Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr2.3879 Acer truncatum HOM05D002854 ORTHO05D003051 6.9e-96 354.0 180 100.0
Atru.chr2.3881 Acer truncatum HOM05D002854 ORTHO05D003051 6.9e-96 354.0 180 100.0
Atru.chr2.3884 Acer truncatum HOM05D002854 ORTHO05D003051 1.7e-17 93.6 53 88.7
Ciclev10008763m.g Citrus clementina HOM05D002854 ORTHO05D003051 1.1e-16 90.9 53 84.9
ClCG09G021620 Citrullus lanatus HOM05D002854 ORTHO05D003051 2.4e-16 89.7 53 83.0
SGA_v2.0_scaffold168G38585 Striga asiatica HOM05D002854 ORTHO05D003051 2.4e-16 89.7 53 84.9
Sed0026831 Sechium edule HOM05D002854 ORTHO05D003051 3.2e-16 89.4 53 83.0
vmacro11619 Vaccinium macrocarpon HOM05D002854 ORTHO05D003051 4.1e-16 89.0 53 83.0
MELO3C013205.2 Cucumis melo HOM05D002854 ORTHO05D003051 5.4e-16 88.6 53 81.1
CsaV3_7G021450 Cucumis sativus L. HOM05D002854 ORTHO05D003051 5.4e-16 88.6 53 81.1
SGA_v2.0_scaffold7G03530 Striga asiatica HOM05D002854 ORTHO05D003051 7.0e-16 88.2 53 83.0
GSVIVG01014835001 Vitis vinifera HOM05D002854 ORTHO05D003051 7.0e-16 88.2 53 81.1
Migut.M01616 Erythranthe guttata HOM05D002854 ORTHO05D003051 1.2e-15 87.4 53 81.1
Rhsim04G0009700 Rhododendron simsii HOM05D002854 ORTHO05D003051 1.2e-15 87.4 52 82.7
Rhsim06G0232900 Rhododendron simsii HOM05D002854 ORTHO05D003051 1.2e-15 87.4 53 81.1
SalBow3G3879 Salvia bowleyana HOM05D002854 ORTHO05D003051 1.2e-15 87.4 53 81.1
Solyc12g015910.1 Solanum lycopersicum HOM05D002854 ORTHO05D003051 1.6e-15 87.0 53 81.1
Sopen02g026450 Solanum pennellii HOM05D002854 ORTHO05D003051 1.6e-15 87.0 53 81.1
Sopen12g007810 Solanum pennellii HOM05D002854 ORTHO05D003051 1.6e-15 87.0 53 81.1
PGSC0003DMG402029805 Solanum tuberosum HOM05D002854 ORTHO05D003051 1.6e-15 87.0 53 81.1
Nitab4.5_0000134g0070 Nicotiana tabacum HOM05D002854 ORTHO05D003051 2.0e-15 86.7 53 81.1
Sabra11G0140100 Salix brachista HOM05D002854 ORTHO05D003051 2.0e-15 86.7 53 77.4
TAR624G0331 Trochodendron aralioides HOM05D002854 ORTHO05D003051 2.0e-15 86.7 53 81.1
Actinidia10573 Actinidia chinensis HOM05D002854 ORTHO05D003051 3.5e-15 85.9 53 79.2
Actinidia30372 Actinidia chinensis HOM05D002854 ORTHO05D003051 3.5e-15 85.9 53 79.2
Manes.05G202200 Manihot esculenta HOM05D002854 ORTHO05D003051 3.5e-15 85.9 53 77.4
Oeu049427.2 Olea europaea HOM05D002854 ORTHO05D003051 3.5e-15 85.9 53 79.2
Oeu053370.1 Olea europaea HOM05D002854 ORTHO05D003051 3.5e-15 85.9 53 79.2
vmacro09612 Vaccinium macrocarpon HOM05D002854 ORTHO05D003051 3.5e-15 85.9 74 64.9
CANSAT01G0752 Cannabis sativa HOM05D002854 ORTHO05D003051 5.9e-15 85.1 53 77.4
CAN.G222.157 Capsicum annuum HOM05D002854 ORTHO05D003051 5.9e-15 85.1 53 81.1
Haze_09882 Corylus avellana HOM05D002854 ORTHO05D003051 5.9e-15 85.1 53 77.4
DCAR_013778 Daucus carota HOM05D002854 ORTHO05D003051 5.9e-15 85.1 53 79.2
Nitab4.5_0000598g0090 Nicotiana tabacum HOM05D002854 ORTHO05D003051 5.9e-15 85.1 53 79.2
