Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr2.639 Acer truncatum HOM05D004384 ORTHO05D005797 0.0e+00 1673.3 860 100.0
Gohir.A13G171600 Gossypium hirsutum HOM05D004384 ORTHO05D005797 0.0e+00 1277.7 960 70.1
Thecc.05G292400 Theobroma cacao HOM05D004384 ORTHO05D005797 0.0e+00 1277.7 966 69.8
Duzib177G1205 Durio zibethinus HOM05D004384 ORTHO05D005797 0.0e+00 1267.3 966 69.7
Cfa006495 Carpinus fangiana HOM05D004384 ORTHO05D005797 0.0e+00 1247.6 964 69.6
Dinv04274 Davidia involucrata HOM05D004384 ORTHO05D005797 0.0e+00 1245.7 961 68.2
Potri.013G032100 Populus trichocarpa HOM05D004384 ORTHO05D005797 0.0e+00 1238.8 966 67.9
Manes.09G159100 Manihot esculenta HOM05D004384 ORTHO05D005797 0.0e+00 1236.5 959 67.7
COL.COLO4_13624 Corchorus olitorius HOM05D004384 ORTHO05D005797 0.0e+00 1233.4 882 72.9
Ciclev10000072m.g Citrus clementina HOM05D004384 ORTHO05D005797 0.0e+00 1231.5 963 68.7
Prupe.6G336100 Prunus persica HOM05D004384 ORTHO05D005797 0.0e+00 1230.7 962 68.3
Sabra13G0030800 Salix brachista HOM05D004384 ORTHO05D005797 0.0e+00 1230.3 966 67.3
GSVIVG01021908001 Vitis vinifera HOM05D004384 ORTHO05D005797 0.0e+00 1229.2 961 67.7
Nn3g21301 Nelumbo nucifera HOM05D004384 ORTHO05D005797 0.0e+00 1225.7 961 66.9
CiPaw.07G010400 Carya illinoinensis HOM05D004384 ORTHO05D005797 0.0e+00 1225.3 964 67.9
Gorai.013G122800 Gossypium raimondii HOM05D004384 ORTHO05D005797 0.0e+00 1221.1 965 66.9
QL03p001130 Quercus lobata HOM05D004384 ORTHO05D005797 0.0e+00 1216.1 964 67.6
Gohir.D13G109200 Gossypium hirsutum HOM05D004384 ORTHO05D005797 0.0e+00 1215.7 961 67.0
TWI56G1253 Tripterygium wilfordii HOM05D004384 ORTHO05D005797 0.0e+00 1213.4 959 66.8
Cpa.g.sc117.32 Carica papaya HOM05D004384 ORTHO05D005797 0.0e+00 1209.1 961 66.4
MD12G1232900 Malus domestica HOM05D004384 ORTHO05D005797 0.0e+00 1209.1 963 67.1
MD04G1216400 Malus domestica HOM05D004384 ORTHO05D005797 0.0e+00 1204.1 972 66.5
RcHm_v2.0_Chr3g0452661 Rosa chinensis HOM05D004384 ORTHO05D005797 0.0e+00 1198.0 970 65.7
Actinidia05750 Actinidia chinensis HOM05D004384 ORTHO05D005797 0.0e+00 1193.3 955 65.7
Gorai.013G202700 Gossypium raimondii HOM05D004384 ORTHO05D005797 0.0e+00 1189.5 966 66.4
TAR362G1140 Trochodendron aralioides HOM05D004384 ORTHO05D005797 0.0e+00 1188.7 912 67.8
CSS0010917 Camellia sinensis var. sinensis HOM05D004384 ORTHO05D005797 0.0e+00 1187.9 963 66.5
Rhsim10G0110700 Rhododendron simsii HOM05D004384 ORTHO05D005797 0.0e+00 1187.9 961 65.5
