Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr2.467 Acer truncatum HOM05D004389 ORTHO05D005457 6.2e-97 357.5 179 100.0
Ciclev10018002m.g Citrus clementina HOM05D004389 ORTHO05D005457 4.0e-80 301.6 179 84.4
Haze_04228 Corylus avellana HOM05D004389 ORTHO05D005457 6.4e-78 294.3 179 82.7
GSVIVG01006266001 Vitis vinifera HOM05D004389 ORTHO05D005457 1.1e-77 293.5 179 81.6
COL.COLO4_29544 Corchorus olitorius HOM05D004389 ORTHO05D005457 3.2e-77 292.0 179 81.6
Haze_23899 Corylus avellana HOM05D004389 ORTHO05D005457 4.2e-77 291.6 178 81.5
Thecc.05G307100 Theobroma cacao HOM05D004389 ORTHO05D005457 7.1e-77 290.8 179 81.0
COL.COLO4_19842 Corchorus olitorius HOM05D004389 ORTHO05D005457 9.3e-77 290.4 179 81.6
CiPaw.07G015300 Carya illinoinensis HOM05D004389 ORTHO05D005457 1.2e-76 290.0 178 80.9
Duzib177G0146 Durio zibethinus HOM05D004389 ORTHO05D005457 2.7e-76 288.9 179 80.4
Dinv23968 Davidia involucrata HOM05D004389 ORTHO05D005457 5.1e-75 284.6 179 79.9
QL03p004595 Quercus lobata HOM05D004389 ORTHO05D005457 1.1e-74 283.5 178 79.2
Cfa006553 Carpinus fangiana HOM05D004389 ORTHO05D003318 2.5e-74 282.3 173 81.5
Nn8g41138 Nelumbo nucifera HOM05D004389 ORTHO05D005457 2.5e-74 282.3 179 80.4
FAN14G5008 Fragaria x ananassa HOM05D004389 ORTHO05D005457 3.3e-74 282.0 179 79.3
FAN18G1342 Fragaria x ananassa HOM05D004389 ORTHO05D005457 7.3e-74 280.8 179 79.3
Rhsim05G0143800 Rhododendron simsii HOM05D004389 ORTHO05D005457 7.3e-74 280.8 179 78.2
Gorai.004G242800 Gossypium raimondii HOM05D004389 ORTHO05D005457 1.3e-73 280.0 178 78.1
RcHm_v2.0_Chr3g0454251 Rosa chinensis HOM05D004389 ORTHO05D005457 1.3e-73 280.0 179 79.9
Gohir.A08G211800 Gossypium hirsutum HOM05D004389 ORTHO05D005457 1.6e-73 279.6 178 78.1
Ciclev10002655m.g Citrus clementina HOM05D004389 ORTHO05D005457 2.1e-73 279.3 179 78.8
TWI73G0431 Tripterygium wilfordii HOM05D004389 ORTHO05D005457 2.1e-73 279.3 179 77.7
TAR383G0075 Trochodendron aralioides HOM05D004389 ORTHO05D005457 2.8e-73 278.9 180 78.3
vmacro19638 Vaccinium macrocarpon HOM05D004389 ORTHO05D005457 2.8e-73 278.9 180 80.0
Duzib128G0997 Durio zibethinus HOM05D004389 ORTHO05D005457 3.6e-73 278.5 179 77.1
FAN05G1752 Fragaria x ananassa HOM05D004389 ORTHO05D005457 3.6e-73 278.5 179 78.8
FAN09G0842 Fragaria x ananassa HOM05D004389 ORTHO05D005457 3.6e-73 278.5 179 79.3
FvH4_6g05471 Fragaria vesca HOM05D004389 ORTHO05D005457 4.8e-73 278.1 179 78.8
FAN05G0231 Fragaria x ananassa HOM05D004389 ORTHO05D005457 6.2e-73 277.7 179 78.8
FAN05G0500 Fragaria x ananassa HOM05D004389 ORTHO05D005457 6.2e-73 277.7 179 78.8
FAN05G0672 Fragaria x ananassa HOM05D004389 ORTHO05D005457 6.2e-73 277.7 179 78.8
PGR031G3032 Punica granatum HOM05D004389 ORTHO05D005457 6.2e-73 277.7 173 79.2
Lj7A473T46 Lonicera japonica HOM05D004389 ORTHO05D005457 1.1e-72 276.9 178 78.1