Nitab4.5_0010989g0010 Nicotiana tabacum HOM05D002854 ORTHO05D003051 5.9e-15 85.1 53 79.2
Psat6g048680 Pisum sativum HOM05D002854 ORTHO05D003051 5.9e-15 85.1 53 77.4
SalBow7G2944 Salvia bowleyana HOM05D002854 ORTHO05D003051 5.9e-15 85.1 53 79.2
CSS0015002 Camellia sinensis var. sinensis HOM05D002854 ORTHO05D003051 7.8e-15 84.7 53 79.2
CSS0036877 Camellia sinensis var. sinensis HOM05D002854 ORTHO05D003051 7.8e-15 84.7 53 79.2
CiPaw.10G167200 Carya illinoinensis HOM05D002854 ORTHO05D003051 7.8e-15 84.7 53 75.5
Cc05_g15440 Coffea canephora HOM05D002854 ORTHO05D003051 7.8e-15 84.7 53 77.4
Potri.001G468300 Populus trichocarpa HOM05D002854 ORTHO05D003051 7.8e-15 84.7 53 77.4
Rhsim04G0044300 Rhododendron simsii HOM05D002854 ORTHO05D003051 7.8e-15 84.7 52 80.8
TWI38G2036 Tripterygium wilfordii HOM05D002854 ORTHO05D003051 7.8e-15 84.7 53 75.5
VMungo0331G1734 Vigna mungo HOM05D002854 ORTHO05D003051 7.8e-15 84.7 53 79.2
VMungo0331G0648 Vigna mungo HOM05D002854 ORTHO05D003051 1.0e-14 84.3 53 77.4
Lj3g0013242 Lotus japonicus HOM05D002854 ORTHO05D003051 1.3e-14 84.0 53 73.6
Potri.011G165400 Populus trichocarpa HOM05D002854 ORTHO05D003051 1.3e-14 84.0 53 75.5
Cfa021906 Carpinus fangiana HOM05D002854 ORTHO05D003051 1.7e-14 83.6 53 75.5
Ca_03488_v3 Cicer arietinum L. HOM05D002854 ORTHO05D003051 1.7e-14 83.6 53 75.5
Ca_28527_v3 Cicer arietinum L. HOM05D002854 ORTHO05D003051 1.7e-14 83.6 53 75.5
Phvul.010G102200 Phaseolus vulgaris HOM05D002854 ORTHO05D003051 1.7e-14 83.6 53 77.4
Phvul.010G105600 Phaseolus vulgaris HOM05D002854 ORTHO05D003051 1.7e-14 83.6 53 73.6
TPR.G27227 Trifolium pratense HOM05D002854 ORTHO05D003051 1.7e-14 83.6 53 75.5
unitig_21.g20271 Utricularia gibba HOM05D002854 ORTHO05D003051 1.7e-14 83.6 53 79.2
Sabra16G0317500 Salix brachista HOM05D002854 ORTHO05D003051 2.3e-14 83.2 53 73.6
Eucgr.F02016 Eucalyptus grandis HOM05D002854 ORTHO05D003051 3.0e-14 82.8 53 77.4
Thecc.07G005100 Theobroma cacao HOM05D002854 ORTHO05D003051 3.0e-14 82.8 53 75.5
BcaNung02408 Brassica carinata HOM05D002854 ORTHO05D003051 3.9e-14 82.4 53 75.5
COL.COLO4_07763 Corchorus olitorius HOM05D002854 ORTHO05D003051 3.9e-14 82.4 53 73.6
COL.COLO4_17407 Corchorus olitorius HOM05D002854 ORTHO05D003051 3.9e-14 82.4 53 73.6
Duzib213G0668 Durio zibethinus HOM05D002854 ORTHO05D003051 3.9e-14 82.4 53 73.6
MD11G1039000 Malus domestica HOM05D002854 ORTHO05D003051 3.9e-14 82.4 53 73.6
Medtr1g047990 Medicago truncatula HOM05D002854 ORTHO05D003051 3.9e-14 82.4 53 75.5
Prupe.6G029600 Prunus persica HOM05D002854 ORTHO05D003051 3.9e-14 82.4 53 73.6
PGR083G1211 Punica granatum HOM05D002854 ORTHO05D003051 3.9e-14 82.4 53 75.5
QL08p002520 Quercus lobata HOM05D002854 ORTHO05D003051 3.9e-14 82.4 53 73.6
THA.LOC104817723 Tarenaya hassleriana HOM05D002854 ORTHO05D003051 3.9e-14 82.4 53 75.5
Aa31LG5G11870 Aethionema arabicum HOM05D002854 ORTHO05D003051 5.0e-14 82.0 53 75.5