FAN14G1587 Fragaria x ananassa HOM05D004384 ORTHO05D005797 0.0e+00 1181.4 961 65.1
FvH4_6g04110 Fragaria vesca HOM05D004384 ORTHO05D005797 0.0e+00 1180.6 961 65.0
Lalb_Chr04g0261021 Lupinus albus HOM05D004384 ORTHO05D005797 0.0e+00 1176.0 956 65.2
FAN05G3638 Fragaria x ananassa HOM05D004384 ORTHO05D005797 0.0e+00 1175.6 961 64.7
FAN09G2428 Fragaria x ananassa HOM05D004384 ORTHO05D005797 0.0e+00 1174.1 961 64.6
Sc06g0003540 Simmondsia chinensis HOM05D004384 ORTHO05D005797 0.0e+00 1172.9 963 63.7
FAN09G2922 Fragaria x ananassa HOM05D004384 ORTHO05D005797 0.0e+00 1172.5 961 64.6
Glyma.03G243400 Glycine max HOM05D004384 ORTHO05D005797 0.0e+00 1172.5 978 63.9
FAN02G3203 Fragaria x ananassa HOM05D004384 ORTHO05D005797 0.0e+00 1167.9 961 64.4
Glyma.19G240700 Glycine max HOM05D004384 ORTHO05D005797 0.0e+00 1166.4 963 63.9
FAN05G1088 Fragaria x ananassa HOM05D004384 ORTHO05D005797 0.0e+00 1162.9 971 63.9
CANSAT54G2523 Cannabis sativa HOM05D004384 ORTHO05D005797 0.0e+00 1160.6 965 65.2
Lj1g0011638 Lotus japonicus HOM05D004384 ORTHO05D005797 0.0e+00 1159.8 960 64.4
THA.LOC104821698 Tarenaya hassleriana HOM05D004384 ORTHO05D005797 0.0e+00 1156.4 966 63.5
arahy.Tifrunner.gnm1.ann1.KAQB8D Arachis hypogaea HOM05D004384 ORTHO05D005797 0.0e+00 1155.2 963 64.2
Eucgr.H04418 Eucalyptus grandis HOM05D004384 ORTHO05D005797 0.0e+00 1154.8 963 63.9
arahy.Tifrunner.gnm1.ann1.RD3H93 Arachis hypogaea HOM05D004384 ORTHO05D005797 0.0e+00 1151.3 963 63.8
Cc02_g32190 Coffea canephora HOM05D004384 ORTHO05D005797 0.0e+00 1151.0 962 63.7
Solyc01g098170.3 Solanum lycopersicum HOM05D004384 ORTHO05D005797 0.0e+00 1149.4 960 63.5
Lj7A481G46 Lonicera japonica HOM05D004384 ORTHO05D005797 0.0e+00 1146.3 930 66.2
PGR004G0471 Punica granatum HOM05D004384 ORTHO05D005797 0.0e+00 1143.3 964 63.4
Nitab4.5_0000245g0070 Nicotiana tabacum HOM05D004384 ORTHO05D005797 0.0e+00 1142.1 960 63.0
Phvul.006G097400 Phaseolus vulgaris HOM05D004384 ORTHO05D005797 0.0e+00 1139.8 967 62.5
Psat3g008440 Pisum sativum HOM05D004384 ORTHO05D005797 0.0e+00 1138.6 956 64.2
VMungo0540G2235 Vigna mungo HOM05D004384 ORTHO05D005797 0.0e+00 1137.5 967 62.6
Gohir.D13G177400 Gossypium hirsutum HOM05D004384 ORTHO05D005797 0.0e+00 1133.6 970 64.0
DCAR_022275 Daucus carota HOM05D004384 ORTHO05D005797 0.0e+00 1132.1 962 61.7
Aa31LG11G8890 Aethionema arabicum HOM05D004384 ORTHO05D005797 0.0e+00 1128.6 961 61.7
C07p40520 Brassica napus HOM05D004384 ORTHO05D005797 0.0e+00 1125.2 965 61.9
BolC7t44588H Brassica oleracea HOM05D004384 ORTHO05D005797 0.0e+00 1124.0 965 61.8