Lj9C683G9 Lonicera japonica HOM05D004389 ORTHO05D005457 1.4e-72 276.6 178 77.5
Gohir.D08G228501 Gossypium hirsutum HOM05D004389 ORTHO05D005457 3.1e-72 275.4 178 77.0
Manes.09G078200 Manihot esculenta HOM05D004389 ORTHO05D005457 4.0e-72 275.0 179 79.3
Cc02_g33710 Coffea canephora HOM05D004389 ORTHO05D005457 5.3e-72 274.6 179 76.0
PSO063G2909 Papaver somniferum HOM05D004389 ORTHO05D005457 6.9e-72 274.2 173 77.5
Hma1.2p1_0666F.1_g199560 Hydrangea macrophylla HOM05D004389 ORTHO05D005457 1.5e-71 273.1 179 76.0
Hma1.2p1_1362F.1_g278175 Hydrangea macrophylla HOM05D004389 ORTHO05D005457 1.5e-71 273.1 179 76.0
PSO782G4098 Papaver somniferum HOM05D004389 ORTHO05D005457 1.5e-71 273.1 174 75.9
CSS0010710 Camellia sinensis var. sinensis HOM05D004389 ORTHO05D005457 2.0e-71 272.7 179 75.4
Prupe.6G329200 Prunus persica HOM05D004389 ORTHO05D005457 2.0e-71 272.7 179 76.5
TAR626G0408 Trochodendron aralioides HOM05D004389 ORTHO05D005457 2.0e-71 272.7 179 77.7
Actinidia05713 Actinidia chinensis HOM05D004389 ORTHO05D005457 5.8e-71 271.2 179 76.0
CANSAT21G2311 Cannabis sativa HOM05D004389 ORTHO05D005457 5.8e-71 271.2 179 77.7
CANSAT21G1920 Cannabis sativa HOM05D004389 ORTHO05D005457 7.6e-71 270.8 179 77.1
Eucgr.H04472 Eucalyptus grandis HOM05D004389 ORTHO05D005457 7.6e-71 270.8 179 76.5
Medtr3g115100 Medicago truncatula HOM05D004389 ORTHO05D005457 9.9e-71 270.4 179 77.1
Nitab4.5_0002329g0100 Nicotiana tabacum HOM05D004389 ORTHO05D005457 9.9e-71 270.4 179 74.9
MD04G1208300 Malus domestica HOM05D004389 ORTHO05D005457 1.3e-70 270.0 179 74.9
Potri.005G036500 Populus trichocarpa HOM05D004389 ORTHO05D005457 2.2e-70 269.2 180 75.6
FvH4_5g27531 Fragaria vesca HOM05D004389 ORTHO05D005457 2.9e-70 268.9 170 80.0
Glyma.05G086900 Glycine max HOM05D004389 ORTHO05D005457 4.9e-70 268.1 170 77.6
Sabra05G0037000 Salix brachista HOM05D004389 ORTHO05D005457 6.4e-70 267.7 176 77.3
LjContig00312_ERROPOS870357g0027537 Lotus japonicus HOM05D004389 ORTHO05D005457 8.4e-70 267.3 179 76.0
TWI53G0891 Tripterygium wilfordii HOM05D004389 ORTHO05D005457 1.4e-69 266.5 177 75.7
Nitab4.5_0002659g0010 Nicotiana tabacum HOM05D004389 ORTHO05D005457 1.9e-69 266.2 169 77.5
Sc16g0008410 Simmondsia chinensis HOM05D004389 ORTHO05D005457 1.9e-69 266.2 179 74.3
DCAR_008416 Daucus carota HOM05D004389 ORTHO05D005457 2.4e-69 265.8 178 77.0
Glyma.06G240600 Glycine max HOM05D004389 ORTHO05D005457 2.4e-69 265.8 179 76.0
Nitab4.5_0000401g0080 Nicotiana tabacum HOM05D004389 ORTHO05D005457 3.2e-69 265.4 179 74.3
Cpa.g.sc58.76 Carica papaya HOM05D004389 ORTHO05D005457 4.2e-69 265.0 179 73.7
TPR.G33525 Trifolium pratense HOM05D004389 ORTHO05D005457 5.4e-69 264.6 179 77.1
Lj1g0012007 Lotus japonicus HOM05D004389 ORTHO05D005457 7.1e-69 264.2 179 74.9
Oeu045484.1 Olea europaea HOM05D004389 ORTHO05D005457 9.3e-69 263.8 179 74.3
