Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr2.488 Acer truncatum HOM05D001286 ORTHO05D000440 4.6e-143 511.1 244 100.0
Atru.chr2.489 Acer truncatum HOM05D001286 ORTHO05D006029 1.8e-30 137.1 199 42.7
Atru.chr2.481 Acer truncatum HOM05D001286 ORTHO05D000440 5.8e-29 132.1 186 42.5
Atru.chr2.342 Acer truncatum HOM05D001286 ORTHO05D000440 8.6e-25 118.2 185 41.6
Atru.chr13.1445 Acer truncatum HOM05D001286 ORTHO05D000440 2.8e-23 113.2 166 41.0
Atru.chr13.1469 Acer truncatum HOM05D001286 ORTHO05D000440 2.8e-23 113.2 166 41.0
Atru.chr5.110 Acer truncatum HOM05D001286 ORTHO05D000440 1.5e-21 107.5 192 38.0
Atru.chr2.486 Acer truncatum HOM05D001286 ORTHO05D000440 9.2e-19 98.2 106 49.1
COL.COLO4_20081 Corchorus olitorius HOM05D001286 ORTHO05D000440 5.1e-17 92.4 178 33.7
Atru.chr2.1235 Acer truncatum HOM05D001286 ORTHO05D000440 8.1e-15 85.1 117 42.7
COL.COLO4_23032 Corchorus olitorius HOM05D001286 ORTHO05D000440 8.1e-15 85.1 180 35.0
TPR.G23337 Trifolium pratense HOM05D001286 ORTHO05D000440 1.1e-14 84.7 170 28.2
COL.COLO4_15077 Corchorus olitorius HOM05D010078 ORTHO05D000440 4.0e-14 82.8 178 30.3
Atru.chr11.1582 Acer truncatum HOM05D000108 ORTHO05D006029 6.8e-14 82.0 38 97.4
Atru.chr2.424 Acer truncatum HOM05D001286 ORTHO05D000440 8.9e-14 81.6 192 30.2
Ciclev10000365m.g Citrus clementina HOM05D000273 ORTHO05D000198 1.3e-12 77.8 38 86.8
QL02p058170 Quercus lobata HOM05D001286 ORTHO05D000440 1.3e-12 77.8 178 30.3
QL93p0100_0562 Quercus lobata HOM05D001286 ORTHO05D000440 1.3e-12 77.8 178 30.9
Duzib106G0631 Durio zibethinus HOM05D001286 ORTHO05D000440 2.2e-12 77.0 190 30.0
Cfa007811 Carpinus fangiana HOM05D001286 ORTHO05D000440 2.9e-12 76.6 177 28.2
Haze_14264 Corylus avellana HOM05D001286 ORTHO05D000440 2.9e-12 76.6 177 28.2
TAR369G0060 Trochodendron aralioides HOM05D001286 ORTHO05D000440 4.9e-12 75.9 196 29.1
COL.COLO4_29718 Corchorus olitorius HOM05D001286 ORTHO05D000440 1.1e-11 74.7 198 26.8
TAR376G0134 Trochodendron aralioides HOM05D001286 ORTHO05D000440 1.1e-11 74.7 173 31.2
Cpa.g.sc48.12 Carica papaya HOM05D000108 ORTHO05D006029 1.4e-11 74.3 38 81.6
COL.COLO4_15066 Corchorus olitorius HOM05D010078 ORTHO05D000440 1.4e-11 74.3 170 30.6
COL.COLO4_35245 Corchorus olitorius HOM05D001286 ORTHO05D000440 1.4e-11 74.3 177 33.9
Duzib093G1514 Durio zibethinus HOM05D001286 ORTHO05D000440 1.9e-11 73.9 198 27.3
Nn1g05876 Nelumbo nucifera HOM05D001286 ORTHO05D000440 1.9e-11 73.9 167 34.1