CAN.G134.202 Capsicum annuum HOM05D004384 ORTHO05D005797 0.0e+00 1124.0 960 62.4
Hund07007 Selenicereus undatus HOM05D004384 ORTHO05D005797 0.0e+00 1123.2 963 60.7
TPR.G6955 Trifolium pratense HOM05D004384 ORTHO05D005797 0.0e+00 1123.2 964 63.5
EL10Ac4g09231 Beta vulgaris HOM05D004384 ORTHO05D005797 0.0e+00 1122.5 963 62.0
A06p37710 Brassica napus HOM05D004384 ORTHO05D005797 0.0e+00 1122.5 960 61.8
BraA06t26690Z Brassica rapa HOM05D004384 ORTHO05D005797 0.0e+00 1120.1 960 61.7
Thhalv10003536m.g Eutrema salsugineum HOM05D004384 ORTHO05D005797 0.0e+00 1119.8 963 61.5
Peaxi162Scf00225g00421 Petunia axillaris HOM05D004384 ORTHO05D005797 0.0e+00 1115.1 956 62.1
Ca_09392_v3 Cicer arietinum L. HOM05D004384 ORTHO05D005797 0.0e+00 1111.7 922 64.0
Aqoxy2G03095 Aquilegia oxysepala HOM05D004384 ORTHO05D005797 0.0e+00 1109.4 963 61.2
Sp2g20420 Schrenkiella parvula HOM05D004384 ORTHO05D005797 0.0e+00 1109.0 966 61.1
Carub.0006s2534 Capsella rubella HOM05D004384 ORTHO05D005797 0.0e+00 1108.6 960 61.2
CARHR185780 Cardamine hirsuta HOM05D004384 ORTHO05D005797 0.0e+00 1106.3 961 60.6
ClCG02G016280 Citrullus lanatus HOM05D004384 ORTHO05D005797 0.0e+00 1106.3 960 61.1
Medtr7g114260 Medicago truncatula HOM05D004384 ORTHO05D005797 0.0e+00 1102.4 965 61.8
CsaV3_2G004460 Cucumis sativus L. HOM05D004384 ORTHO05D005797 0.0e+00 1099.7 955 60.8
SalBow8G4829 Salvia bowleyana HOM05D004384 ORTHO05D005797 0.0e+00 1098.2 961 61.0
Migut.B01068 Erythranthe guttata HOM05D004384 ORTHO05D005797 0.0e+00 1087.0 964 59.9
AUR62005028 Chenopodium quinoa HOM05D004384 ORTHO05D005797 0.0e+00 1082.4 965 59.4
AL3G15430 Arabidopsis lyrata HOM05D004384 ORTHO05D005797 0.0e+00 1081.2 963 59.0
MELO3C004347.2 Cucumis melo HOM05D004384 ORTHO05D005797 0.0e+00 1076.2 955 60.1
SGA_v2.0_scaffold36G14404 Striga asiatica HOM05D004384 ORTHO05D005797 1.2e-311 1072.8 960 58.5
MSTRG.20437 Avicennia marina HOM05D004384 ORTHO05D005797 4.1e-311 1071.2 962 58.8
PSO170G1333 Papaver somniferum HOM05D004384 ORTHO05D005797 2.6e-310 1068.5 958 59.3
Thhalv10022131m.g Eutrema salsugineum HOM05D004384 ORTHO05D005797 1.3e-309 1066.2 963 58.4
Lsat_1_v5_gn_2_64920 Lactuca sativa HOM05D004384 ORTHO05D005797 6.4e-309 1063.9 961 59.2
AT3G05040 Arabidopsis thaliana HOM05D004384 ORTHO05D005797 1.1e-308 1063.1 963 58.5
Carub.0003s0429 Capsella rubella HOM05D004384 ORTHO05D005797 2.7e-307 1058.5 963 57.6
ECA238G0831 Erigeron canadensis HOM05D004384 ORTHO05D005797 6.0e-307 1057.4 964 58.2