EL10Ac4g09330 Beta vulgaris HOM05D004389 ORTHO05D005457 1.2e-68 263.5 178 74.7
MBI16_g00840_MAGBIO Magnolia biondii HOM05D004389 ORTHO05D005457 1.2e-68 263.5 179 72.1
Potri.013G025600 Populus trichocarpa HOM05D004389 ORTHO05D005457 1.6e-68 263.1 180 74.4
Sed0018697 Sechium edule HOM05D004389 ORTHO05D005457 2.7e-68 262.3 177 76.8
Ah.04g159790 Amaranthus hybridus HOM05D004389 ORTHO05D005457 7.9e-68 260.8 179 73.7
CsaV3_1G039140 Cucumis sativus L. HOM05D004389 ORTHO05D005457 7.9e-68 260.8 179 76.0
MELO3C015339.2 Cucumis melo HOM05D004389 ORTHO05D005457 1.0e-67 260.4 179 76.0
HanXRQChr14g0460141 Helianthus annuus HOM05D004389 ORTHO05D005457 1.3e-67 260.0 169 75.7
PGSC0003DMG400030976 Solanum tuberosum HOM05D004389 ORTHO05D005457 1.3e-67 260.0 179 73.2
Aqoxy7G01925 Aquilegia oxysepala HOM05D004389 ORTHO05D005457 2.3e-67 259.2 181 73.5
arahy.Tifrunner.gnm1.ann1.95MSG7 Arachis hypogaea HOM05D004389 ORTHO05D005457 2.3e-67 259.2 169 76.3
Phvul.007G101500 Phaseolus vulgaris HOM05D004389 ORTHO05D005457 2.3e-67 259.2 179 74.9
AUR62006921 Chenopodium quinoa HOM05D004389 ORTHO05D005457 3.0e-67 258.8 178 74.7
ECA236G1487 Erigeron canadensis HOM05D004389 ORTHO05D005457 8.7e-67 257.3 179 72.6
THA.LOC104805865 Tarenaya hassleriana HOM05D004389 ORTHO05D005457 8.7e-67 257.3 179 70.9
Sopen12g004700 Solanum pennellii HOM05D004389 ORTHO05D005457 1.1e-66 256.9 179 73.2
AUR62005084 Chenopodium quinoa HOM05D004389 ORTHO05D005457 1.5e-66 256.5 168 77.4
Solyc12g009810.3 Solanum lycopersicum HOM05D004389 ORTHO05D005457 1.5e-66 256.5 178 72.5
Aa31sc17G40 Aethionema arabicum HOM05D004389 ORTHO05D005457 2.5e-66 255.8 171 74.3
Sabra13G0026700 Salix brachista HOM05D004389 ORTHO05D005457 2.5e-66 255.8 207 67.6
Hund07052 Selenicereus undatus HOM05D004389 ORTHO05D005457 2.5e-66 255.8 188 69.7
CSS0006579 Camellia sinensis var. sinensis HOM05D004389 ORTHO05D005457 4.3e-66 255.0 179 72.6
Medtr3g096610 Medicago truncatula HOM05D004389 ORTHO05D005457 5.6e-66 254.6 173 74.6
AUR62000890 Chenopodium quinoa HOM05D004389 ORTHO05D005457 9.6e-66 253.8 174 75.3
ClCG03G016830 Citrullus lanatus HOM05D004389 ORTHO05D005457 9.6e-66 253.8 175 77.1
PGSC0003DMG402007838 Solanum tuberosum HOM05D004389 ORTHO05D005457 1.6e-65 253.1 179 72.1
SGA_v2.0_scaffold11G05813 Striga asiatica HOM05D004389 ORTHO05D005457 2.1e-65 252.7 173 72.8
vmacro08924 Vaccinium macrocarpon HOM05D004389 ORTHO05D005457 2.1e-65 252.7 221 63.3
Migut.N00707 Erythranthe guttata HOM05D004389 ORTHO05D005457 2.8e-65 252.3 179 69.3
Sp7g15350 Schrenkiella parvula HOM05D004389 ORTHO05D005457 1.1e-64 250.4 174 71.8
Aa31sc17G90 Aethionema arabicum HOM05D004389 ORTHO05D005457 1.8e-64 249.6 171 71.9
BcaNung00158 Brassica carinata HOM05D004389 ORTHO05D005457 2.4e-64 249.2 170 73.5
SGA_v2.0_scaffold16G07733 Striga asiatica HOM05D004389 ORTHO05D005457 2.4e-64 249.2 172 72.7