COL.COLO4_25693 Corchorus olitorius HOM05D010078 ORTHO05D000440 2.4e-11 73.6 202 30.7
Gorai.009G401400 Gossypium raimondii HOM05D001286 ORTHO05D000440 3.2e-11 73.2 199 27.6
Thecc.05G090300 Theobroma cacao HOM05D001286 ORTHO05D000440 3.2e-11 73.2 198 27.3
Atru.chr2.465 Acer truncatum HOM05D001286 ORTHO05D000440 4.1e-11 72.8 190 27.9
COL.COLO4_20080 Corchorus olitorius HOM05D000039 ORTHO05D000370 4.1e-11 72.8 182 27.5
COL.COLO4_03623 Corchorus olitorius HOM05D010078 ORTHO05D000440 7.1e-11 72.0 170 30.6
Thhalv10002259m.g Eutrema salsugineum HOM05D001286 ORTHO05D000440 7.1e-11 72.0 171 29.2
Medtr7g104790 Medicago truncatula HOM05D001286 ORTHO05D000440 7.1e-11 72.0 190 26.8
Ciclev10003369m.g Citrus clementina HOM05D001286 ORTHO05D000440 9.2e-11 71.6 170 28.2
AL2G18850 Arabidopsis lyrata HOM05D001286 ORTHO05D000440 1.2e-10 71.2 172 28.5
COL.COLO4_15070 Corchorus olitorius HOM05D010078 ORTHO05D000440 1.2e-10 71.2 184 29.3
DCAR_020742 Daucus carota HOM05D001286 ORTHO05D000440 1.2e-10 71.2 204 26.0
FvH4_2g26662 Fragaria vesca HOM05D014387 ORTHO05D015131 1.2e-10 71.2 185 30.8
Gohir.D04G099000 Gossypium hirsutum HOM05D001286 ORTHO05D000440 1.2e-10 71.2 174 28.7
CSS0048691 Camellia sinensis var. sinensis HOM05D001286 ORTHO05D000440 1.6e-10 70.9 172 30.2
COL.COLO4_17685 Corchorus olitorius HOM05D001286 ORTHO05D000440 2.1e-10 70.5 205 29.3
FvH4_2g14800 Fragaria vesca HOM05D000001 ORTHO05D010004 2.1e-10 70.5 194 28.4
Psat3g032400 Pisum sativum HOM05D001286 ORTHO05D000440 2.1e-10 70.5 171 26.3
QL03p004313 Quercus lobata HOM05D000108 ORTHO05D006029 2.1e-10 70.5 46 67.4
Sp5g06085 Schrenkiella parvula HOM05D001286 ORTHO05D000440 2.1e-10 70.5 157 28.0
TAR369G0559 Trochodendron aralioides HOM05D001286 ORTHO05D000440 2.1e-10 70.5 183 27.9
TAR369G0746 Trochodendron aralioides HOM05D001286 ORTHO05D000440 2.1e-10 70.5 183 27.9
Actinidia05421 Actinidia chinensis HOM05D001286 ORTHO05D000440 2.7e-10 70.1 175 29.1
Aa31csc81G80 Aethionema arabicum HOM05D001286 ORTHO05D000440 4.6e-10 69.3 161 29.2
Duzib106G1385 Durio zibethinus HOM05D001286 ORTHO05D000440 4.6e-10 69.3 172 29.1
TAR376G0082 Trochodendron aralioides HOM05D001286 ORTHO05D000440 4.6e-10 69.3 170 30.6
TAR376G1185 Trochodendron aralioides HOM05D001286 ORTHO05D000440 4.6e-10 69.3 170 30.6
Aqoxy3G03811 Aquilegia oxysepala HOM05D001286 ORTHO05D000440 6.0e-10 68.9 188 28.2