HanXRQChr14g0446631 Helianthus annuus HOM05D004384 ORTHO05D005797 6.0e-307 1057.4 954 58.8
Nitab4.5_0010351g0010 Nicotiana tabacum HOM05D004384 ORTHO05D005797 2.1e-304 1048.9 960 59.8
Sed0012875 Sechium edule HOM05D004384 ORTHO05D005797 1.5e-302 1042.7 960 57.9
Ah.06g192860 Amaranthus hybridus HOM05D004384 ORTHO05D005797 1.8e-298 1029.2 963 57.3
BcaNung04267 Brassica carinata HOM05D004384 ORTHO05D005797 2.6e-294 1015.4 960 58.0
Oeu053262.1 Olea europaea HOM05D004384 ORTHO05D005797 1.2e-291 1006.5 1015 55.5
CDE01G0361 Ceratophyllum demersum HOM05D004384 ORTHO05D005797 6.0e-291 1004.2 960 56.1
AUR62000939 Chenopodium quinoa HOM05D004384 ORTHO05D005797 2.7e-283 978.8 895 58.1
CARHR079360 Cardamine hirsuta HOM05D004384 ORTHO05D005797 5.1e-282 974.5 892 58.4
vmacro05244 Vaccinium macrocarpon HOM05D004384 ORTHO05D005797 1.5e-270 936.4 1038 52.2
Zm00001eb341370 Zea mays HOM05D004384 ORTHO05D005797 2.0e-270 936.0 964 52.9
Sopen01g041740 Solanum pennellii HOM05D004384 ORTHO05D005797 6.5e-269 931.0 807 62.5
Os01g0363900 Oryza sativa ssp. japonica HOM05D004384 ORTHO05D005797 4.2e-268 928.3 958 52.1
ATR0618G249 Amborella trichopoda HOM05D004384 ORTHO05D005797 9.1e-263 910.6 935 52.5
Sp3g03870 Schrenkiella parvula HOM05D004384 ORTHO05D005797 6.1e-259 897.9 895 54.1
unitig_0.g2222 Utricularia gibba HOM05D004384 ORTHO05D005797 6.1e-251 871.3 965 50.6
Aqoxy179s001 Aquilegia oxysepala HOM05D004384 ORTHO05D005797 2.5e-212 743.0 807 52.4
Sopen00g006580 Solanum pennellii HOM05D004384 ORTHO05D005797 4.2e-191 672.5 635 58.6
Mapoly0015s0189 Marchantia polymorpha HOM05D004384 ORTHO05D005797 8.7e-181 638.3 993 39.4
Medtr1g063040 Medicago truncatula HOM05D004384 ORTHO05D005797 1.1e-178 631.3 855 47.6
Pp3c7_3740 Physcomitrium patens HOM05D004384 ORTHO05D005797 4.9e-176 622.5 976 38.3
Pp3c11_26800 Physcomitrium patens HOM05D004384 ORTHO05D005797 2.5e-175 620.2 981 37.3
Haze_04294 Corylus avellana HOM05D004384 ORTHO05D005797 1.0e-173 614.8 590 58.5
SEGI_22518 Sequoiadendron giganteum HOM05D004384 ORTHO05D005797 5.9e-169 599.0 794 43.7
BolC1t05723H Brassica oleracea HOM05D004384 ORTHO05D005797 2.7e-166 590.1 967 39.6
Haze_04301 Corylus avellana HOM05D004384 ORTHO05D005797 2.3e-165 587.0 494 66.0
Actinidia30910 Actinidia chinensis HOM05D004384 ORTHO05D005797 3.1e-162 576.6 451 67.8
BNapus_Darmor_BZH_scaffold_78p01040 Brassica napus HOM05D004384 ORTHO05D005797 5.5e-159 565.8 936 39.0
BraA01t04501Z Brassica rapa HOM05D004384 ORTHO05D005797 1.8e-157 560.8 936 38.7