GSVIVG01000019001 Vitis vinifera HOM05D004389 ORTHO05D005457 3.1e-64 248.8 157 80.9
CARHR223240 Cardamine hirsuta HOM05D004389 ORTHO05D005457 4.0e-64 248.4 170 72.4
CDE02G2165 Ceratophyllum demersum HOM05D004389 ORTHO05D005457 1.5e-63 246.5 168 73.8
ATR0626G001 Amborella trichopoda HOM05D004389 ORTHO05D005457 2.6e-63 245.7 179 68.2
Carub.0007s2468 Capsella rubella HOM05D004389 ORTHO05D005457 2.6e-63 245.7 171 72.5
BcaC09g50404 Brassica carinata HOM05D004389 ORTHO05D005457 4.5e-63 245.0 169 72.2
A01p20570 Brassica napus HOM05D004389 ORTHO05D005457 4.5e-63 245.0 169 72.8
C01p25870 Brassica napus HOM05D004389 ORTHO05D005457 4.5e-63 245.0 169 72.2
Thhalv10026361m.g Eutrema salsugineum HOM05D004389 ORTHO05D005457 5.8e-63 244.6 174 70.1
BraA01t01985Z Brassica rapa HOM05D004389 ORTHO05D005457 7.6e-63 244.2 169 72.8
BolC1t02532H Brassica oleracea HOM05D004389 ORTHO05D005457 1.0e-62 243.8 169 71.6
BcaB03g14176 Brassica carinata HOM05D004389 ORTHO05D005457 2.9e-62 242.3 170 71.8
unitig_747.g21568 Utricularia gibba HOM05D004389 ORTHO05D005457 2.9e-62 242.3 182 67.0
Zm00001eb272600 Zea mays HOM05D004389 ORTHO05D005457 1.1e-61 240.4 165 72.7
AL7G38020 Arabidopsis lyrata HOM05D004389 ORTHO05D005457 1.4e-61 240.0 174 69.0
Lsat_1_v5_gn_7_96081 Lactuca sativa HOM05D004389 ORTHO05D005457 1.4e-61 240.0 174 70.7
AT4G16710 Arabidopsis thaliana HOM05D004389 ORTHO05D005457 2.5e-61 239.2 174 69.0
AUR62000567 Chenopodium quinoa HOM05D004389 ORTHO05D005457 1.2e-60 236.9 160 75.0
Zm00001eb264580 Zea mays HOM05D004389 ORTHO05D005457 6.0e-60 234.6 172 70.3
HPP92_010418 Vanilla planifolia HOM05D004389 ORTHO05D005457 7.9e-60 234.2 169 71.0
Peaxi162Scf00523g00530 Petunia axillaris HOM05D004389 ORTHO05D005457 3.9e-59 231.9 179 68.2
Rhsim05G0010600 Rhododendron simsii HOM05D004389 ORTHO05D005457 1.1e-58 230.3 201 62.2
RcHm_v2.0_Chr7g0218901 Rosa chinensis HOM05D004389 ORTHO05D005457 1.1e-58 230.3 146 78.8
HanXRQChr04g0126711 Helianthus annuus HOM05D004389 ORTHO05D005457 9.0e-56 220.7 178 66.3
Psat0s2070g0160 Pisum sativum HOM05D004389 ORTHO05D005457 3.4e-55 218.8 150 74.7
SEGI_15909 Sequoiadendron giganteum HOM05D004389 ORTHO05D005457 3.4e-55 218.8 169 65.7
Psat0s1802g0120 Pisum sativum HOM05D004389 ORTHO05D005457 1.0e-54 217.2 150 74.0
Lalb_Chr05g0219701 Lupinus albus HOM05D004389 ORTHO05D005457 3.2e-53 212.2 169 65.7
Dinv40263 Davidia involucrata HOM05D004389 ORTHO05D005457 1.5e-47 193.4 119 82.4
vmacro22564 Vaccinium macrocarpon HOM05D004389 ORTHO05D005457 1.1e-45 187.2 170 60.6
AagrBONN_evm.TU.Sc2ySwM_117.3666 Anthoceros agrestis HOM05D004389 ORTHO05D005457 9.4e-45 184.1 175 53.1
AagrBONN_evm.TU.Sc2ySwM_344.4143 Anthoceros agrestis HOM05D007251 ORTHO05D009266 6.7e-43 177.9 162 54.3
Aqoxy4G02160 Aquilegia oxysepala HOM05D004389 ORTHO05D005457 1.5e-42 176.8 129 72.1
