Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr2.3819 Acer truncatum HOM05D000009 ORTHO05D051861 1.8e-84 315.8 159 100.0
Atru.chr2.3790 Acer truncatum HOM05D000009 ORTHO05D000008 1.7e-13 80.1 73 56.2
Atru.chr2.3808 Acer truncatum HOM05D000009 ORTHO05D000008 5.4e-12 75.1 73 53.4
Ciclev10006796m.g Citrus clementina HOM05D000009 ORTHO05D000008 1.0e-10 70.9 129 37.2
Ciclev10007315m.g Citrus clementina HOM05D000009 ORTHO05D000008 1.0e-10 70.9 122 39.3
Ciclev10004188m.g Citrus clementina HOM05D000009 ORTHO05D000008 3.9e-10 68.9 104 42.3
Ciclev10010250m.g Citrus clementina HOM05D000009 ORTHO05D000008 1.1e-09 67.4 117 42.7
Ciclev10024551m.g Citrus clementina HOM05D000009 ORTHO05D000008 1.1e-09 67.4 73 50.7
Duzib133G0386 Durio zibethinus HOM05D000009 ORTHO05D000008 1.5e-09 67.0 123 39.0
Ciclev10023525m.g Citrus clementina HOM05D000009 ORTHO05D000008 2.5e-09 66.2 74 51.4
MD11G1041100 Malus domestica HOM05D000009 ORTHO05D000008 2.5e-09 66.2 99 40.4
CiPaw.16G071100 Carya illinoinensis HOM05D000009 ORTHO05D000008 3.3e-09 65.9 72 48.6
Dinv18981 Davidia involucrata HOM05D000009 ORTHO05D000008 3.3e-09 65.9 72 47.2
MD11G1033600 Malus domestica HOM05D000009 ORTHO05D000008 3.3e-09 65.9 124 37.9
MD11G1033200 Malus domestica HOM05D000009 ORTHO05D000008 4.3e-09 65.5 99 40.4
Atru.chr2.3825 Acer truncatum HOM05D000009 ORTHO05D000008 7.3e-09 64.7 79 44.3
MD02G1288600 Malus domestica HOM05D000009 ORTHO05D000008 7.3e-09 64.7 101 39.6
MD11G1031600 Malus domestica HOM05D000009 ORTHO05D000008 7.3e-09 64.7 70 45.7
Atru.chr1.1716 Acer truncatum HOM05D000009 ORTHO05D000008 9.6e-09 64.3 106 40.6
Atru.chr1.1734 Acer truncatum HOM05D000009 ORTHO05D000008 9.6e-09 64.3 106 40.6
MD11G1040600 Malus domestica HOM05D000009 ORTHO05D000008 9.6e-09 64.3 99 39.4
Gohir.D08G163060 Gossypium hirsutum HOM05D000009 ORTHO05D000008 1.3e-08 63.9 72 48.6
Gorai.004G169700 Gossypium raimondii HOM05D000009 ORTHO05D000008 1.3e-08 63.9 72 48.6
Atru.chr2.3828 Acer truncatum HOM05D000009 ORTHO05D000008 1.6e-08 63.5 72 47.2
Ciclev10024611m.g Citrus clementina HOM05D000009 ORTHO05D000008 1.6e-08 63.5 128 38.3
MD11G1031300 Malus domestica HOM05D000009 ORTHO05D000008 1.6e-08 63.5 99 39.4
Ciclev10018594m.g Citrus clementina HOM05D000009 ORTHO05D000008 2.1e-08 63.2 74 50.0
Ciclev10023260m.g Citrus clementina HOM05D000009 ORTHO05D000008 2.1e-08 63.2 118 33.9
Gohir.A08G142200 Gossypium hirsutum HOM05D000009 ORTHO05D000008 2.1e-08 63.2 72 48.6
CSS0027677 Camellia sinensis var. sinensis HOM05D000009 ORTHO05D000008 2.8e-08 62.8 94 43.6
CiPaw.05G200000 Carya illinoinensis HOM05D000009 ORTHO05D000008 2.8e-08 62.8 114 37.7
Ciclev10018504m.g Citrus clementina HOM05D000009 ORTHO05D000008 2.8e-08 62.8 118 38.1