SMO145G0253 Selaginella moellendorffii HOM05D004384 ORTHO05D005797 3.9e-157 559.7 911 36.7
BcaB04g21343 Brassica carinata HOM05D004384 ORTHO05D005797 2.2e-155 553.9 947 37.8
HPP92_011287 Vanilla planifolia HOM05D004384 ORTHO05D005797 3.7e-147 526.6 502 55.0
AagrBONN_evm.TU.Sc2ySwM_340.422 Anthoceros agrestis HOM05D004384 ORTHO05D005797 7.0e-146 522.3 968 34.7
HPP92_011309 Vanilla planifolia HOM05D004384 ORTHO05D005797 9.5e-119 432.2 421 54.4
HPP92_011308 Vanilla planifolia HOM05D004384 ORTHO05D005797 1.5e-111 408.3 325 64.6
BcaC05g29989 Brassica carinata HOM05D004384 ORTHO05D005797 6.6e-96 356.3 900 32.6
HPP92_011286 Vanilla planifolia HOM05D004384 ORTHO05D005797 1.5e-95 355.1 294 61.6
Gohir.A13G106433 Gossypium hirsutum HOM05D004384 ORTHO05D005797 7.8e-81 306.2 197 74.6
Glyma.02G183700 Glycine max HOM05D004384 ORTHO05D005797 2.5e-79 301.2 210 71.4
arahy.Tifrunner.gnm1.ann1.2MX35J Arachis hypogaea HOM05D000319 ORTHO05D002646 6.0e-65 253.4 217 64.1
CSS0044605 Camellia sinensis var. sinensis HOM05D004384 ORTHO05D005797 7.7e-44 183.3 109 83.5
Os11g0518900 Oryza sativa ssp. japonica HOM05D004384 ORTHO05D005797 9.7e-39 166.4 305 32.8
MCO07G327 Micromonas commoda HOM05D004384 ORTHO05D005797 1.0e-35 156.4 246 34.6
Os11g0513900 Oryza sativa ssp. japonica HOM05D004384 ORTHO05D005797 3.6e-33 147.9 314 29.9
PGSC0003DMG400022491 Solanum tuberosum HOM05D004384 ORTHO05D005797 5.0e-27 127.5 75 74.7
SEGI_23591 Sequoiadendron giganteum HOM05D004384 ORTHO05D005797 2.7e-25 121.7 108 52.8
Os11g0517800 Oryza sativa ssp. japonica HOM05D004384 ORTHO05D299849 3.5e-20 104.8 341 26.4
MBI18_g14725_MAGBIO Magnolia biondii HOM05D004384 ORTHO05D005797 1.3e-19 102.8 86 64.0
Lsat_1_v5_gn_5_147500 Lactuca sativa HOM05D001610 ORTHO05D005797 4.0e-16 91.3 73 58.9
Sopen00g006590 Solanum pennellii HOM05D004384 ORTHO05D005797 4.0e-16 91.3 51 76.5
Sopen01g041750 Solanum pennellii HOM05D004384 ORTHO05D005797 4.0e-16 91.3 51 76.5
CAN.G124.14 Capsicum annuum HOM05D004384 ORTHO05D022156 1.2e-12 79.7 50 80.0
CAN.G37.9 Capsicum annuum HOM05D001673 ORTHO05D013418 1.2e-12 79.7 50 80.0
HPP92_011310 Vanilla planifolia HOM05D004384 ORTHO05D005797 6.6e-11 73.9 71 57.7
Cre10.g420250 Chlamydomonas reinhardtii HOM05D004384 ORTHO05D005797 1.6e-09 69.3 185 28.6
FvH4_6g04501 Fragaria vesca HOM05D004384 ORTHO05D005797 1.6e-09 69.3 37 86.5
Lsat_1_v5_gn_5_15721 Lactuca sativa HOM05D001610 ORTHO05D001585 9.8e-07 60.1 46 54.3


User provided reference genes

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