Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr2.511 Acer truncatum HOM05D000003 ORTHO05D000167 1.6e-91 339.3 161 100.0
Atru.chr8.816 Acer truncatum HOM05D000003 ORTHO05D000004 1.9e-25 119.8 160 37.5
CANSAT35G0293 Cannabis sativa HOM05D000003 ORTHO05D000004 1.4e-18 97.1 162 32.7
QL04p056296 Quercus lobata HOM05D000003 ORTHO05D000004 3.1e-15 85.9 160 32.5
Atru.chr8.1381 Acer truncatum HOM05D000003 ORTHO05D000004 1.2e-14 84.0 160 30.6
CANSAT21G0988 Cannabis sativa HOM05D000003 ORTHO05D000004 1.2e-14 84.0 165 29.1
Atru.chr7.410 Acer truncatum HOM05D000003 ORTHO05D000004 2.6e-14 82.8 159 30.8
CANSAT64G1154 Cannabis sativa HOM05D000003 ORTHO05D000004 4.5e-14 82.0 173 28.3
Atru.chr6.710 Acer truncatum HOM05D000003 ORTHO05D000004 7.7e-14 81.3 94 40.4
EL10Ac9g23004 Beta vulgaris HOM05D000003 ORTHO05D000004 7.7e-14 81.3 153 29.4
Sed0017730 Sechium edule HOM05D000003 ORTHO05D000004 1.3e-13 80.5 165 32.1
QL01p035119 Quercus lobata HOM05D000003 ORTHO05D000167 2.9e-13 79.3 163 29.4
Atru.chr7.1911 Acer truncatum HOM05D000003 ORTHO05D000004 3.8e-13 79.0 161 29.2
Sed0010093 Sechium edule HOM05D000003 ORTHO05D000004 5.0e-13 78.6 165 31.5
Atru.chr12.350 Acer truncatum HOM05D000003 ORTHO05D000167 6.5e-13 78.2 153 26.8
CANSAT11G0021 Cannabis sativa HOM05D000003 ORTHO05D000167 6.5e-13 78.2 163 30.7
QL93p0205_0033 Quercus lobata HOM05D000003 ORTHO05D000004 8.5e-13 77.8 163 27.6
CANSAT25G0727 Cannabis sativa HOM05D000003 ORTHO05D000004 1.4e-12 77.0 160 28.1
QL03p039168 Quercus lobata HOM05D000003 ORTHO05D000167 1.4e-12 77.0 165 27.9
CANSAT78G0786 Cannabis sativa HOM05D000003 ORTHO05D000004 2.5e-12 76.3 171 26.3
Atru.chr13.2526 Acer truncatum HOM05D000003 ORTHO05D000167 4.2e-12 75.5 159 27.0
Atru.chr2.2868 Acer truncatum HOM05D000003 ORTHO05D000004 5.5e-12 75.1 160 29.4
Atru.chr2.49 Acer truncatum HOM05D000003 ORTHO05D000167 5.5e-12 75.1 150 30.0
CANSAT64G1068 Cannabis sativa HOM05D000003 ORTHO05D000167 5.5e-12 75.1 84 41.7
Atru.chr1.763 Acer truncatum HOM05D000003 ORTHO05D000004 7.2e-12 74.7 160 31.2
CANSAT56G3286 Cannabis sativa HOM05D000003 ORTHO05D000004 7.2e-12 74.7 162 26.5
CiPaw.03G190200 Carya illinoinensis HOM05D000003 ORTHO05D000167 1.2e-11 73.9 159 26.4
EL10Ac6g13992 Beta vulgaris HOM05D000003 ORTHO05D000004 1.6e-11 73.6 158 27.8
AUR62034035 Chenopodium quinoa HOM05D000003 ORTHO05D000006 1.6e-11 73.6 161 27.3
Atru.chr1.2485 Acer truncatum HOM05D000003 ORTHO05D000004 2.1e-11 73.2 157 26.8
CANSAT01G2388 Cannabis sativa HOM05D000003 ORTHO05D000004 2.7e-11 72.8 170 28.2
CANSAT54G2929 Cannabis sativa HOM05D000003 ORTHO05D000004 2.7e-11 72.8 172 25.6