Peaxi162Scf02135g00022 Petunia axillaris HOM05D004389 ORTHO05D005457 2.5e-42 176.0 169 58.6
Prupe.5G030200 Prunus persica HOM05D004389 ORTHO05D005457 3.3e-42 175.6 117 77.8
Mapoly0013s0083 Marchantia polymorpha HOM05D004389 ORTHO05D005457 8.2e-41 171.0 168 51.2
Pp3c11_4930 Physcomitrium patens HOM05D004389 ORTHO05D005457 1.4e-40 170.2 174 50.0
Os02g0467700 Oryza sativa ssp. japonica HOM05D004389 ORTHO05D005457 3.1e-40 169.1 115 73.0
SMO171G0140 Selaginella moellendorffii HOM05D004389 ORTHO05D005457 5.0e-38 161.8 165 50.9
PRCOL_00003734 Prasinoderma coloniale HOM05D004389 ORTHO05D005457 2.7e-36 156.0 161 52.2
vmacro15018 Vaccinium macrocarpon HOM05D004389 ORTHO05D005457 6.1e-36 154.8 166 54.8
Cre13.g585850 Chlamydomonas reinhardtii HOM05D004389 ORTHO05D005457 5.1e-35 151.8 173 49.7
vmacro22211 Vaccinium macrocarpon HOM05D004389 ORTHO05D005457 2.6e-34 149.4 193 50.3
CBR_g24390 Chara braunii HOM05D004389 ORTHO05D005457 4.4e-34 148.7 222 40.5
CAN.G551.74 Capsicum annuum HOM05D004389 ORTHO05D005457 2.2e-33 146.4 104 70.2
Ca_16978_v3 Cicer arietinum L. HOM05D004389 ORTHO05D005457 2.0e-31 139.8 86 80.2
MCO09G816 Micromonas commoda HOM05D004389 ORTHO05D005457 2.6e-31 139.4 164 46.3
Zm00001eb058290 Zea mays HOM05D004389 ORTHO05D005457 1.0e-30 137.5 83 77.1
TPR.G33563 Trifolium pratense HOM05D004389 ORTHO05D005457 5.0e-30 135.2 83 78.3
RhsimUnG0192500 Rhododendron simsii HOM05D004389 ORTHO05D005457 7.2e-29 131.3 98 70.4
Aqoxy5G02271 Aquilegia oxysepala HOM05D004389 ORTHO05D005457 3.6e-28 129.0 94 69.1
SHI18162 Sapria himalayana HOM05D004389 ORTHO05D005457 1.0e-27 127.5 139 51.1
Nitab4.5_0006964g0010 Nicotiana tabacum HOM05D004389 ORTHO05D005457 1.8e-27 126.7 93 66.7
FvH4_6g10990 Fragaria vesca HOM05D004389 ORTHO05D005457 6.7e-27 124.8 97 67.0
TPR.G30972 Trifolium pratense HOM05D004389 ORTHO05D005457 9.7e-26 120.9 88 67.0
MD15G1188200 Malus domestica HOM05D004389 ORTHO05D005457 2.2e-25 119.8 114 57.9
QL07p009462 Quercus lobata HOM05D004389 ORTHO05D005457 2.6e-23 112.8 75 74.7
Actinidia39666 Actinidia chinensis HOM05D004389 ORTHO05D056204 8.0e-20 101.3 144 45.1
Zm00001eb380920 Zea mays HOM05D004389 ORTHO05D005457 2.3e-19 99.8 82 62.2
vmacro15154 Vaccinium macrocarpon HOM05D004389 ORTHO05D022937 6.5e-14 81.6 69 62.3
QL07p009230 Quercus lobata HOM05D004389 ORTHO05D005457 4.0e-11 72.4 85 50.6
SHI18161 Sapria himalayana HOM05D004389 ORTHO05D005457 1.5e-10 70.5 48 68.8
Cfa025624 Carpinus fangiana HOM05D004389 ORTHO05D125512 4.4e-10 68.9 216 30.6
vmacro17239 Vaccinium macrocarpon HOM05D040504 ORTHO05D426804 2.2e-09 66.6 160 33.8
Medtr6g452950 Medicago truncatula HOM05D029366 ORTHO05D022937 3.7e-09 65.9 39 76.9
HPP92_010328 Vanilla planifolia HOM05D004389 ORTHO05D022937 4.9e-09 65.5 41 70.7


User provided reference genes

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