Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr2.447 Acer truncatum HOM05D008052 ORTHO05D010155 4.4e-119 431.4 236 100.0
Ciclev10003106m.g Citrus clementina HOM05D008052 ORTHO05D010155 9.8e-50 201.1 235 50.2
Thecc.05G305400 Theobroma cacao HOM05D008052 ORTHO05D010155 1.6e-39 167.2 237 46.0
Duzib106G0088 Durio zibethinus HOM05D008052 ORTHO05D010155 2.0e-39 166.8 246 43.5
Cpa.g.sc48.31 Carica papaya HOM05D008052 ORTHO05D010155 9.5e-37 157.9 239 44.8
Gohir.A11G296000 Gossypium hirsutum HOM05D008052 ORTHO05D010155 4.0e-35 152.5 239 41.4
Gorai.007G342900 Gossypium raimondii HOM05D008052 ORTHO05D010155 4.0e-35 152.5 239 42.3
Potri.013G024500 Populus trichocarpa HOM05D008052 ORTHO05D010155 4.0e-35 152.5 223 43.5
Gohir.D11G310900 Gossypium hirsutum HOM05D008052 ORTHO05D010155 1.2e-34 151.0 239 41.8
Sabra13G0025900 Salix brachista HOM05D008052 ORTHO05D010155 2.0e-31 140.2 237 39.2
Manes.09G165300 Manihot esculenta HOM05D008052 ORTHO05D010155 8.6e-30 134.8 234 40.2
COL.COLO4_13498 Corchorus olitorius HOM05D008052 ORTHO05D010155 4.0e-27 125.9 238 38.7
TAR633G0175 Trochodendron aralioides HOM05D008052 ORTHO05D010155 4.9e-25 119.0 189 40.2
Sc09g0003250 Simmondsia chinensis HOM05D008052 ORTHO05D010155 8.3e-25 118.2 202 36.6
TWI56G0838 Tripterygium wilfordii HOM05D008052 ORTHO05D010155 8.3e-25 118.2 231 35.5
Prupe.6G328200 Prunus persica HOM05D008052 ORTHO05D010155 3.2e-24 116.3 240 38.3
CANSAT54G0621 Cannabis sativa HOM05D008052 ORTHO05D010155 9.2e-24 114.8 205 40.0
QL02p094100 Quercus lobata HOM05D008052 ORTHO05D010155 1.3e-22 110.9 148 50.7
PGR031G3742 Punica granatum HOM05D008052 ORTHO05D010155 6.6e-22 108.6 193 40.4
MSTRG.28007 Avicennia marina HOM05D008052 ORTHO05D010155 1.5e-21 107.5 194 35.6
TAR362G0883 Trochodendron aralioides HOM05D008052 ORTHO05D010155 1.5e-21 107.5 174 38.5
RcHm_v2.0_Chr3g0454361 Rosa chinensis HOM05D008052 ORTHO05D010155 3.6e-20 102.8 242 36.8
Nn4g26221 Nelumbo nucifera HOM05D008052 ORTHO05D010155 1.1e-19 101.3 213 36.6
AT5G27440 Arabidopsis thaliana HOM05D008052 ORTHO05D010155 1.4e-19 100.9 209 35.4
Sed0020219 Sechium edule HOM05D008052 ORTHO05D010155 8.9e-19 98.2 214 35.0
MD12G1221400 Malus domestica HOM05D008052 ORTHO05D010155 4.4e-18 95.9 221 40.7
Nitab4.5_0004570g0050 Nicotiana tabacum HOM05D008052 ORTHO05D010155 4.4e-18 95.9 207 33.3
Thhalv10005402m.g Eutrema salsugineum HOM05D008052 ORTHO05D010155 9.8e-18 94.7 208 35.1
THA.LOC104802806 Tarenaya hassleriana HOM05D008052 ORTHO05D010155 1.3e-17 94.4 210 33.8
MELO3C004280.2 Cucumis melo HOM05D008052 ORTHO05D010155 1.7e-17 94.0 235 34.9
MD04G1207300 Malus domestica HOM05D008052 ORTHO05D010155 2.9e-17 93.2 239 41.0
ClCG02G015920 Citrullus lanatus HOM05D008052 ORTHO05D010155 3.7e-17 92.8 236 33.1
Sp2g20660 Schrenkiella parvula HOM05D008052 ORTHO05D010155 3.7e-17 92.8 205 35.6
Sed0004902 Sechium edule HOM05D008052 ORTHO05D010155 3.7e-17 92.8 218 34.9
Haze_04211 Corylus avellana HOM05D008052 ORTHO05D010155 4.9e-17 92.4 154 47.4
CsaV3_2G005120 Cucumis sativus L. HOM05D008052 ORTHO05D000003 1.4e-16 90.9 218 36.7