Atru.chr9.146 Acer truncatum HOM05D000003 ORTHO05D000167 3.6e-11 72.4 139 30.2
CiPaw.09G152300 Carya illinoinensis HOM05D000003 ORTHO05D000167 3.6e-11 72.4 162 28.4
CiPaw.14G039600 Carya illinoinensis HOM05D000003 ORTHO05D000004 3.6e-11 72.4 162 24.7
Atru.chr2.2490 Acer truncatum HOM05D000003 ORTHO05D000004 4.7e-11 72.0 161 26.7
QL05p042365 Quercus lobata HOM05D000003 ORTHO05D000167 4.7e-11 72.0 162 25.3
QL05p065428 Quercus lobata HOM05D000003 ORTHO05D000004 4.7e-11 72.0 158 25.3
RcHm_v2.0_Chr7g0187741 Rosa chinensis HOM05D008097 ORTHO05D010102 6.1e-11 71.6 164 26.2
Atru.chr10.1454 Acer truncatum HOM05D000003 ORTHO05D000167 8.0e-11 71.2 161 27.3
Atru.chr7.1503 Acer truncatum HOM05D000003 ORTHO05D000006 8.0e-11 71.2 163 29.4
CANSAT64G0231 Cannabis sativa HOM05D000003 ORTHO05D000167 8.0e-11 71.2 139 29.5
QL07p038559 Quercus lobata HOM05D000003 ORTHO05D000167 8.0e-11 71.2 161 27.3
Atru.chr11.167 Acer truncatum HOM05D000003 ORTHO05D000006 1.0e-10 70.9 161 28.0
Atru.chr4.1214 Acer truncatum HOM05D000003 ORTHO05D000167 1.4e-10 70.5 159 24.5
CiPaw.08G120100 Carya illinoinensis HOM05D000003 ORTHO05D000004 1.4e-10 70.5 167 25.7
Atru.chr5.1665 Acer truncatum HOM05D000003 ORTHO05D000167 1.8e-10 70.1 148 26.4
QL93p0138_0008 Quercus lobata HOM05D000003 ORTHO05D000167 1.8e-10 70.1 161 28.0
Atru.chr10.298 Acer truncatum HOM05D000003 ORTHO05D000004 3.0e-10 69.3 161 27.3
Atru.chr11.1020 Acer truncatum HOM05D000003 ORTHO05D000167 3.0e-10 69.3 138 33.3
Atru.chr3.1273 Acer truncatum HOM05D000003 ORTHO05D000167 3.9e-10 68.9 163 29.4
Atru.ctg24.6 Acer truncatum HOM05D000003 ORTHO05D000004 3.9e-10 68.9 163 26.4
AUR62006131 Chenopodium quinoa HOM05D000003 ORTHO05D000126 5.2e-10 68.6 159 23.9
AUR62035911 Chenopodium quinoa HOM05D000003 ORTHO05D000004 5.2e-10 68.6 160 28.8
Atru.chr8.822 Acer truncatum HOM05D000003 ORTHO05D000167 1.1e-09 67.4 160 27.5
Atru.chr2.108 Acer truncatum HOM05D000003 ORTHO05D000004 1.5e-09 67.0 148 29.1
CANSAT11G0139 Cannabis sativa HOM05D000003 ORTHO05D000167 1.5e-09 67.0 142 26.1
CiPaw.09G167800 Carya illinoinensis HOM05D000003 ORTHO05D000004 1.5e-09 67.0 163 27.6
Atru.chr3.1850 Acer truncatum HOM05D000003 ORTHO05D000004 2.0e-09 66.6 161 26.7
Atru.chr7.662 Acer truncatum HOM05D000003 ORTHO05D000167 2.0e-09 66.6 138 26.1
Atru.chr8.782 Acer truncatum HOM05D000003 ORTHO05D000004 2.0e-09 66.6 161 25.5
Atru.chr1.2596 Acer truncatum HOM05D000003 ORTHO05D000004 2.6e-09 66.2 150 30.0
Atru.chr3.2934 Acer truncatum HOM05D000003 ORTHO05D000006 2.6e-09 66.2 161 26.1