CARHR234090 Cardamine hirsuta HOM05D002854 ORTHO05D003051 5.0e-14 82.0 53 73.6
Ca_03501_v3 Cicer arietinum L. HOM05D002854 ORTHO05D003051 5.0e-14 82.0 53 73.6
Thhalv10027252m.g Eutrema salsugineum HOM05D002854 ORTHO05D003051 5.0e-14 82.0 53 73.6
Hma1.2p1_2203F.1_g317080 Hydrangea macrophylla HOM05D002854 ORTHO05D003051 5.0e-14 82.0 53 75.5
Nn2g12752 Nelumbo nucifera HOM05D002854 ORTHO05D003051 5.0e-14 82.0 53 77.4
Gohir.A04G002600 Gossypium hirsutum HOM05D002854 ORTHO05D003051 6.6e-14 81.6 52 75.0
Gohir.D05G386800 Gossypium hirsutum HOM05D002854 ORTHO05D003051 6.6e-14 81.6 52 75.0
Gorai.009G453500 Gossypium raimondii HOM05D002854 ORTHO05D003051 6.6e-14 81.6 52 75.0
Lsat_1_v5_gn_7_116481 Lactuca sativa HOM05D002854 ORTHO05D003051 6.6e-14 81.6 53 75.5
Cpa.g.sc12.96 Carica papaya HOM05D002854 ORTHO05D003051 8.6e-14 81.3 53 73.6
CDE10G0817 Ceratophyllum demersum HOM05D001287 ORTHO05D001226 8.6e-14 81.3 53 73.6
Gohir.A02G114500 Gossypium hirsutum HOM05D002854 ORTHO05D003051 8.6e-14 81.3 52 75.0
CDE10G0484 Ceratophyllum demersum HOM05D001287 ORTHO05D001226 1.1e-13 80.9 53 73.6
Lalb_Chr04g0259341 Lupinus albus HOM05D002854 ORTHO05D003051 1.1e-13 80.9 53 73.6
Peaxi162Scf00006g00715 Petunia axillaris HOM05D002854 ORTHO05D003051 1.1e-13 80.9 53 75.5
Sp7g24460 Schrenkiella parvula HOM05D002854 ORTHO05D003051 1.1e-13 80.9 53 71.7
Sc03g0011680 Simmondsia chinensis HOM05D002854 ORTHO05D003051 1.1e-13 80.9 53 73.6
THA.LOC104813459 Tarenaya hassleriana HOM05D002854 ORTHO05D003051 1.1e-13 80.9 53 73.6
AL7G26420 Arabidopsis lyrata HOM05D002854 ORTHO05D003051 1.5e-13 80.5 53 71.7
EL10Ac4g09787 Beta vulgaris HOM05D002854 ORTHO05D003051 1.5e-13 80.5 53 73.6
BcaC09g50717 Brassica carinata HOM05D002854 ORTHO05D003051 1.5e-13 80.5 53 73.6
A01p17770 Brassica napus HOM05D002854 ORTHO05D003051 1.5e-13 80.5 53 73.6
C01p22490 Brassica napus HOM05D002854 ORTHO05D003051 1.5e-13 80.5 53 73.6
BolC1t02180H Brassica oleracea HOM05D002854 ORTHO05D003051 1.5e-13 80.5 53 73.6
BraA01t01732Z Brassica rapa HOM05D002854 ORTHO05D003051 1.5e-13 80.5 53 73.6
TWI39G1293 Tripterygium wilfordii HOM05D002854 ORTHO05D003051 1.5e-13 80.5 53 71.7
Dinv15450 Davidia involucrata HOM05D002854 ORTHO05D003051 1.9e-13 80.1 52 76.9
Glyma.07G062400 Glycine max HOM05D002854 ORTHO05D003051 1.9e-13 80.1 53 73.6
ECA236G2755 Erigeron canadensis HOM05D002854 ORTHO05D003051 3.3e-13 79.3 53 75.5
arahy.Tifrunner.gnm1.ann1.542A2E Arachis hypogaea HOM05D002854 ORTHO05D003051 4.3e-13 79.0 53 73.6
arahy.Tifrunner.gnm1.ann1.SCBD8U Arachis hypogaea HOM05D002854 ORTHO05D003051 4.3e-13 79.0 53 73.6
Duzib170G1116 Durio zibethinus HOM05D002854 ORTHO05D003051 4.3e-13 79.0 53 71.7
Gorai.003G058300 Gossypium raimondii HOM05D002854 ORTHO05D003051 4.3e-13 79.0 52 73.1
Carub.0007s1438 Capsella rubella HOM05D002854 ORTHO05D003051 5.6e-13 78.6 53 69.8
PSO541G3812 Papaver somniferum HOM05D002854 ORTHO05D003051 5.6e-13 78.6 53 73.6