Atru.chr11.1935 Acer truncatum HOM05D000009 ORTHO05D000008 3.6e-08 62.4 66 48.5
Atru.chr2.2790 Acer truncatum HOM05D000009 ORTHO05D000008 3.6e-08 62.4 102 41.2
CiPaw.05G200100 Carya illinoinensis HOM05D000009 ORTHO05D000008 4.8e-08 62.0 72 47.2
CiPaw.13G012500 Carya illinoinensis HOM05D000009 ORTHO05D000008 4.8e-08 62.0 120 36.7
Ciclev10024119m.g Citrus clementina HOM05D000009 ORTHO05D000008 4.8e-08 62.0 74 48.6
CiPaw.05G200400 Carya illinoinensis HOM05D000009 ORTHO05D000008 6.2e-08 61.6 78 42.3
Ciclev10018492m.g Citrus clementina HOM05D000009 ORTHO05D000008 6.2e-08 61.6 120 38.3
Gohir.D08G163100 Gossypium hirsutum HOM05D000009 ORTHO05D000008 6.2e-08 61.6 72 47.2
QL04p009856 Quercus lobata HOM05D000009 ORTHO05D000008 6.2e-08 61.6 113 37.2
CiPaw.13G008800 Carya illinoinensis HOM05D000009 ORTHO05D000008 8.1e-08 61.2 100 38.0
Dinv13666 Davidia involucrata HOM05D000009 ORTHO05D000008 8.1e-08 61.2 104 41.3
QL04p010600 Quercus lobata HOM05D000009 ORTHO05D000008 8.1e-08 61.2 100 36.0
TAR633G1401 Trochodendron aralioides HOM05D000009 ORTHO05D000008 8.1e-08 61.2 101 39.6
Aa31LG8G1740 Aethionema arabicum HOM05D000009 ORTHO05D000008 1.1e-07 60.8 119 37.8
CSS0047741 Camellia sinensis var. sinensis HOM05D000009 ORTHO05D000008 1.1e-07 60.8 79 45.6
CiPaw.13G012900 Carya illinoinensis HOM05D000009 ORTHO05D000008 1.1e-07 60.8 106 39.6
MD11G1011700 Malus domestica HOM05D000009 ORTHO05D000008 1.1e-07 60.8 73 46.6
QL04p009875 Quercus lobata HOM05D000009 ORTHO05D000008 1.1e-07 60.8 113 37.2
QL04p012365 Quercus lobata HOM05D000009 ORTHO05D000008 1.1e-07 60.8 74 44.6
CSS0011777 Camellia sinensis var. sinensis HOM05D000009 ORTHO05D000008 1.4e-07 60.5 79 44.3
CiPaw.16G092400 Carya illinoinensis HOM05D000009 ORTHO05D000008 1.4e-07 60.5 73 46.6
Ciclev10024038m.g Citrus clementina HOM05D000009 ORTHO05D000008 1.4e-07 60.5 117 35.9
Hma1.2p1_0038F.1_g024030 Hydrangea macrophylla HOM05D000009 ORTHO05D000008 1.4e-07 60.5 123 35.0
QL10p040450 Quercus lobata HOM05D000009 ORTHO05D000008 1.4e-07 60.5 70 47.1
CSS0036702 Camellia sinensis var. sinensis HOM05D000009 ORTHO05D000008 1.8e-07 60.1 79 45.6
QL04p012310 Quercus lobata HOM05D000009 ORTHO05D000008 1.8e-07 60.1 66 47.0
CSS0032320 Camellia sinensis var. sinensis HOM05D000009 ORTHO05D000008 2.4e-07 59.7 79 44.3
CiPaw.13G083000 Carya illinoinensis HOM05D000009 ORTHO05D000008 2.4e-07 59.7 72 43.1
CiPaw.14G004500 Carya illinoinensis HOM05D000009 ORTHO05D000008 2.4e-07 59.7 100 37.0
MD03G1015900 Malus domestica HOM05D000009 ORTHO05D000008 2.4e-07 59.7 74 44.6
QL02p049451 Quercus lobata HOM05D000009 ORTHO05D000008 2.4e-07 59.7 100 37.0
