Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr2.3782 Acer truncatum HOM05D004535 ORTHO05D005341 0.0e+00 3585.8 1812 100.0
Ciclev10007234m.g Citrus clementina HOM05D004535 ORTHO05D005341 0.0e+00 3155.2 1823 86.6
GSVIVG01014769001 Vitis vinifera HOM05D004535 ORTHO05D005341 0.0e+00 3029.6 1818 83.9
Dinv19653 Davidia involucrata HOM05D004535 ORTHO05D005341 0.0e+00 3028.4 1822 83.3
Thecc.07G003100 Theobroma cacao HOM05D004535 ORTHO05D005341 0.0e+00 3003.0 1764 85.2
Manes.01G005500 Manihot esculenta HOM05D004535 ORTHO05D005341 0.0e+00 2996.1 1818 82.4
Gorai.009G454100 Gossypium raimondii HOM05D004535 ORTHO05D005341 0.0e+00 2987.2 1804 83.1
TWI38G2299 Tripterygium wilfordii HOM05D004535 ORTHO05D005341 0.0e+00 2976.4 1820 82.3
Prupe.6G032900 Prunus persica HOM05D004535 ORTHO05D005341 0.0e+00 2976.0 1817 81.3
Potri.001G470600 Populus trichocarpa HOM05D004535 ORTHO05D005341 0.0e+00 2975.7 1819 81.6
Hma1.2p1_0193F.1_g084240 Hydrangea macrophylla HOM05D004535 ORTHO05D005341 0.0e+00 2964.1 1817 81.2
CSS0018371 Camellia sinensis var. sinensis HOM05D004535 ORTHO05D005341 0.0e+00 2958.7 1819 81.7
MD11G1042000 Malus domestica HOM05D004535 ORTHO05D005341 0.0e+00 2946.0 1817 80.9
CiPaw.11G209600 Carya illinoinensis HOM05D004535 ORTHO05D005341 0.0e+00 2944.1 1819 80.9
RcHm_v2.0_Chr5g0075021 Rosa chinensis HOM05D004535 ORTHO05D005341 0.0e+00 2944.1 1819 80.7
CANSAT11G1644 Cannabis sativa HOM05D004535 ORTHO05D005341 0.0e+00 2932.9 1819 80.9
FAN16G2454 Fragaria x ananassa HOM05D004535 ORTHO05D005341 0.0e+00 2928.7 1819 80.2
FAN11G1653 Fragaria x ananassa HOM05D004535 ORTHO05D005341 0.0e+00 2923.3 1819 80.0
TAR627G0331 Trochodendron aralioides HOM05D004535 ORTHO05D005341 0.0e+00 2922.9 1817 80.1
Gohir.D05G387450 Gossypium hirsutum HOM05D004535 ORTHO05D005341 0.0e+00 2919.8 1804 81.9
FAN21G2952 Fragaria x ananassa HOM05D004535 ORTHO05D005341 0.0e+00 2915.6 1819 79.9
MD03G1040600 Malus domestica HOM05D004535 ORTHO05D005341 0.0e+00 2913.6 1818 80.3
FAN25G2892 Fragaria x ananassa HOM05D004535 ORTHO05D005341 0.0e+00 2910.2 1819 79.8
Duzib213G0320 Durio zibethinus HOM05D004535 ORTHO05D005341 0.0e+00 2905.5 1818 81.2
Rhsim04G0008600 Rhododendron simsii HOM05D004535 ORTHO05D005341 0.0e+00 2902.1 1835 79.1
Sabra11G0138700 Salix brachista HOM05D004535 ORTHO05D005341 0.0e+00 2899.4 1974 74.9
Lj1C898T24 Lonicera japonica HOM05D004535 ORTHO05D005341 0.0e+00 2876.3 1836 78.8
vmacro09603 Vaccinium macrocarpon HOM05D004535 ORTHO05D005341 0.0e+00 2874.3 1927 75.8
QL08p000781 Quercus lobata HOM05D004535 ORTHO05D005341 0.0e+00 2872.0 1773 81.4
Haze_09903 Corylus avellana HOM05D004535 ORTHO05D005341 0.0e+00 2843.9 1857 78.3
Glyma.18G071500 Glycine max HOM05D004535 ORTHO05D005341 0.0e+00 2843.9 1818 77.2