CANSAT21G2305 Cannabis sativa HOM05D000003 ORTHO05D000004 2.6e-09 66.2 150 26.0
TAR199G0001 Trochodendron aralioides HOM05D000003 ORTHO05D000004 2.6e-09 66.2 161 27.3
Atru.chr13.2597 Acer truncatum HOM05D000003 ORTHO05D000004 3.3e-09 65.9 159 27.0
Atru.chr8.1143 Acer truncatum HOM05D000003 ORTHO05D000004 4.4e-09 65.5 163 29.4
Atru.chr9.494 Acer truncatum HOM05D000003 ORTHO05D000006 4.4e-09 65.5 159 23.9
CANSAT25G2032 Cannabis sativa HOM05D000003 ORTHO05D000004 4.4e-09 65.5 161 28.0
QL03p033496 Quercus lobata HOM05D000003 ORTHO05D000004 4.4e-09 65.5 159 28.9
Atru.chr9.643 Acer truncatum HOM05D000003 ORTHO05D000167 5.7e-09 65.1 154 27.9
CANSAT25G2443 Cannabis sativa HOM05D000003 ORTHO05D000004 5.7e-09 65.1 171 26.9
CANSAT64G2222 Cannabis sativa HOM05D000003 ORTHO05D000004 5.7e-09 65.1 167 24.0
CANSAT78G0319 Cannabis sativa HOM05D000003 ORTHO05D000167 5.7e-09 65.1 159 23.9
CiPaw.08G150600 Carya illinoinensis HOM05D000003 ORTHO05D000004 5.7e-09 65.1 161 24.8
AUR62018461 Chenopodium quinoa HOM05D000003 ORTHO05D000004 5.7e-09 65.1 161 26.1
QL05p043982 Quercus lobata HOM05D000003 ORTHO05D000004 5.7e-09 65.1 158 29.7
Atru.chr1.2712 Acer truncatum HOM05D000003 ORTHO05D000167 7.4e-09 64.7 163 24.5
Atru.chr8.183 Acer truncatum HOM05D000003 ORTHO05D000167 7.4e-09 64.7 148 27.0
Atru.chr8.265 Acer truncatum HOM05D000003 ORTHO05D000167 7.4e-09 64.7 148 27.0
FvH4_4g15487 Fragaria vesca HOM05D000003 ORTHO05D000004 7.4e-09 64.7 162 24.1
CiPaw.05G213600 Carya illinoinensis HOM05D000003 ORTHO05D000004 9.7e-09 64.3 166 26.5
Atru.chr2.176 Acer truncatum HOM05D000003 ORTHO05D000167 1.3e-08 63.9 93 34.4
Atru.chr2.1340 Acer truncatum HOM05D000003 ORTHO05D000167 1.7e-08 63.5 160 25.6
Atru.chr2.2733 Acer truncatum HOM05D000003 ORTHO05D000167 1.7e-08 63.5 150 26.7
CANSAT01G0507 Cannabis sativa HOM05D000003 ORTHO05D000167 1.7e-08 63.5 159 26.4
Atru.chr12.2124 Acer truncatum HOM05D000003 ORTHO05D000167 2.2e-08 63.2 158 27.2
Atru.chr5.1598 Acer truncatum HOM05D000856 ORTHO05D000167 2.2e-08 63.2 157 28.0
Atru.chr5.2695 Acer truncatum HOM05D000003 ORTHO05D000167 2.8e-08 62.8 135 31.9
QL05p012339 Quercus lobata HOM05D000003 ORTHO05D000167 2.8e-08 62.8 157 26.8
Atru.chr9.954 Acer truncatum HOM05D000003 ORTHO05D000167 3.7e-08 62.4 150 26.0
CANSAT35G1604 Cannabis sativa HOM05D000003 ORTHO05D000004 3.7e-08 62.4 175 27.4
CiPaw.01G080900 Carya illinoinensis HOM05D000003 ORTHO05D000004 3.7e-08 62.4 143 28.7
AUR62038357 Chenopodium quinoa HOM05D000003 ORTHO05D000004 3.7e-08 62.4 159 25.2
Lj2g0001240 Lotus japonicus HOM05D000003 ORTHO05D000167 3.7e-08 62.4 157 26.1
