Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr2.428 Acer truncatum HOM05D006048 ORTHO05D007642 3.2e-104 381.7 185 100.0
Ciclev10000202m.g Citrus clementina HOM05D006048 ORTHO05D007642 6.7e-70 267.7 182 69.2
Potri.013G023600 Populus trichocarpa HOM05D006048 ORTHO05D007642 4.0e-67 258.5 182 64.8
Sabra13G0025400 Salix brachista HOM05D006048 ORTHO05D007642 4.0e-67 258.5 182 65.4
Sabra05G0036000 Salix brachista HOM05D006048 ORTHO05D007642 2.0e-66 256.1 182 63.7
Potri.005G034100 Populus trichocarpa HOM05D006048 ORTHO05D007642 5.8e-66 254.6 182 63.2
QL03p006882 Quercus lobata HOM05D006048 ORTHO05D007642 2.9e-65 252.3 182 63.7
Haze_04204 Corylus avellana HOM05D006048 ORTHO05D007642 2.4e-64 249.2 184 63.6
Manes.09G166100 Manihot esculenta HOM05D006048 ORTHO05D007642 5.5e-64 248.1 182 64.8
TWI12G1173 Tripterygium wilfordii HOM05D006048 ORTHO05D007642 9.3e-64 247.3 182 61.0
Cfa006579 Carpinus fangiana HOM05D006048 ORTHO05D007642 3.0e-62 242.3 184 63.0
Cpa.g.sc48.39 Carica papaya HOM05D006048 ORTHO05D007642 1.1e-61 240.4 171 64.3
Prupe.6G327100 Prunus persica HOM05D006048 ORTHO05D007642 3.3e-61 238.8 182 57.7
MD04G1206500 Malus domestica HOM05D006048 ORTHO05D007642 4.8e-60 235.0 183 59.6
TWI56G0330 Tripterygium wilfordii HOM05D006048 ORTHO05D007642 6.2e-60 234.6 178 59.0
Dinv23949 Davidia involucrata HOM05D006048 ORTHO05D007642 1.8e-59 233.0 182 58.8
Eucgr.H04481 Eucalyptus grandis HOM05D006048 ORTHO05D007642 1.2e-58 230.3 182 58.8
RcHm_v2.0_Chr3g0454571 Rosa chinensis HOM05D006048 ORTHO05D007642 5.8e-58 228.0 180 57.8
GSVIVG01000040001 Vitis vinifera HOM05D006048 ORTHO05D007642 5.8e-58 228.0 182 57.7
MD12G1220300 Malus domestica HOM05D006048 ORTHO05D007642 2.2e-57 226.1 183 58.5
Thecc.05G304700 Theobroma cacao HOM05D006048 ORTHO05D007642 2.9e-57 225.7 182 56.6
Gohir.A11G264200 Gossypium hirsutum HOM05D006048 ORTHO05D007642 3.8e-57 225.3 183 56.3
Lalb_Chr06g0167761 Lupinus albus HOM05D006048 ORTHO05D007642 3.8e-57 225.3 176 56.8
Lalb_Chr21g0310721 Lupinus albus HOM05D006048 ORTHO05D007642 8.4e-57 224.2 174 56.9
CSS0040601 Camellia sinensis var. sinensis HOM05D006048 ORTHO05D007642 4.2e-56 221.9 182 56.0
TAR636G0181 Trochodendron aralioides HOM05D006048 ORTHO05D007642 5.5e-56 221.5 182 55.5
Gohir.D11G274400 Gossypium hirsutum HOM05D006048 ORTHO05D007642 1.6e-55 219.9 183 55.2
Hma1.2p1_0928F.1_g237870 Hydrangea macrophylla HOM05D006048 ORTHO05D007642 2.1e-55 219.5 182 54.9
Medtr1g082840 Medicago truncatula HOM05D006048 ORTHO05D007642 2.1e-55 219.5 174 56.3
Duzib128G0698 Durio zibethinus HOM05D006048 ORTHO05D007642 3.5e-55 218.8 183 54.6
Gorai.007G296200 Gossypium raimondii HOM05D006048 ORTHO05D007642 7.9e-55 217.6 180 55.0
Ca_10107_v3 Cicer arietinum L. HOM05D006048 ORTHO05D007642 3.9e-54 215.3 174 55.2
FAN02G2040 Fragaria x ananassa HOM05D006048 ORTHO05D007642 1.1e-53 213.8 180 54.4
FAN05G1530 Fragaria x ananassa HOM05D006048 ORTHO05D007642 1.5e-53 213.4 180 53.9
Glyma.20G233200 Glycine max HOM05D006048 ORTHO05D007642 1.5e-53 213.4 174 56.3
COL.COLO4_13482 Corchorus olitorius HOM05D006048 ORTHO05D007642 2.5e-53 212.6 182 54.4
