Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr2.3824 Acer truncatum HOM05D004536 ORTHO05D005628 6.2e-79 297.4 146 100.0
Cfa005976 Carpinus fangiana HOM05D004536 ORTHO05D005628 6.5e-20 101.3 72 68.1
Haze_04870 Corylus avellana HOM05D004536 ORTHO05D005628 4.2e-19 98.6 89 58.4
Gorai.007G129700 Gossypium raimondii HOM05D004536 ORTHO05D005628 5.5e-19 98.2 55 81.8
Prupe.8G256300 Prunus persica HOM05D004536 ORTHO05D005628 7.2e-19 97.8 73 65.8
QL12p030151 Quercus lobata HOM05D004536 ORTHO05D005628 7.2e-19 97.8 54 81.5
Thecc.01G294900 Theobroma cacao HOM05D004536 ORTHO05D005628 7.2e-19 97.8 69 68.1
Gohir.A11G115900 Gossypium hirsutum HOM05D004536 ORTHO05D005628 2.1e-18 96.3 55 80.0
TAR636G0132 Trochodendron aralioides HOM05D000319 ORTHO05D000903 2.1e-18 96.3 81 55.6
Gohir.D11G120800 Gossypium hirsutum HOM05D004536 ORTHO05D005628 3.6e-18 95.5 55 80.0
CANSAT25G0197 Cannabis sativa HOM05D004536 ORTHO05D005628 6.1e-18 94.7 55 80.0
CiPaw.07G104100 Carya illinoinensis HOM05D004536 ORTHO05D005628 8.0e-18 94.4 53 77.4
Potri.014G132400 Populus trichocarpa HOM05D004536 ORTHO05D005628 3.9e-17 92.0 75 58.7
MD11G1303200 Malus domestica HOM05D004536 ORTHO05D005628 5.2e-17 91.7 74 59.5
Ciclev10024323m.g Citrus clementina HOM05D004536 ORTHO05D005628 8.8e-17 90.9 75 61.3
Dinv33024 Davidia involucrata HOM05D004536 ORTHO05D005628 8.8e-17 90.9 65 67.7
Lj1g0006956 Lotus japonicus HOM05D004536 ORTHO05D005628 8.8e-17 90.9 69 63.8
Nn4g25926 Nelumbo nucifera HOM05D004536 ORTHO05D005628 8.8e-17 90.9 55 74.5
THA.LOC104801260 Tarenaya hassleriana HOM05D004536 ORTHO05D005628 8.8e-17 90.9 62 69.4
CSS0025822 Camellia sinensis var. sinensis HOM05D004536 ORTHO05D005628 1.5e-16 90.1 63 68.3
Sabra02G0151200 Salix brachista HOM05D004536 ORTHO05D005628 1.5e-16 90.1 55 74.5
Sabra02G0151800 Salix brachista HOM05D004536 ORTHO05D005628 1.5e-16 90.1 55 74.5
Cpa.g.sc9.197 Carica papaya HOM05D004536 ORTHO05D005628 2.0e-16 89.7 66 68.2
GSVIVG01010948001 Vitis vinifera HOM05D004536 ORTHO05D005628 2.0e-16 89.7 68 61.8
RcHm_v2.0_Chr6g0293261 Rosa chinensis HOM05D004536 ORTHO05D005628 3.3e-16 89.0 65 64.6
TPR.G9637 Trifolium pratense HOM05D004536 ORTHO05D005628 4.4e-16 88.6 60 68.3
Ca_09139_v3 Cicer arietinum L. HOM05D004536 ORTHO05D005628 5.7e-16 88.2 71 62.0
Medtr7g108500 Medicago truncatula HOM05D004536 ORTHO05D005628 5.7e-16 88.2 71 63.4
Actinidia24840 Actinidia chinensis HOM05D004536 ORTHO05D005628 9.7e-16 87.4 55 74.5
MD03G1283400 Malus domestica HOM05D004536 ORTHO05D005628 9.7e-16 87.4 74 58.1
Manes.05G065100 Manihot esculenta HOM05D004536 ORTHO05D005628 1.3e-15 87.0 93 51.6
FvH4_c6g00040 Fragaria vesca HOM05D004536 ORTHO05D005628 1.7e-15 86.7 86 54.7
FAN15G2314 Fragaria x ananassa HOM05D004536 ORTHO05D005628 1.7e-15 86.7 86 54.7
FAN24G0904 Fragaria x ananassa HOM05D004536 ORTHO05D005628 1.7e-15 86.7 86 54.7