Medtr3g461520 Medicago truncatula HOM05D004535 ORTHO05D005341 0.0e+00 2832.0 1818 76.8
Glyma.08G336400 Glycine max HOM05D004535 ORTHO05D005341 0.0e+00 2828.5 1819 76.9
Psat5g164120 Pisum sativum HOM05D004535 ORTHO05D005341 0.0e+00 2825.4 1819 76.8
Lalb_Chr18g0050431 Lupinus albus HOM05D004535 ORTHO05D005341 0.0e+00 2820.8 1818 76.7
PGR083G0052 Punica granatum HOM05D004535 ORTHO05D005341 0.0e+00 2818.1 1818 77.0
FvH4_3g41830 Fragaria vesca HOM05D004535 ORTHO05D005341 0.0e+00 2812.7 1756 79.7
Lalb_Chr20g0115261 Lupinus albus HOM05D004535 ORTHO05D005341 0.0e+00 2811.9 1818 76.6
Lj6g0015552 Lotus japonicus HOM05D004535 ORTHO05D005341 0.0e+00 2809.6 1818 76.4
Phvul.006G061700 Phaseolus vulgaris HOM05D004535 ORTHO05D005341 0.0e+00 2796.9 1819 76.4
Carub.0003s1271 Capsella rubella HOM05D004535 ORTHO05D005341 0.0e+00 2792.3 1819 76.6
AL3G25150 Arabidopsis lyrata HOM05D004535 ORTHO05D005341 0.0e+00 2791.9 1819 76.6
Thhalv10019881m.g Eutrema salsugineum HOM05D004535 ORTHO05D005341 0.0e+00 2788.8 1820 76.9
THA.LOC104822705 Tarenaya hassleriana HOM05D004535 ORTHO05D005341 0.0e+00 2787.3 1818 76.6
Gohir.A04G001901 Gossypium hirsutum HOM05D004535 ORTHO05D005341 0.0e+00 2785.4 1675 83.9
BcaB04g18753 Brassica carinata HOM05D004535 ORTHO05D005341 0.0e+00 2784.6 1820 76.4
AT3G13330 Arabidopsis thaliana HOM05D004535 ORTHO05D005341 0.0e+00 2781.1 1819 76.4
BraA03t12967Z Brassica rapa HOM05D004535 ORTHO05D005341 0.0e+00 2775.7 1819 76.1
BcaC01g03999 Brassica carinata HOM05D004535 ORTHO05D005341 0.0e+00 2775.0 1815 76.2
BolC3t16899H Brassica oleracea HOM05D004535 ORTHO05D005341 0.0e+00 2774.6 1816 76.1
ClCG10G004180 Citrullus lanatus HOM05D004535 ORTHO05D005341 0.0e+00 2774.6 1826 76.0
C03p46300 Brassica napus HOM05D004535 ORTHO05D005341 0.0e+00 2774.2 1815 76.2
A03p38140 Brassica napus HOM05D004535 ORTHO05D005341 0.0e+00 2772.3 1819 76.0
Eucgr.F02001 Eucalyptus grandis HOM05D004535 ORTHO05D005341 0.0e+00 2768.0 1816 75.9
Sed0018073 Sechium edule HOM05D004535 ORTHO05D005341 0.0e+00 2768.0 1817 76.2
Aa31LG8G550 Aethionema arabicum HOM05D004535 ORTHO05D005341 0.0e+00 2767.3 1819 76.1
CARHR087940 Cardamine hirsuta HOM05D004535 ORTHO05D005341 0.0e+00 2757.6 1820 75.8
TPR.G14720 Trifolium pratense HOM05D004535 ORTHO05D005341 0.0e+00 2757.2 1818 75.1
MELO3C014086.2 Cucumis melo HOM05D004535 ORTHO05D005341 0.0e+00 2756.9 1813 76.0
HanXRQChr03g0079281 Helianthus annuus HOM05D004535 ORTHO05D005341 0.0e+00 2751.1 1818 75.1
Solyc07g066030.4 Solanum lycopersicum HOM05D004535 ORTHO05D005341 0.0e+00 2747.6 1817 75.2
Sopen07g034220 Solanum pennellii HOM05D004535 ORTHO05D005341 0.0e+00 2747.6 1817 75.2
arahy.Tifrunner.gnm1.ann1.DDNH16 Arachis hypogaea HOM05D004535 ORTHO05D005341 0.0e+00 2743.8 1900 72.6