FAN14G2795 Fragaria x ananassa HOM05D006048 ORTHO05D007642 3.3e-53 212.2 180 53.3
FAN14G2991 Fragaria x ananassa HOM05D006048 ORTHO05D007642 4.3e-53 211.8 180 53.3
Nn4g26237 Nelumbo nucifera HOM05D006048 ORTHO05D007642 4.3e-53 211.8 182 53.8
FvH4_6g05680 Fragaria vesca HOM05D006048 ORTHO05D007642 5.7e-53 211.5 180 53.3
FAN09G2502 Fragaria x ananassa HOM05D006048 ORTHO05D007642 7.4e-53 211.1 180 53.9
Lj5g0003009 Lotus japonicus HOM05D006048 ORTHO05D007642 2.8e-52 209.1 174 55.2
Glyma.10G155100 Glycine max HOM05D006048 ORTHO05D007642 4.8e-52 208.4 174 55.2
Actinidia23630 Actinidia chinensis HOM05D006048 ORTHO05D007642 1.1e-51 207.2 182 53.3
PGR031G0290 Punica granatum HOM05D006048 ORTHO05D007642 1.4e-51 206.8 182 53.3
Rhsim07G0182400 Rhododendron simsii HOM05D006048 ORTHO05D007642 4.1e-51 205.3 182 52.2
Hund07062 Selenicereus undatus HOM05D006048 ORTHO05D007642 5.3e-51 204.9 182 52.7
Actinidia05707 Actinidia chinensis HOM05D006048 ORTHO05D007642 2.6e-50 202.6 182 52.2
Sed0020620 Sechium edule HOM05D006048 ORTHO05D007642 4.5e-50 201.8 179 53.1
Phvul.007G180600 Phaseolus vulgaris HOM05D006048 ORTHO05D007642 7.6e-50 201.1 174 52.9
vmacro05021 Vaccinium macrocarpon HOM05D006048 ORTHO05D007642 7.6e-50 201.1 192 49.0
VMungo0720G0675 Vigna mungo HOM05D006048 ORTHO05D007642 1.0e-49 200.7 176 51.7
SalBow8G1366 Salvia bowleyana HOM05D006048 ORTHO05D007642 2.2e-49 199.5 182 53.8
TPR.G6104 Trifolium pratense HOM05D006048 ORTHO05D007642 2.2e-49 199.5 174 52.3
ClCG02G015880 Citrullus lanatus HOM05D006048 ORTHO05D007642 5.0e-49 198.4 177 54.2
PSO170G0056 Papaver somniferum HOM05D006048 ORTHO05D007642 1.1e-48 197.2 182 54.4
Peaxi162Scf00037g00236 Petunia axillaris HOM05D006048 ORTHO05D007642 1.1e-48 197.2 183 50.8
THA.LOC104805873 Tarenaya hassleriana HOM05D006048 ORTHO05D007642 5.5e-48 194.9 181 52.5
Oeu017488.1 Olea europaea HOM05D006048 ORTHO05D007642 7.2e-48 194.5 182 51.1
PSO302G0271 Papaver somniferum HOM05D006048 ORTHO05D007642 7.2e-48 194.5 182 52.7
ECA238G0871 Erigeron canadensis HOM05D006048 ORTHO05D007642 9.3e-48 194.1 185 50.3
Cc02_g33600 Coffea canephora HOM05D006048 ORTHO05D007642 1.2e-47 193.7 183 45.9
MELO3C004275.2 Cucumis melo HOM05D006048 ORTHO05D007642 1.6e-47 193.4 183 50.3
Nn1g02208 Nelumbo nucifera HOM05D006048 ORTHO05D007642 1.6e-47 193.4 184 50.0
Nitab4.5_0008677g0020 Nicotiana tabacum HOM05D006048 ORTHO05D007642 1.6e-47 193.4 182 50.5
Aqoxy2G03311 Aquilegia oxysepala HOM05D006048 ORTHO05D007642 3.6e-47 192.2 184 50.0
CsaV3_2G005180 Cucumis sativus L. HOM05D006048 ORTHO05D007642 4.6e-47 191.8 177 52.0
Nitab4.5_0005388g0020 Nicotiana tabacum HOM05D006048 ORTHO05D007642 4.6e-47 191.8 182 48.9
Sc06g0003370 Simmondsia chinensis HOM05D006048 ORTHO05D007642 6.1e-47 191.4 182 48.9
Sopen01g042410 Solanum pennellii HOM05D006048 ORTHO05D007642 6.1e-47 191.4 183 48.6
Migut.B01039 Erythranthe guttata HOM05D006048 ORTHO05D007642 2.3e-46 189.5 183 49.2
SGA_v2.0_scaffold172G38965 Striga asiatica HOM05D006048 ORTHO05D007642 3.9e-46 188.7 181 49.7
Solyc01g098870.3 Solanum lycopersicum HOM05D006048 ORTHO05D007642 8.7e-46 187.6 183 48.1