Manes.01G215900 Manihot esculenta HOM05D004536 ORTHO05D005628 1.7e-15 86.7 57 71.9
Hund18118 Selenicereus undatus HOM05D004536 ORTHO05D005628 2.2e-15 86.3 57 68.4
CsaV3_7G029010 Cucumis sativus L. HOM05D004536 ORTHO05D005628 2.8e-15 85.9 53 71.7
SalBow2G0652 Salvia bowleyana HOM05D004536 ORTHO05D005628 2.8e-15 85.9 78 48.7
Glyma.03G211900 Glycine max HOM05D004536 ORTHO05D005628 4.8e-15 85.1 81 50.6
arahy.Tifrunner.gnm1.ann1.BFHA12 Arachis hypogaea HOM05D004536 ORTHO05D005628 8.2e-15 84.3 71 60.6
arahy.Tifrunner.gnm1.ann1.RD3VC2 Arachis hypogaea HOM05D004536 ORTHO05D005628 8.2e-15 84.3 71 60.6
ClCG09G006150 Citrullus lanatus HOM05D004536 ORTHO05D005628 8.2e-15 84.3 53 69.8
Lalb_Chr18g0047231 Lupinus albus HOM05D004536 ORTHO05D005628 8.2e-15 84.3 51 76.5
Sed0010277 Sechium edule HOM05D004536 ORTHO05D005628 8.2e-15 84.3 53 71.7
Rhsim01G0282800 Rhododendron simsii HOM05D004536 ORTHO05D005628 1.1e-14 84.0 95 49.5
vmacro14989 Vaccinium macrocarpon HOM05D004536 ORTHO05D005628 1.4e-14 83.6 55 69.1
CARHR002300 Cardamine hirsuta HOM05D004536 ORTHO05D005628 2.4e-14 82.8 72 56.9
Potri.002G208251 Populus trichocarpa HOM05D004536 ORTHO05D005628 3.1e-14 82.4 55 70.9
Carub.0001s0210 Capsella rubella HOM05D004536 ORTHO05D005628 5.3e-14 81.6 84 52.4
AT1G02970 Arabidopsis thaliana HOM05D004536 ORTHO05D005628 7.0e-14 81.3 54 66.7
PSO210G1618 Papaver somniferum HOM05D004536 ORTHO05D005628 7.0e-14 81.3 90 55.6
Atru.chr5.1223 Acer truncatum HOM05D004536 ORTHO05D005628 9.1e-14 80.9 44 86.4
Aqoxy5G00653 Aquilegia oxysepala HOM05D005016 ORTHO05D005628 9.1e-14 80.9 62 64.5
A09p68450 Brassica napus HOM05D004536 ORTHO05D005628 9.1e-14 80.9 64 62.5
BraA09t42188Z Brassica rapa HOM05D004536 ORTHO05D005628 9.1e-14 80.9 64 62.5
PGR090G0002 Punica granatum HOM05D004536 ORTHO05D005628 9.1e-14 80.9 68 58.8
PGR119G2278 Punica granatum HOM05D004536 ORTHO05D005628 9.1e-14 80.9 68 58.8
Sp1g01960 Schrenkiella parvula HOM05D004536 ORTHO05D005628 9.1e-14 80.9 54 66.7
Thhalv10007445m.g Eutrema salsugineum HOM05D004536 ORTHO05D005628 1.2e-13 80.5 64 60.9
Ah.08g212380 Amaranthus hybridus HOM05D004536 ORTHO05D005628 1.6e-13 80.1 60 63.3
MELO3C016039.2 Cucumis melo HOM05D004536 ORTHO05D005628 1.6e-13 80.1 58 65.5
Lj2A1189G43 Lonicera japonica HOM05D004536 ORTHO05D005628 1.6e-13 80.1 87 50.6
BcaC07g42280 Brassica carinata HOM05D004536 ORTHO05D005628 2.0e-13 79.7 54 66.7
BcaC07g42414 Brassica carinata HOM05D004536 ORTHO05D005628 2.0e-13 79.7 54 66.7
C08p53070 Brassica napus HOM05D004536 ORTHO05D005628 2.0e-13 79.7 63 63.5
Aa31LG1G9600 Aethionema arabicum HOM05D004536 ORTHO05D005628 7.7e-13 77.8 55 63.6
Cc01_g20560 Coffea canephora HOM05D004536 ORTHO05D005628 1.0e-12 77.4 56 62.5
Phvul.001G204900 Phaseolus vulgaris HOM05D004536 ORTHO05D005628 1.0e-12 77.4 89 46.1