TWI38G1642 Tripterygium wilfordii HOM05D000009 ORTHO05D000008 2.4e-07 59.7 104 39.4
CSS0002424 Camellia sinensis var. sinensis HOM05D000009 ORTHO05D000008 3.1e-07 59.3 79 45.6
CSS0014136 Camellia sinensis var. sinensis HOM05D000009 ORTHO05D000008 3.1e-07 59.3 79 44.3
CSS0041398 Camellia sinensis var. sinensis HOM05D000009 ORTHO05D000008 3.1e-07 59.3 73 49.3
CiPaw.16G069400 Carya illinoinensis HOM05D000009 ORTHO05D000008 3.1e-07 59.3 120 34.2
CiPaw.16G069600 Carya illinoinensis HOM05D000009 ORTHO05D000008 3.1e-07 59.3 56 53.6
CiPaw.16G088500 Carya illinoinensis HOM05D000009 ORTHO05D000008 3.1e-07 59.3 56 53.6
Ciclev10023613m.g Citrus clementina HOM05D000009 ORTHO05D000008 3.1e-07 59.3 103 39.8
DCAR_007914 Daucus carota HOM05D000009 ORTHO05D000008 4.0e-07 58.9 75 46.7
MD11G1030400 Malus domestica HOM05D000009 ORTHO05D000008 4.0e-07 58.9 83 41.0
MD11G1032000 Malus domestica HOM05D000009 ORTHO05D000008 4.0e-07 58.9 71 40.8
Manes.06G013900 Manihot esculenta HOM05D000009 ORTHO05D000008 4.0e-07 58.9 117 34.2
TAR636G2073 Trochodendron aralioides HOM05D000009 ORTHO05D000008 4.0e-07 58.9 73 45.2
CSS0023320 Camellia sinensis var. sinensis HOM05D000009 ORTHO05D000008 5.3e-07 58.5 70 48.6
CSS0039900 Camellia sinensis var. sinensis HOM05D000009 ORTHO05D000008 5.3e-07 58.5 111 38.7
Phvul.011G195100 Phaseolus vulgaris HOM05D000009 ORTHO05D000008 5.3e-07 58.5 81 44.4
TAR633G2677 Trochodendron aralioides HOM05D000009 ORTHO05D000008 5.3e-07 58.5 72 45.8
GSVIVG01036767001 Vitis vinifera HOM05D000009 ORTHO05D000008 5.3e-07 58.5 103 39.8
CSS0009427 Camellia sinensis var. sinensis HOM05D000009 ORTHO05D000008 6.9e-07 58.2 99 40.4
CSS0026695 Camellia sinensis var. sinensis HOM05D000009 ORTHO05D000008 6.9e-07 58.2 70 48.6
CiPaw.16G086500 Carya illinoinensis HOM05D000009 ORTHO05D000008 6.9e-07 58.2 61 47.5
Ciclev10013431m.g Citrus clementina HOM05D000009 ORTHO05D000008 6.9e-07 58.2 73 49.3
Hma1.2p1_1965F.1_g309390 Hydrangea macrophylla HOM05D000009 ORTHO05D000008 6.9e-07 58.2 73 42.5
MD00G1168700 Malus domestica HOM05D000009 ORTHO05D000008 6.9e-07 58.2 83 39.8
MD11G1029800 Malus domestica HOM05D000009 ORTHO05D000008 6.9e-07 58.2 83 39.8
Manes.17G072100 Manihot esculenta HOM05D000009 ORTHO05D000008 6.9e-07 58.2 120 37.5
Prupe.2G022400 Prunus persica HOM05D000009 ORTHO05D000008 6.9e-07 58.2 115 33.0
QL04p007202 Quercus lobata HOM05D000009 ORTHO05D000008 6.9e-07 58.2 74 44.6
QL04p012891 Quercus lobata HOM05D000009 ORTHO05D000008 6.9e-07 58.2 66 45.5
vmacro20413 Vaccinium macrocarpon HOM05D000009 ORTHO05D000008 6.9e-07 58.2 81 44.4
CSS0017960 Camellia sinensis var. sinensis HOM05D000009 ORTHO05D000008 9.0e-07 57.8 115 37.4