CiPaw.03G072100 Carya illinoinensis HOM05D001286 ORTHO05D000440 6.0e-10 68.9 189 29.6
Thhalv10028173m.g Eutrema salsugineum HOM05D001286 ORTHO05D000440 6.0e-10 68.9 163 29.4
Lj9A682T48 Lonicera japonica HOM05D000108 ORTHO05D006029 6.0e-10 68.9 38 71.1
ClCG03G010060 Citrullus lanatus HOM05D000108 ORTHO05D006029 7.8e-10 68.6 45 62.2
Duzib248G0416 Durio zibethinus HOM05D001286 ORTHO05D000440 7.8e-10 68.6 187 29.9
Gohir.D01G195200 Gossypium hirsutum HOM05D001286 ORTHO05D000440 7.8e-10 68.6 180 26.1
Gorai.002G239400 Gossypium raimondii HOM05D001286 ORTHO05D000440 7.8e-10 68.6 180 26.1
MELO3C010147.2 Cucumis melo HOM05D000108 ORTHO05D006029 1.0e-09 68.2 45 62.2
Haze_25394 Corylus avellana HOM05D000108 ORTHO05D006029 1.3e-09 67.8 38 76.3
Sabra06G0163600 Salix brachista HOM05D001286 ORTHO05D000440 1.3e-09 67.8 176 27.8
THA.LOC104823031 Tarenaya hassleriana HOM05D000108 ORTHO05D006029 1.3e-09 67.8 70 51.4
Gohir.A01G205800 Gossypium hirsutum HOM05D001286 ORTHO05D000440 1.7e-09 67.4 180 26.1
Manes.08G123200 Manihot esculenta HOM05D000108 ORTHO05D006029 1.7e-09 67.4 46 58.7
Potri.006G212600 Populus trichocarpa HOM05D001286 ORTHO05D000440 1.7e-09 67.4 176 27.8
CANSAT64G2057 Cannabis sativa HOM05D001286 ORTHO05D000440 2.3e-09 67.0 197 24.9
CsaV3_1G045180 Cucumis sativus L. HOM05D000108 ORTHO05D006029 2.3e-09 67.0 45 60.0
TWI56G0698 Tripterygium wilfordii HOM05D000108 ORTHO05D006029 2.3e-09 67.0 46 60.9
Aa31LG10G17350 Aethionema arabicum HOM05D000108 ORTHO05D006029 3.9e-09 66.2 70 50.0
Carub.0006s3152 Capsella rubella HOM05D001286 ORTHO05D000440 3.9e-09 66.2 176 27.3
Cfa006545 Carpinus fangiana HOM05D000108 ORTHO05D006029 3.9e-09 66.2 38 73.7
Cfa007810 Carpinus fangiana HOM05D001286 ORTHO05D000440 3.9e-09 66.2 178 27.5
Cc02_g32690 Coffea canephora HOM05D000108 ORTHO05D006029 3.9e-09 66.2 69 44.9
Atru.chr8.1486 Acer truncatum HOM05D001286 ORTHO05D000440 5.1e-09 65.9 174 25.3
CSS0038768 Camellia sinensis var. sinensis HOM05D000108 ORTHO05D006029 5.1e-09 65.9 44 63.6
CSS0044833 Camellia sinensis var. sinensis HOM05D000108 ORTHO05D006029 5.1e-09 65.9 44 63.6
CARHR166590 Cardamine hirsuta HOM05D001286 ORTHO05D000440 6.6e-09 65.5 176 28.4
CiPaw.07G014600 Carya illinoinensis HOM05D000108 ORTHO05D006029 6.6e-09 65.5 38 73.7
Cc06_g05910 Coffea canephora HOM05D001286 ORTHO05D000440 6.6e-09 65.5 180 28.3
Actinidia19806 Actinidia chinensis HOM05D000273 ORTHO05D006029 8.6e-09 65.1 44 59.1