Atru.chr10.535 Acer truncatum HOM05D000003 ORTHO05D000004 4.8e-08 62.0 163 28.8
CANSAT56G1970 Cannabis sativa HOM05D000003 ORTHO05D000167 4.8e-08 62.0 91 33.0
QL04p043426 Quercus lobata HOM05D000003 ORTHO05D050636 4.8e-08 62.0 150 26.7
TWI14G0340 Tripterygium wilfordii HOM05D000003 ORTHO05D000004 4.8e-08 62.0 170 24.7
CSS0031820 Camellia sinensis var. sinensis HOM05D000698 ORTHO05D000004 6.3e-08 61.6 163 27.0
Lj4g0023123 Lotus japonicus HOM05D000003 ORTHO05D000004 6.3e-08 61.6 162 26.5
QL07p017810 Quercus lobata HOM05D000003 ORTHO05D000004 6.3e-08 61.6 163 25.2
TWI32G0681 Tripterygium wilfordii HOM05D000003 ORTHO05D000004 6.3e-08 61.6 170 24.7
Atru.chr7.130 Acer truncatum HOM05D000003 ORTHO05D000126 8.2e-08 61.2 149 26.8
Atru.chr1.3159 Acer truncatum HOM05D000003 ORTHO05D000167 1.1e-07 60.8 159 27.0
TWI53G0004 Tripterygium wilfordii HOM05D000003 ORTHO05D000004 1.1e-07 60.8 170 24.7
Atru.chr11.1731 Acer truncatum HOM05D000003 ORTHO05D000167 1.4e-07 60.5 165 27.9
Atru.chr11.235 Acer truncatum HOM05D000003 ORTHO05D000167 1.4e-07 60.5 156 26.9
CANSAT78G0730 Cannabis sativa HOM05D000003 ORTHO05D000004 1.4e-07 60.5 157 23.6
CANSAT78G2502 Cannabis sativa HOM05D000003 ORTHO05D000167 1.4e-07 60.5 149 25.5
QL01p037342 Quercus lobata HOM05D000003 ORTHO05D011877 1.4e-07 60.5 93 32.3
QL03p062140 Quercus lobata HOM05D000005 ORTHO05D050636 1.4e-07 60.5 94 34.0
TWI31G1374 Tripterygium wilfordii HOM05D000003 ORTHO05D000004 1.4e-07 60.5 170 24.7
Atru.chr5.1802 Acer truncatum HOM05D000003 ORTHO05D000004 1.8e-07 60.1 163 22.7
Rhsim01G0165600 Rhododendron simsii HOM05D000003 ORTHO05D007254 1.8e-07 60.1 173 26.6
RcHm_v2.0_Chr6g0249781 Rosa chinensis HOM05D000003 ORTHO05D000004 1.8e-07 60.1 170 22.4
Atru.chr4.3086 Acer truncatum HOM05D000003 ORTHO05D000167 2.4e-07 59.7 135 26.7
Atru.chr8.965 Acer truncatum HOM05D000003 ORTHO05D000167 2.4e-07 59.7 104 29.8
Atru.chr2.2201 Acer truncatum HOM05D000003 ORTHO05D000004 3.1e-07 59.3 162 26.5
CANSAT54G1759 Cannabis sativa HOM05D000003 ORTHO05D000167 3.1e-07 59.3 153 25.5
FAN14G0257 Fragaria x ananassa HOM05D000003 ORTHO05D006737 3.1e-07 59.3 149 22.8
Ah.06g188390 Amaranthus hybridus HOM05D000003 ORTHO05D000004 4.1e-07 58.9 156 25.0
Sed0017531 Sechium edule HOM05D000003 ORTHO05D000126 4.1e-07 58.9 170 26.5
CiPaw.07G069100 Carya illinoinensis HOM05D000003 ORTHO05D000167 5.3e-07 58.5 140 21.4
AUR62022476 Chenopodium quinoa HOM05D000003 ORTHO05D000006 5.3e-07 58.5 162 24.1
Atru.chr11.887 Acer truncatum HOM05D000003 ORTHO05D000167 7.0e-07 58.2 151 27.2
CANSAT80G2262 Cannabis sativa HOM05D000003 ORTHO05D000167 7.0e-07 58.2 134 23.1