CARHR089290 Cardamine hirsuta HOM05D000009 ORTHO05D000008 9.0e-07 57.8 79 44.3
CiPaw.16G092600 Carya illinoinensis HOM05D000009 ORTHO05D000008 9.0e-07 57.8 109 36.7
Ciclev10018499m.g Citrus clementina HOM05D000009 ORTHO05D000008 9.0e-07 57.8 72 48.6
Ciclev10024454m.g Citrus clementina HOM05D000009 ORTHO05D000008 9.0e-07 57.8 119 33.6
QL04p007189 Quercus lobata HOM05D000009 ORTHO05D000008 9.0e-07 57.8 84 42.9
Thecc.01G405400 Theobroma cacao HOM05D000009 ORTHO05D000008 9.0e-07 57.8 118 35.6
TAR623G0468 Trochodendron aralioides HOM05D000009 ORTHO05D000008 9.0e-07 57.8 73 45.2
CSS0033568 Camellia sinensis var. sinensis HOM05D000009 ORTHO05D000008 1.2e-06 57.4 71 47.9
CiPaw.13G160400 Carya illinoinensis HOM05D000009 ORTHO05D000008 1.2e-06 57.4 100 35.0
CiPaw.16G069700 Carya illinoinensis HOM05D000009 ORTHO05D000008 1.2e-06 57.4 60 50.0
Hma1.2p1_0915F.1_g236350 Hydrangea macrophylla HOM05D000009 ORTHO05D000008 1.2e-06 57.4 101 34.7
QL04p013839 Quercus lobata HOM05D000009 ORTHO05D000008 1.2e-06 57.4 57 52.6
RcHm_v2.0_Chr1g0318341 Rosa chinensis HOM05D000009 ORTHO05D000008 1.2e-06 57.4 99 40.4
CSS0045468 Camellia sinensis var. sinensis HOM05D000009 ORTHO05D000008 1.5e-06 57.0 79 44.3
Ciclev10018688m.g Citrus clementina HOM05D000009 ORTHO05D000008 1.5e-06 57.0 109 33.9
Hma1.2p1_0462F.1_g158120 Hydrangea macrophylla HOM05D000009 ORTHO05D000008 1.5e-06 57.0 73 43.8
Phvul.011G193800 Phaseolus vulgaris HOM05D000009 ORTHO05D000008 1.5e-06 57.0 81 43.2
QL04p031187 Quercus lobata HOM05D000009 ORTHO05D000008 2.0e-06 56.6 66 45.5
CSS0039571 Camellia sinensis var. sinensis HOM05D000009 ORTHO05D000008 2.6e-06 56.2 101 39.6
Carub.0003s1420 Capsella rubella HOM05D000009 ORTHO05D000008 2.6e-06 56.2 123 37.4
CAN.G1619.2 Capsicum annuum HOM05D000009 ORTHO05D000008 2.6e-06 56.2 139 30.2
Hma1.2p1_0462F.1_g158150 Hydrangea macrophylla HOM05D000009 ORTHO05D000008 2.6e-06 56.2 98 36.7
Hma1.2p1_0528F.1_g173070 Hydrangea macrophylla HOM05D000009 ORTHO05D000008 2.6e-06 56.2 67 44.8
MD03G1016000 Malus domestica HOM05D000009 ORTHO05D000008 2.6e-06 56.2 74 43.2
MD03G1026000 Malus domestica HOM05D000009 ORTHO05D000008 2.6e-06 56.2 65 46.2
MD03G1026500 Malus domestica HOM05D000009 ORTHO05D000008 2.6e-06 56.2 67 46.3
Potri.001G029300 Populus trichocarpa HOM05D000009 ORTHO05D000008 2.6e-06 56.2 65 46.2
QL10p045481 Quercus lobata HOM05D000009 ORTHO05D000008 2.6e-06 56.2 112 38.4
RcHm_v2.0_Chr1g0347751 Rosa chinensis HOM05D000009 ORTHO05D000008 2.6e-06 56.2 148 33.8
Aa31LG8G1730 Aethionema arabicum HOM05D000009 ORTHO05D000008 3.4e-06 55.8 100 39.0
CiPaw.13G168600 Carya illinoinensis HOM05D000009 ORTHO05D000008 3.4e-06 55.8 101 36.6
FvH4_7g02890 Fragaria vesca HOM05D000009 ORTHO05D000008 3.4e-06 55.8 106 35.8