SHI18208 Sapria himalayana HOM05D000108 ORTHO05D006029 8.6e-09 65.1 70 48.6
Atru.chr2.422 Acer truncatum HOM05D001286 ORTHO05D000440 1.1e-08 64.7 158 28.5
AL5G37800 Arabidopsis lyrata HOM05D001286 ORTHO05D000440 1.1e-08 64.7 164 27.4
Carub.0005s3009 Capsella rubella HOM05D000108 ORTHO05D006029 1.1e-08 64.7 45 62.2
COL.COLO4_15075 Corchorus olitorius HOM05D010078 ORTHO05D000440 1.1e-08 64.7 171 28.7
COL.COLO4_15078 Corchorus olitorius HOM05D010078 ORTHO05D000440 1.1e-08 64.7 173 30.6
ECA248G1117 Erigeron canadensis HOM05D008265 ORTHO05D000440 1.1e-08 64.7 184 26.6
MBI05_g33287_MAGBIO Magnolia biondii HOM05D000108 ORTHO05D006029 1.1e-08 64.7 38 65.8
PSO210G5716 Papaver somniferum HOM05D007879 ORTHO05D000440 1.1e-08 64.7 165 30.3
PSO832G2385 Papaver somniferum HOM05D007879 ORTHO05D000440 1.1e-08 64.7 165 29.7
Psat3g032440 Pisum sativum HOM05D001286 ORTHO05D000440 1.1e-08 64.7 165 26.1
COL.COLO4_15063 Corchorus olitorius HOM05D010078 ORTHO05D000440 1.5e-08 64.3 212 26.9
Haze_19622 Corylus avellana HOM05D001286 ORTHO05D000440 1.5e-08 64.3 169 29.0
ECA236G4173 Erigeron canadensis HOM05D001286 ORTHO05D000440 1.5e-08 64.3 166 27.1
MBI05_g40560_MAGBIO Magnolia biondii HOM05D000108 ORTHO05D006029 1.5e-08 64.3 38 65.8
Sed0006246 Sechium edule HOM05D000108 ORTHO05D006029 1.5e-08 64.3 38 71.1
GSVIVG01000008001 Vitis vinifera HOM05D000108 ORTHO05D006029 1.5e-08 64.3 38 73.7
Aqoxy2G02776 Aquilegia oxysepala HOM05D000108 ORTHO05D006029 2.5e-08 63.5 44 54.5
COL.COLO4_31677 Corchorus olitorius HOM05D001286 ORTHO05D000440 2.5e-08 63.5 213 29.6
Prupe.6G330200 Prunus persica HOM05D000108 ORTHO05D006029 2.5e-08 63.5 38 68.4
FvH4_6g05340 Fragaria vesca HOM05D000108 ORTHO05D006029 3.3e-08 63.2 70 44.3
FAN02G0002 Fragaria x ananassa HOM05D000108 ORTHO05D006029 3.3e-08 63.2 70 44.3
FAN09G1914 Fragaria x ananassa HOM05D000273 ORTHO05D006029 3.3e-08 63.2 70 44.3
FAN14G1533 Fragaria x ananassa HOM05D000108 ORTHO05D006029 3.3e-08 63.2 70 44.3
FAN14G3015 Fragaria x ananassa HOM05D000108 ORTHO05D006029 3.3e-08 63.2 70 44.3
FAN05G0788 Fragaria x ananassa HOM05D000108 ORTHO05D006029 4.3e-08 62.8 70 42.9
FAN05G0886 Fragaria x ananassa HOM05D000108 ORTHO05D006029 4.3e-08 62.8 70 42.9
Ciclev10011976m.g Citrus clementina HOM05D001286 ORTHO05D000440 5.6e-08 62.4 172 26.7
CARHR054340 Cardamine hirsuta HOM05D001286 ORTHO05D000440 7.3e-08 62.0 168 25.6
Eucgr.K01889 Eucalyptus grandis HOM05D000108 ORTHO05D006029 7.3e-08 62.0 45 60.0