VMungo1383G2476 Vigna mungo HOM05D004536 ORTHO05D005628 1.0e-12 77.4 77 55.8
AUR62033185 Chenopodium quinoa HOM05D004536 ORTHO05D005628 1.3e-12 77.0 70 52.9
PSO832G3458 Papaver somniferum HOM05D004536 ORTHO05D005628 1.3e-12 77.0 89 53.9
CDE10G0909 Ceratophyllum demersum HOM05D000137 ORTHO05D000503 2.9e-12 75.9 52 69.2
Eucgr.H01181 Eucalyptus grandis HOM05D004536 ORTHO05D005628 3.8e-12 75.5 52 65.4
MBI16_g23764_MAGBIO Magnolia biondii HOM05D004536 ORTHO05D005628 3.8e-12 75.5 105 40.0
AUR62008593 Chenopodium quinoa HOM05D004536 ORTHO05D005628 6.5e-12 74.7 50 68.0
C08p00400 Brassica napus HOM05D004536 ORTHO05D005628 1.1e-11 73.9 76 50.0
BolC8t46839H Brassica oleracea HOM05D004536 ORTHO05D005628 1.1e-11 73.9 76 50.0
Nitab4.5_0001697g0010 Nicotiana tabacum HOM05D004536 ORTHO05D005628 1.5e-11 73.6 59 55.9
BcaB01g06383 Brassica carinata HOM05D004536 ORTHO05D005628 4.2e-11 72.0 76 50.0
A08p37490 Brassica napus HOM05D004536 ORTHO05D005628 7.2e-11 71.2 80 47.5
BraA08t35647Z Brassica rapa HOM05D004536 ORTHO05D005628 7.2e-11 71.2 80 47.5
HanXRQChr06g0163971 Helianthus annuus HOM05D004536 ORTHO05D005628 7.2e-11 71.2 61 55.7
Nitab4.5_0009457g0010 Nicotiana tabacum HOM05D004536 ORTHO05D005628 1.2e-10 70.5 61 52.5
BcaB03g13494 Brassica carinata HOM05D004536 ORTHO05D005628 2.1e-10 69.7 52 57.7
Psat3g023800 Pisum sativum HOM05D004536 ORTHO05D005628 2.7e-10 69.3 54 55.6
SGA_v2.0_scaffold36G14354 Striga asiatica HOM05D004536 ORTHO05D005628 3.6e-10 68.9 72 47.2
CAN.G339.41 Capsicum annuum HOM05D004536 ORTHO05D005628 6.1e-10 68.2 60 56.7
ECA236G2131 Erigeron canadensis HOM05D004536 ORTHO05D005628 6.1e-10 68.2 55 61.8
Os02g0135300 Oryza sativa ssp. japonica HOM05D004536 ORTHO05D005628 6.1e-10 68.2 63 55.6
Migut.N01407 Erythranthe guttata HOM05D004536 ORTHO05D005628 8.0e-10 67.8 84 46.4
EL10Ac7g17495 Beta vulgaris HOM05D004536 ORTHO05D005628 1.0e-09 67.4 50 66.0
DCAR_012399 Daucus carota HOM05D004536 ORTHO05D005628 1.0e-09 67.4 65 53.8
Lsat_1_v5_gn_8_54521 Lactuca sativa HOM05D004536 ORTHO05D005628 3.0e-09 65.9 56 57.1
Solyc09g074830.3 Solanum lycopersicum HOM05D004536 ORTHO05D005628 4.0e-09 65.5 70 48.6
Sopen09g029670 Solanum pennellii HOM05D004536 ORTHO05D005628 6.7e-09 64.7 54 55.6
Zm00001eb209170 Zea mays HOM05D004536 ORTHO05D005628 1.5e-08 63.5 50 64.0
Ah.15g093870 Amaranthus hybridus HOM05D000154 ORTHO05D000092 4.4e-08 62.0 67 50.7
DCAR_018342 Daucus carota HOM05D004536 ORTHO05D005628 2.8e-07 59.3 61 42.6
Glyma.13G025500 Glycine max HOM05D004536 ORTHO05D005628 6.3e-07 58.2 80 45.0
HPP92_021845 Vanilla planifolia HOM05D004536 ORTHO05D005628 3.1e-06 55.8 55 54.5
ATR0598G141 Amborella trichopoda HOM05D004536 ORTHO05D005628 5.3e-06 55.1 54 50.0
Phvul.001G172200 Phaseolus vulgaris HOM05D004536 ORTHO05D005628 5.3e-06 55.1 79 46.8


User provided reference genes

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