FAN06G0610 Fragaria x ananassa HOM05D000009 ORTHO05D000008 3.4e-06 55.8 106 35.8
Thecc.01G405300 Theobroma cacao HOM05D000009 ORTHO05D000008 3.4e-06 55.8 118 35.6
TAR633G2751 Trochodendron aralioides HOM05D000009 ORTHO05D000008 3.4e-06 55.8 101 37.6
GSVIVG01000646001 Vitis vinifera HOM05D000009 ORTHO05D000008 3.4e-06 55.8 72 43.1
CSS0027989 Camellia sinensis var. sinensis HOM05D000009 ORTHO05D000008 4.5e-06 55.5 99 41.4
Ciclev10024530m.g Citrus clementina HOM05D000009 ORTHO05D000008 4.5e-06 55.5 102 36.3
FAN03G0120 Fragaria x ananassa HOM05D000009 ORTHO05D000008 4.5e-06 55.5 106 35.8
Potri.004G196100 Populus trichocarpa HOM05D000009 ORTHO05D000008 4.5e-06 55.5 70 41.4
Prupe.2G023600 Prunus persica HOM05D000009 ORTHO05D000008 4.5e-06 55.5 109 31.2
GSVIVG01022951001 Vitis vinifera HOM05D000009 ORTHO05D000008 4.5e-06 55.5 85 41.2
AL3G26850 Arabidopsis lyrata HOM05D000009 ORTHO05D000008 5.8e-06 55.1 79 44.3
CARHR089300 Cardamine hirsuta HOM05D000009 ORTHO05D000008 5.8e-06 55.1 104 36.5
CiPaw.13G160500 Carya illinoinensis HOM05D000009 ORTHO05D000008 5.8e-06 55.1 100 38.0
Ciclev10018540m.g Citrus clementina HOM05D000009 ORTHO05D000008 5.8e-06 55.1 102 37.3
MD03G1015300 Malus domestica HOM05D000009 ORTHO05D000008 5.8e-06 55.1 74 41.9
MD11G1030300 Malus domestica HOM05D000009 ORTHO05D000008 5.8e-06 55.1 107 33.6
Prupe.2G023500 Prunus persica HOM05D000009 ORTHO05D000008 5.8e-06 55.1 99 32.3
GSVIVG01034675001 Vitis vinifera HOM05D000009 ORTHO05D000008 5.8e-06 55.1 90 41.1
Actinidia20689 Actinidia chinensis HOM05D000009 ORTHO05D000008 7.6e-06 54.7 78 43.6
CSS0040534 Camellia sinensis var. sinensis HOM05D000009 ORTHO05D000008 7.6e-06 54.7 99 40.4
Glyma.13G184800 Glycine max HOM05D000009 ORTHO05D000008 7.6e-06 54.7 103 35.9
Hma1.2p1_0227F.1_g095790 Hydrangea macrophylla HOM05D000009 ORTHO05D000008 7.6e-06 54.7 136 33.8
MD03G1025500 Malus domestica HOM05D000009 ORTHO05D000008 7.6e-06 54.7 72 43.1
Manes.17G055200 Manihot esculenta HOM05D000009 ORTHO05D000008 7.6e-06 54.7 77 42.9
SGA_v2.0_scaffold202G41430 Striga asiatica HOM05D000009 ORTHO05D000008 7.6e-06 54.7 113 32.7
Ciclev10018509m.g Citrus clementina HOM05D000009 ORTHO05D000008 9.9e-06 54.3 122 36.9
Dinv03128 Davidia involucrata HOM05D000009 ORTHO05D000008 9.9e-06 54.3 79 39.2
Hma1.2p1_0038F.1_g024270 Hydrangea macrophylla HOM05D000009 ORTHO05D000008 9.9e-06 54.3 70 42.9
Hma1.2p1_1604F.1_g293230 Hydrangea macrophylla HOM05D000009 ORTHO05D000008 9.9e-06 54.3 136 31.6
Lj3g0007540 Lotus japonicus HOM05D000009 ORTHO05D000008 9.9e-06 54.3 101 36.6


User provided reference genes

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