Sp3g11530 Schrenkiella parvula HOM05D004535 ORTHO05D005341 0.0e+00 2742.6 1820 75.4
Aqoxy4G02281 Aquilegia oxysepala HOM05D004535 ORTHO05D005341 0.0e+00 2736.1 1817 74.8
CsaV3_3G003990 Cucumis sativus L. HOM05D004535 ORTHO05D005341 0.0e+00 2728.7 1813 75.1
Cc05_g15580 Coffea canephora HOM05D004535 ORTHO05D005341 0.0e+00 2721.8 1824 74.9
ECA240G2049 Erigeron canadensis HOM05D004535 ORTHO05D005341 0.0e+00 2716.4 1816 74.8
PSO210G5731 Papaver somniferum HOM05D004535 ORTHO05D005341 0.0e+00 2707.9 1814 74.3
VMungo0540G2510 Vigna mungo HOM05D004535 ORTHO05D005341 0.0e+00 2705.6 1764 76.4
Migut.M01591 Erythranthe guttata HOM05D004535 ORTHO05D005341 0.0e+00 2678.3 1818 73.5
Sc20g0000040 Simmondsia chinensis HOM05D004535 ORTHO05D005341 0.0e+00 2677.1 1820 73.6
Lsat_1_v5_gn_9_89621 Lactuca sativa HOM05D004535 ORTHO05D005341 0.0e+00 2653.2 1811 73.4
Oeu013013.2 Olea europaea HOM05D004535 ORTHO05D005341 0.0e+00 2650.2 1896 71.7
Nitab4.5_0001303g0050 Nicotiana tabacum HOM05D004535 ORTHO05D005341 0.0e+00 2645.2 1804 73.1
AUR62035634 Chenopodium quinoa HOM05D004535 ORTHO05D005341 0.0e+00 2643.6 1819 72.2
QL08p000755 Quercus lobata HOM05D004535 ORTHO05D005341 0.0e+00 2639.8 1946 69.9
MSTRG.15824 Avicennia marina HOM05D004535 ORTHO05D005341 0.0e+00 2638.2 1818 72.2
EL10Ac4g07499 Beta vulgaris HOM05D004535 ORTHO05D005341 0.0e+00 2629.4 1814 72.1
SalBow8G3417 Salvia bowleyana HOM05D004535 ORTHO05D005341 0.0e+00 2628.2 1848 71.7
AUR62017172 Chenopodium quinoa HOM05D004535 ORTHO05D005341 0.0e+00 2625.9 1834 71.3
HanXRQChr13g0409231 Helianthus annuus HOM05D004535 ORTHO05D005341 0.0e+00 2622.8 1815 72.5
Medtr3g461500 Medicago truncatula HOM05D004535 ORTHO05D005341 0.0e+00 2605.9 1854 71.0
Haze_09904 Corylus avellana HOM05D004535 ORTHO05D005341 0.0e+00 2576.2 1905 70.1
MBI15_g37116_MAGBIO Magnolia biondii HOM05D004535 ORTHO05D005341 0.0e+00 2574.3 1791 72.4
Peaxi162Scf00232g00530 Petunia axillaris HOM05D004535 ORTHO05D005341 0.0e+00 2560.4 1835 71.0
SalBow8G2487 Salvia bowleyana HOM05D004535 ORTHO05D005341 0.0e+00 2542.3 1828 70.0
Actinidia03667 Actinidia chinensis HOM05D004535 ORTHO05D005341 0.0e+00 2525.7 1565 82.1
Nn1g08312 Nelumbo nucifera HOM05D004535 ORTHO05D005341 0.0e+00 2511.5 1625 78.0
DCAR_013765 Daucus carota HOM05D004535 ORTHO05D005341 0.0e+00 2508.4 1817 70.1
Hund22978 Selenicereus undatus HOM05D004535 ORTHO05D005341 0.0e+00 2505.3 1818 70.1
Ah.06g180940 Amaranthus hybridus HOM05D004535 ORTHO05D005341 0.0e+00 2469.9 1840 67.2
ATR0751G071 Amborella trichopoda HOM05D004535 ORTHO05D005341 0.0e+00 2407.9 1822 66.7
Nitab4.5_0000152g0130 Nicotiana tabacum HOM05D004535 ORTHO05D005341 0.0e+00 2402.9 1652 73.0
HPP92_018915 Vanilla planifolia HOM05D004535 ORTHO05D005341 0.0e+00 2395.5 1829 66.1