ECA238G3783 Erigeron canadensis HOM05D008265 ORTHO05D000440 9.5e-08 61.6 227 25.1
ECA248G3052 Erigeron canadensis HOM05D008265 ORTHO05D000440 9.5e-08 61.6 179 25.1
Lj1g0019134 Lotus japonicus HOM05D000108 ORTHO05D006029 9.5e-08 61.6 45 60.0
MD12G1223800 Malus domestica HOM05D000108 ORTHO05D006029 9.5e-08 61.6 38 63.2
PSO210G1121 Papaver somniferum HOM05D000108 ORTHO05D006029 9.5e-08 61.6 72 44.4
Sc09g0003360 Simmondsia chinensis HOM05D006710 ORTHO05D006029 9.5e-08 61.6 38 65.8
Thecc.05G308300 Theobroma cacao HOM05D000108 ORTHO05D006029 1.2e-07 61.2 38 60.5
AT3G56470 Arabidopsis thaliana HOM05D001286 ORTHO05D000440 1.6e-07 60.8 167 26.3
Carub.0004s2747 Capsella rubella HOM05D001286 ORTHO05D000440 1.6e-07 60.8 174 27.6
ECA238G4312 Erigeron canadensis HOM05D008265 ORTHO05D000440 1.6e-07 60.8 187 24.1
Glyma.15G256400 Glycine max HOM05D000108 ORTHO05D006029 1.6e-07 60.8 46 56.5
PGR102G1168 Punica granatum HOM05D000108 ORTHO05D006029 1.6e-07 60.8 38 68.4
A10p32250 Brassica napus HOM05D001286 ORTHO05D000440 2.1e-07 60.5 170 25.9
COL.COLO4_13517 Corchorus olitorius HOM05D000273 ORTHO05D006029 2.1e-07 60.5 38 60.5
COL.COLO4_16160 Corchorus olitorius HOM05D000108 ORTHO05D006029 2.1e-07 60.5 38 60.5
Potri.005G038900 Populus trichocarpa HOM05D000108 ORTHO05D006029 2.1e-07 60.5 69 46.4
SalBow5G0045 Salvia bowleyana HOM05D000108 ORTHO05D006029 2.1e-07 60.5 44 56.8
SalBow5G4695 Salvia bowleyana HOM05D000108 ORTHO05D006029 2.1e-07 60.5 44 56.8
TWI12G1091 Tripterygium wilfordii HOM05D001286 ORTHO05D000440 2.1e-07 60.5 196 28.6
Nn4g26164 Nelumbo nucifera HOM05D000108 ORTHO05D006029 2.8e-07 60.1 38 63.2
Nitab4.5_0000692g0040 Nicotiana tabacum HOM05D001286 ORTHO05D000440 2.8e-07 60.1 163 28.8
PSO407G0355 Papaver somniferum HOM05D000108 ORTHO05D006029 2.8e-07 60.1 44 52.3
COL.COLO4_08033 Corchorus olitorius HOM05D000182 ORTHO05D000112 3.6e-07 59.7 162 28.4
Aqoxy7G03273 Aquilegia oxysepala HOM05D001286 ORTHO05D000440 4.7e-07 59.3 182 26.9
CANSAT25G0558 Cannabis sativa HOM05D000108 ORTHO05D006029 4.7e-07 59.3 70 44.3
Lalb_Chr15g0077071 Lupinus albus HOM05D000108 ORTHO05D006029 4.7e-07 59.3 38 65.8
PSO170G2040 Papaver somniferum HOM05D000108 ORTHO05D006029 4.7e-07 59.3 44 52.3
RcHm_v2.0_Chr3g0454101 Rosa chinensis HOM05D000108 ORTHO05D006029 4.7e-07 59.3 70 42.9
ECA247G0474 Erigeron canadensis HOM05D007879 ORTHO05D000440 6.2e-07 58.9 159 28.9