PSO675G2695 Papaver somniferum HOM05D002854 ORTHO05D003051 5.6e-13 78.6 53 73.6
Gohir.D03G055500 Gossypium hirsutum HOM05D002854 ORTHO05D003051 1.2e-12 77.4 52 71.2
Ah.03g134530 Amaranthus hybridus HOM05D002854 ORTHO05D003051 1.6e-12 77.0 70 52.9
Aqoxy7G00765 Aquilegia oxysepala HOM05D002854 ORTHO05D003051 1.6e-12 77.0 53 71.7
AT4G26500 Arabidopsis thaliana HOM05D002854 ORTHO05D003051 2.1e-12 76.6 52 69.2
Cpa.g.sc3.441 Carica papaya HOM05D002854 ORTHO05D003051 2.1e-12 76.6 79 51.9
MBI15_g19867_MAGBIO Magnolia biondii HOM05D002854 ORTHO05D003051 2.1e-12 76.6 53 67.9
HanXRQChr03g0080451 Helianthus annuus HOM05D002854 ORTHO05D003051 2.8e-12 76.3 53 66.0
ECA240G1791 Erigeron canadensis HOM05D000004 ORTHO05D000002 4.7e-12 75.5 53 66.0
SHI08463 Sapria himalayana HOM05D002854 ORTHO05D003051 4.7e-12 75.5 52 69.2
Lsat_1_v5_gn_9_89180 Lactuca sativa HOM05D002854 ORTHO05D003051 2.3e-11 73.2 53 62.3
Mapoly0102s0027 Marchantia polymorpha HOM05D002854 ORTHO05D003051 3.1e-11 72.8 53 64.2
CBR_g26312 Chara braunii HOM05D002854 ORTHO05D003051 5.2e-11 72.0 63 60.3
RcHm_v2.0_Chr5g0075351 Rosa chinensis HOM05D002854 ORTHO05D003051 6.8e-11 71.6 53 62.3
ATR0751G096 Amborella trichopoda HOM05D002854 ORTHO05D003051 1.2e-10 70.9 53 62.3
FAN16G0314 Fragaria x ananassa HOM05D000722 ORTHO05D003051 1.5e-10 70.5 53 60.4
Pp3c6_3890 Physcomitrium patens HOM05D002854 ORTHO05D003051 1.5e-10 70.5 57 61.4
FvH4_3g42140 Fragaria vesca HOM05D002854 ORTHO05D003051 2.6e-10 69.7 53 60.4
FAN11G1641 Fragaria x ananassa HOM05D000722 ORTHO05D003051 2.6e-10 69.7 53 60.4
FAN21G1355 Fragaria x ananassa HOM05D000722 ORTHO05D003051 5.8e-10 68.6 53 60.4
Pp3c5_25080 Physcomitrium patens HOM05D002854 ORTHO05D003051 5.8e-10 68.6 53 64.2
SEGI_08239 Sequoiadendron giganteum HOM05D002854 ORTHO05D003051 1.3e-09 67.4 85 50.6
SEGI_41013 Sequoiadendron giganteum HOM05D002854 ORTHO05D003051 1.3e-09 67.4 85 50.6
PRCOL_00000686 Prasinoderma coloniale HOM05D002854 ORTHO05D003051 2.9e-09 66.2 53 62.3
MCO11G202 Micromonas commoda HOM05D002854 ORTHO05D003051 1.1e-08 64.3 64 57.8
Cre06.g309717 Chlamydomonas reinhardtii HOM05D002854 ORTHO05D003051 2.4e-08 63.2 52 61.5
Zm00001eb333130 Zea mays HOM05D002854 ORTHO05D003051 2.4e-08 63.2 51 58.8
SMO351G0259 Selaginella moellendorffii HOM05D002854 ORTHO05D003051 5.4e-08 62.0 53 56.6
AUR62035644 Chenopodium quinoa HOM05D000722 ORTHO05D000590 7.0e-08 61.6 52 61.5
Os09g0270900 Oryza sativa ssp. japonica HOM05D002854 ORTHO05D003051 7.0e-08 61.6 54 55.6
AUR62017160 Chenopodium quinoa HOM05D001287 ORTHO05D001226 9.2e-08 61.2 42 71.4
HPP92_020504 Vanilla planifolia HOM05D002854 ORTHO05D003051 1.6e-07 60.5 53 56.6
Os03g0153400 Oryza sativa ssp. japonica HOM05D002854 ORTHO05D003051 2.7e-07 59.7 54 53.7
BcaC06g32740 Brassica carinata HOM05D002854 ORTHO05D003051 6.0e-07 58.5 53 62.3


User provided reference genes

Program Settings