AUR62005136 Chenopodium quinoa HOM05D006048 ORTHO05D007642 1.5e-45 186.8 183 49.2
AL1G65400 Arabidopsis lyrata HOM05D006048 ORTHO05D007642 1.9e-45 186.4 180 50.0
MSTRG.20430 Avicennia marina HOM05D006048 ORTHO05D007642 1.9e-45 186.4 182 50.0
PGSC0003DMG401028588 Solanum tuberosum HOM05D006048 ORTHO05D007642 1.9e-45 186.4 183 48.1
THA.LOC104820894 Tarenaya hassleriana HOM05D006048 ORTHO05D007642 1.9e-45 186.4 181 48.6
HanXRQChr15g0463081 Helianthus annuus HOM05D006048 ORTHO05D007642 3.3e-45 185.7 187 51.9
BraA09t37546Z Brassica rapa HOM05D006048 ORTHO05D007642 5.7e-45 184.9 176 51.1
CAN.G1077.18 Capsicum annuum HOM05D006048 ORTHO05D007642 1.6e-44 183.3 183 48.1
BcaC04g22032 Brassica carinata HOM05D006048 ORTHO05D007642 2.2e-44 183.0 176 50.6
C09p24290 Brassica napus HOM05D006048 ORTHO05D007642 2.2e-44 183.0 176 50.6
BolC9t55346H Brassica oleracea HOM05D006048 ORTHO05D007642 2.2e-44 183.0 176 50.6
Ah.06g189270 Amaranthus hybridus HOM05D006048 ORTHO05D007642 2.8e-44 182.6 180 45.6
AT1G54920 Arabidopsis thaliana HOM05D006048 ORTHO05D007642 2.8e-44 182.6 178 50.0
A09p19290 Brassica napus HOM05D006048 ORTHO05D007642 1.4e-43 180.3 176 50.6
Aa31LG2G11800 Aethionema arabicum HOM05D006048 ORTHO05D007642 4.1e-43 178.7 180 48.3
ATR0626G180 Amborella trichopoda HOM05D006048 ORTHO05D007642 6.9e-43 177.9 183 48.1
AUR62000837 Chenopodium quinoa HOM05D006048 ORTHO05D007642 1.5e-42 176.8 185 47.0
Psat7g077840 Pisum sativum HOM05D006048 ORTHO05D007642 4.5e-42 175.3 152 51.3
EL10Ac4g09343 Beta vulgaris HOM05D006048 ORTHO05D007642 5.9e-42 174.9 180 43.9
CARHR284550 Cardamine hirsuta HOM05D006048 ORTHO05D007642 5.9e-42 174.9 180 47.8
Psat6g149640 Pisum sativum HOM05D006048 ORTHO05D007642 7.7e-42 174.5 147 52.4
Carub.0002s0845 Capsella rubella HOM05D006048 ORTHO05D007642 1.3e-41 173.7 180 47.2
FAN05G2734 Fragaria x ananassa HOM05D006048 ORTHO05D007642 5.0e-41 171.8 151 52.3
Lsat_1_v5_gn_2_64861 Lactuca sativa HOM05D006048 ORTHO05D007642 3.2e-40 169.1 179 46.4
BcaB07g31106 Brassica carinata HOM05D006048 ORTHO05D007642 4.2e-40 168.7 175 48.6
MBI19_g16658_MAGBIO Magnolia biondii HOM05D006048 ORTHO05D007642 7.9e-39 164.5 149 51.7
CDE05G2441 Ceratophyllum demersum HOM05D006048 ORTHO05D007642 6.3e-36 154.8 182 41.2
HPP92_011281 Vanilla planifolia HOM05D006048 ORTHO05D007642 1.8e-30 136.7 180 36.7
HPP92_011303 Vanilla planifolia HOM05D006048 ORTHO05D007642 2.0e-29 133.3 181 37.0
Os11g0148400 Oryza sativa ssp. japonica HOM05D006048 ORTHO05D007642 2.8e-28 129.4 177 40.1
SEGI_14627 Sequoiadendron giganteum HOM05D006048 ORTHO05D007642 4.8e-28 128.6 189 33.9
CiPaw.08G165500 Carya illinoinensis HOM05D006048 ORTHO05D007642 1.1e-24 117.5 83 66.3
Mapoly0011s0030 Marchantia polymorpha HOM05D006048 ORTHO05D007642 1.5e-24 117.1 183 33.3
AagrBONN_evm.TU.Sc2ySwM_344.3982 Anthoceros agrestis HOM05D006048 ORTHO05D007642 1.2e-18 97.4 187 28.9
SMO203G0156 Selaginella moellendorffii HOM05D006048 ORTHO05D007642 4.1e-11 72.4 184 27.2
CDE05G0200 Ceratophyllum demersum HOM05D006048 ORTHO05D007642 8.6e-09 64.7 49 51.0


User provided reference genes

Program Settings