752 7.0e-07 58.5 143 37.1


User provided reference genes

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