CiPaw.12G142100 Carya illinoinensis HOM05D004535 ORTHO05D005341 0.0e+00 2361.6 1680 71.7
Cpa.g.sc12.80 Carica papaya HOM05D004535 ORTHO05D005341 0.0e+00 2359.3 1741 71.2
Ca_14867_v3 Cicer arietinum L. HOM05D004535 ORTHO05D005341 0.0e+00 2313.1 1515 75.3
arahy.Tifrunner.gnm1.ann1.HJC4WF Arachis hypogaea HOM05D004535 ORTHO05D005341 0.0e+00 2249.9 1441 76.3
Zm00001eb281130 Zea mays HOM05D004535 ORTHO05D005341 0.0e+00 2172.1 1817 60.6
Potri.011G167700 Populus trichocarpa HOM05D004535 ORTHO05D005341 0.0e+00 1934.1 1147 82.2
MD00G1206400 Malus domestica HOM05D004535 ORTHO05D005341 0.0e+00 1931.4 1252 78.0
CDE05G3236 Ceratophyllum demersum HOM05D004535 ORTHO05D005341 0.0e+00 1868.6 1518 63.8
unitig_699.g19598 Utricularia gibba HOM05D004535 ORTHO05D005341 0.0e+00 1779.6 1814 53.5
PGSC0003DMG401022150 Solanum tuberosum HOM05D004535 ORTHO05D005341 0.0e+00 1498.8 945 76.6
Pp3c20_11540 Physcomitrium patens HOM05D004535 ORTHO05D005341 0.0e+00 1435.2 1856 42.8
AagrBONN_evm.TU.Sc2ySwM_228.5886 Anthoceros agrestis HOM05D004535 ORTHO05D005341 0.0e+00 1427.9 1862 43.8
Mapoly0071s0029 Marchantia polymorpha HOM05D004535 ORTHO05D005341 0.0e+00 1416.4 1925 41.6
Mapoly0069s0005 Marchantia polymorpha HOM05D004535 ORTHO05D005341 0.0e+00 1345.5 1870 40.2
Pp3c15_5520 Physcomitrium patens HOM05D004535 ORTHO05D005341 0.0e+00 1257.7 1837 39.5
CAN.G623.63 Capsicum annuum HOM05D004535 ORTHO05D005341 0.0e+00 1233.4 863 74.0
SMO184G0002 Selaginella moellendorffii HOM05D004535 ORTHO05D005341 0.0e+00 1198.7 1861 37.9
SMO340G0109 Selaginella moellendorffii HOM05D004535 ORTHO05D005341 0.0e+00 1175.2 1837 37.0
CAN.G623.64 Capsicum annuum HOM05D004535 ORTHO05D005341 0.0e+00 1116.7 953 61.6
Ca_14861_v3 Cicer arietinum L. HOM05D004535 ORTHO05D005341 0.0e+00 1107.0 724 75.1
SMO239G0001 Selaginella moellendorffii HOM05D004535 ORTHO05D005341 0.0e+00 1091.6 1837 35.8
COL.COLO4_07778 Corchorus olitorius HOM05D004535 ORTHO05D005341 3.1e-297 1026.2 1171 52.4
CBR_g24134 Chara braunii HOM05D004535 ORTHO05D005341 1.5e-275 954.1 1969 32.8
Os06g0301300 Oryza sativa ssp. japonica HOM05D004535 ORTHO05D005341 5.4e-265 919.1 693 64.2
Potri.011G167650 Populus trichocarpa HOM05D004535 ORTHO05D005341 1.6e-221 774.6 505 79.2
Actinidia00829 Actinidia chinensis HOM05D004535 ORTHO05D005341 2.2e-181 641.3 628 61.9
QL10p044954 Quercus lobata HOM05D004535 ORTHO05D005341 3.6e-152 544.3 637 51.6
SEGI_13123 Sequoiadendron giganteum HOM05D004535 ORTHO05D005341 5.2e-143 513.8 458 55.5
Ca_14860_v3 Cicer arietinum L. HOM05D004535 ORTHO05D005341 1.4e-132 479.2 339 73.7
MCO11G531 Micromonas commoda HOM05D004535 ORTHO05D005341 2.2e-125 455.3 1915 25.2
VMungo0540G1109 Vigna mungo HOM05D004535 ORTHO05D005341 8.7e-122 443.4 321 69.2