FvH4_6g05580 Fragaria vesca HOM05D008052 ORTHO05D010155 1.4e-16 90.9 238 34.5
SalBow3G2994 Salvia bowleyana HOM05D008052 ORTHO05D010155 1.9e-16 90.5 213 32.9
Migut.N01951 Erythranthe guttata HOM05D008052 ORTHO05D010155 2.4e-16 90.1 177 32.8
FAN05G1355 Fragaria x ananassa HOM05D000001 ORTHO05D000003 1.2e-15 87.8 224 36.2
Nitab4.5_0000743g0110 Nicotiana tabacum HOM05D008052 ORTHO05D010155 1.2e-15 87.8 207 30.9
FAN05G4790 Fragaria x ananassa HOM05D000001 ORTHO05D000003 1.6e-15 87.4 224 36.2
CARHR186050 Cardamine hirsuta HOM05D008052 ORTHO05D010155 2.1e-15 87.0 198 33.3
Sopen12g003550 Solanum pennellii HOM05D008052 ORTHO05D010155 2.3e-14 83.6 191 33.5
Carub.0006s2509 Capsella rubella HOM05D008052 ORTHO05D010155 8.6e-14 81.6 199 33.2
Cc02_g33610 Coffea canephora HOM05D008052 ORTHO05D010155 1.1e-13 81.3 166 39.2
PGSC0003DMG400000290 Solanum tuberosum HOM05D008052 ORTHO05D010155 3.3e-13 79.7 193 33.2
Aqoxy2G03290 Aquilegia oxysepala HOM05D008052 ORTHO05D010155 9.5e-13 78.2 210 33.3
Ah.05g168010 Amaranthus hybridus HOM05D038607 ORTHO05D010155 1.2e-12 77.8 209 30.1
A06p37460 Brassica napus HOM05D008052 ORTHO05D010155 1.2e-12 77.8 204 31.4
BraA06t26670Z Brassica rapa HOM05D008052 ORTHO05D010155 1.2e-12 77.8 204 31.4
DCAR_022183 Daucus carota HOM05D008052 ORTHO05D010155 1.2e-12 77.8 158 38.0
C07p40900 Brassica napus HOM05D008052 ORTHO05D010155 2.1e-12 77.0 205 31.7
PSO170G6008 Papaver somniferum HOM05D008052 ORTHO05D010155 3.6e-12 76.3 241 31.5
Ah.06g189190 Amaranthus hybridus HOM05D038607 ORTHO05D010155 1.4e-11 74.3 187 29.9
CiPaw.07G021600 Carya illinoinensis HOM05D008052 ORTHO05D010155 3.1e-11 73.2 148 45.9
Cfa006570 Carpinus fangiana HOM05D008052 ORTHO05D010155 1.3e-09 67.8 158 34.8
PSO302G0085 Papaver somniferum HOM05D008052 ORTHO05D010155 1.3e-09 67.8 189 34.9
Lsat_1_v5_gn_2_64240 Lactuca sativa HOM05D008052 ORTHO05D010155 2.9e-09 66.6 236 28.8
Lalb_Chr21g0310761 Lupinus albus HOM05D014832 ORTHO05D016666 2.9e-09 66.6 231 27.7
Cfa006565 Carpinus fangiana HOM05D008052 ORTHO05D010155 3.7e-09 66.2 146 37.0
Gorai.005G185100 Gossypium raimondii HOM05D008052 ORTHO05D047660 6.4e-09 65.5 104 41.3
AL6G39570 Arabidopsis lyrata HOM05D008052 ORTHO05D010155 1.1e-08 64.7 157 35.0
Gohir.D02G165175 Gossypium hirsutum HOM05D008052 ORTHO05D047660 3.2e-08 63.2 104 39.4
SGA_v2.0_scaffold81G26084 Striga asiatica HOM05D008052 ORTHO05D010155 3.2e-08 63.2 214 33.6
Psat0s1377g0280 Pisum sativum HOM05D014832 ORTHO05D016666 1.6e-07 60.8 228 25.4
FAN14G3020 Fragaria x ananassa HOM05D008052 ORTHO05D010155 3.5e-07 59.7 179 31.8
BcaNung02451 Brassica carinata HOM05D008052 ORTHO05D010155 6.0e-07 58.9 209 27.8
BolC7t44618H Brassica oleracea HOM05D008052 ORTHO05D010155 6.0e-07 58.9 209 27.8
Glyma.10G155700 Glycine max HOM05D014832 ORTHO05D016666 6.0e-07 58.9 192 28.1
Solyc12g008610.3 Solanum lycopersicum HOM05D008052 ORTHO05D010155 7.8e-07 58.5 97 36.1
Phvul.007G181200 Phaseolus vulgaris HOM05D014832 ORTHO05D016666 6.6e-06 55.5 182 28.6


User provided reference genes

Program Settings