Os08g0117000 Oryza sativa ssp. japonica HOM05D000108 ORTHO05D006029 6.2e-07 58.9 46 52.2
TAR633G2196 Trochodendron aralioides HOM05D000108 ORTHO05D006029 6.2e-07 58.9 38 63.2
Duzib128G2000 Durio zibethinus HOM05D000108 ORTHO05D006029 1.1e-06 58.2 38 57.9
Gohir.A11G263132 Gossypium hirsutum HOM05D000108 ORTHO05D006029 1.1e-06 58.2 38 57.9
RcHm_v2.0_Chr3g0473991 Rosa chinensis HOM05D014387 ORTHO05D015131 1.1e-06 58.2 180 28.9
Sp3g32590 Schrenkiella parvula HOM05D001286 ORTHO05D000440 1.1e-06 58.2 163 30.1
TWI63G1693 Tripterygium wilfordii HOM05D001286 ORTHO05D000440 1.1e-06 58.2 178 27.5
arahy.Tifrunner.gnm1.ann1.G0F2H7 Arachis hypogaea HOM05D000108 ORTHO05D006029 1.4e-06 57.8 46 58.7
arahy.Tifrunner.gnm1.ann1.JIGP3F Arachis hypogaea HOM05D000108 ORTHO05D006029 1.4e-06 57.8 46 58.7
Ciclev10003107m.g Citrus clementina HOM05D001286 ORTHO05D000440 1.4e-06 57.8 179 27.4
COL.COLO4_18753 Corchorus olitorius HOM05D001286 ORTHO05D000440 1.4e-06 57.8 175 28.6
ECA233G2298 Erigeron canadensis HOM05D008265 ORTHO05D000440 1.4e-06 57.8 107 34.6
Sabra05G0037700 Salix brachista HOM05D000108 ORTHO05D006029 1.4e-06 57.8 39 59.0
Glyma.08G170500 Glycine max HOM05D000108 ORTHO05D006029 1.8e-06 57.4 46 54.3
Thhalv10005951m.g Eutrema salsugineum HOM05D000108 ORTHO05D006029 2.4e-06 57.0 72 45.8
Zm00001eb260930 Zea mays HOM05D000108 ORTHO05D006029 2.4e-06 57.0 58 46.6
Haze_04806 Corylus avellana HOM05D007879 ORTHO05D000440 3.1e-06 56.6 167 29.9
Oeu047860.1 Olea europaea HOM05D001286 ORTHO05D000440 3.1e-06 56.6 165 26.7
ECA248G2314 Erigeron canadensis HOM05D008265 ORTHO05D000440 4.0e-06 56.2 233 23.2
ECA248G2786 Erigeron canadensis HOM05D008265 ORTHO05D000440 4.0e-06 56.2 188 23.9
Migut.B01216 Erythranthe guttata HOM05D000108 ORTHO05D006029 4.0e-06 56.2 44 56.8
Gohir.D11G273200 Gossypium hirsutum HOM05D000108 ORTHO05D006029 5.2e-06 55.8 38 55.3
Gorai.007G294600 Gossypium raimondii HOM05D000108 ORTHO05D006029 5.2e-06 55.8 38 55.3
Rhsim05G0144600 Rhododendron simsii HOM05D000108 ORTHO05D006029 5.2e-06 55.8 44 54.5
RcHm_v2.0_Chr6g0295501 Rosa chinensis HOM05D012067 ORTHO05D015131 5.2e-06 55.8 168 29.2
C07p24090 Brassica napus HOM05D001286 ORTHO05D000440 6.8e-06 55.5 160 32.5
Sp1g24030 Schrenkiella parvula HOM05D000108 ORTHO05D006029 6.8e-06 55.5 71 46.5
ECA238G3976 Erigeron canadensis HOM05D008265 ORTHO05D000440 8.9e-06 55.1 196 27.6


User provided reference genes

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