SEGI_38328 Sequoiadendron giganteum HOM05D004535 ORTHO05D005341 1.2e-118 433.0 468 49.8
MD00G1206600 Malus domestica HOM05D004535 ORTHO05D005341 7.4e-113 413.7 220 86.4
Actinidia00827 Actinidia chinensis HOM05D004535 ORTHO05D005341 1.2e-110 406.4 303 68.6
MD00G1206500 Malus domestica HOM05D004535 ORTHO05D005341 8.7e-106 390.2 248 82.3
VMungo1127G2045 Vigna mungo HOM05D004535 ORTHO05D005341 4.3e-105 387.9 271 72.7
PRCOL_00006556 Prasinoderma coloniale HOM05D004535 ORTHO05D005341 4.8e-88 331.3 1941 22.7
Actinidia03668 Actinidia chinensis HOM05D004535 ORTHO05D005341 2.1e-83 315.8 225 67.1
SEGI_32129 Sequoiadendron giganteum HOM05D004535 ORTHO05D005341 4.6e-83 314.7 360 52.8
Nn1g08306 Nelumbo nucifera HOM05D004535 ORTHO05D005341 3.4e-78 298.5 167 83.2
arahy.Tifrunner.gnm1.ann1.P6R29M Arachis hypogaea HOM05D004535 ORTHO05D005341 2.2e-77 295.8 344 51.2
SEGI_15666 Sequoiadendron giganteum HOM05D004535 ORTHO05D005341 3.4e-41 175.6 138 66.7
Cpa.g.sc12.82 Carica papaya HOM05D004535 ORTHO05D005341 4.1e-39 168.7 95 90.5
Actinidia00828 Actinidia chinensis HOM05D004535 ORTHO05D005341 5.4e-39 168.3 210 50.0
Cre14.g628702 Chlamydomonas reinhardtii HOM05D004535 ORTHO05D005341 4.0e-34 152.1 657 23.4
Cfa027001 Carpinus fangiana HOM05D004535 ORTHO05D005341 1.7e-32 146.7 1776 20.7
arahy.Tifrunner.gnm1.ann1.A7P7U5 Arachis hypogaea HOM05D004535 ORTHO05D005341 2.8e-27 129.4 131 58.0
PSO541G1144 Papaver somniferum HOM05D004535 ORTHO05D005341 2.2e-24 119.8 76 72.4
arahy.Tifrunner.gnm1.ann1.6S2B7N Arachis hypogaea HOM05D012221 ORTHO05D005341 3.7e-24 119.0 121 57.0
Lsat_1_v5_gn_0_5420 Lactuca sativa HOM05D004535 ORTHO05D005341 3.7e-24 119.0 74 74.3
arahy.Tifrunner.gnm1.ann1.QBA8JR Arachis hypogaea HOM05D004535 ORTHO05D005341 1.2e-22 114.0 163 46.0
Psat5g106440 Pisum sativum HOM05D004535 ORTHO05D005341 4.6e-22 112.1 65 87.7
arahy.Tifrunner.gnm1.ann1.EHT35G Arachis hypogaea HOM05D004535 ORTHO05D005341 6.0e-22 111.7 115 56.5
Ca_31034_v3 Cicer arietinum L. HOM05D004535 ORTHO05D005341 3.0e-21 109.4 75 76.0
VMungo1215G1327 Vigna mungo HOM05D004535 ORTHO05D005341 3.4e-17 95.9 72 69.4
SEGI_18126 Sequoiadendron giganteum HOM05D004535 ORTHO05D005341 2.1e-14 86.7 73 50.7
arahy.Tifrunner.gnm1.ann1.HQ6FCP Arachis hypogaea HOM05D004535 ORTHO05D005341 7.8e-14 84.7 170 39.4
PGSC0003DMG402022150 Solanum tuberosum HOM05D004535 ORTHO05D005341 1.3e-13 84.0 96 47.9
Psat4g112520 Pisum sativum HOM05D004535 ORTHO05D005341 1.2e-11 77.4 45 77.8
VMungo0110G0001 Vigna mungo HOM05D004535 ORTHO05D005341 6.2e-11 75.1 63 50.8
CSS0045016 Camellia sinensis var. sinensis HOM05D000011 ORTHO05D000018 1.8e-10 73.6 71 60.6
VMungo0720G2789 Vigna mungo HOM05D003238 ORTHO05D003571 3.2e-07 62.8 52 63.5


User provided reference genes

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