QL05p057131 Quercus lobata HOM05D000003 ORTHO05D000167 7.0e-07 58.2 136 29.4
TWI56G1451 Tripterygium wilfordii HOM05D000003 ORTHO05D000167 7.0e-07 58.2 165 27.3
Atru.chr6.486 Acer truncatum HOM05D000003 ORTHO05D000167 9.1e-07 57.8 158 24.1
Atru.chr8.1426 Acer truncatum HOM05D000003 ORTHO05D000004 9.1e-07 57.8 137 24.1
Ah.10g028600 Amaranthus hybridus HOM05D021079 ORTHO05D000167 9.1e-07 57.8 162 28.4
Ah.10g028840 Amaranthus hybridus HOM05D021079 ORTHO05D000167 9.1e-07 57.8 162 28.4
CANSAT21G2622 Cannabis sativa HOM05D000003 ORTHO05D000004 9.1e-07 57.8 173 23.1
QL07p025038 Quercus lobata HOM05D000003 ORTHO05D000167 1.2e-06 57.4 106 32.1
Atru.chr1.2556 Acer truncatum HOM05D000003 ORTHO05D000004 1.6e-06 57.0 140 25.0
Aa31LG2G18410 Aethionema arabicum HOM05D000003 ORTHO05D000004 1.6e-06 57.0 167 22.2
Atru.chr10.544 Acer truncatum HOM05D000003 ORTHO05D000004 2.0e-06 56.6 163 28.2
Atru.chr10.8 Acer truncatum HOM05D000003 ORTHO05D000167 2.0e-06 56.6 151 23.8
Atru.chr4.686 Acer truncatum HOM05D000003 ORTHO05D000126 2.0e-06 56.6 93 30.1
CANSAT35G0312 Cannabis sativa HOM05D000003 ORTHO05D000167 2.0e-06 56.6 158 25.9
CANSAT56G3747 Cannabis sativa HOM05D000003 ORTHO05D000167 2.0e-06 56.6 154 26.0
AUR62014818 Chenopodium quinoa HOM05D000003 ORTHO05D000004 2.0e-06 56.6 148 28.4
PSO541G1607 Papaver somniferum HOM05D000003 ORTHO05D001026 2.0e-06 56.6 156 21.8
CANSAT54G2709 Cannabis sativa HOM05D000003 ORTHO05D000004 2.6e-06 56.2 160 21.9
Atru.chr13.2074 Acer truncatum HOM05D000003 ORTHO05D000167 3.5e-06 55.8 170 28.2
CANSAT21G2477 Cannabis sativa HOM05D000003 ORTHO05D000004 3.5e-06 55.8 188 22.9
FvH4_2g13111 Fragaria vesca HOM05D000003 ORTHO05D011274 3.5e-06 55.8 103 32.0
QL05p004966 Quercus lobata HOM05D000003 ORTHO05D011877 3.5e-06 55.8 92 29.3
QL07p015088 Quercus lobata HOM05D000003 ORTHO05D000167 3.5e-06 55.8 99 30.3
Atru.chr8.1648 Acer truncatum HOM05D000003 ORTHO05D000167 4.5e-06 55.5 112 28.6
EL10Ac4g08380 Beta vulgaris HOM05D000003 ORTHO05D000004 4.5e-06 55.5 149 24.2
FAN24G1917 Fragaria x ananassa HOM05D000011 ORTHO05D000157 4.5e-06 55.5 137 27.7
CANSAT80G2861 Cannabis sativa HOM05D000003 ORTHO05D000004 5.9e-06 55.1 167 25.1
Haze_08252 Corylus avellana HOM05D009546 ORTHO05D014580 5.9e-06 55.1 141 28.4
Atru.chr10.362 Acer truncatum HOM05D000003 ORTHO05D000167 7.7e-06 54.7 149 24.2
CiPaw.16G076300 Carya illinoinensis HOM05D000003 ORTHO05D000004 7.7e-06 54.7 90 28.9
Sed0006726 Sechium edule HOM05D000003 ORTHO05D000167 7.7e-06 54.7 169 27.2


User provided reference genes

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