Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr2.3725 Acer truncatum HOM05D004896 ORTHO05D006447 2.9e-34 147.9 71 100.0
Atru.chr1.36 Acer truncatum HOM05D004896 ORTHO05D006447 1.2e-30 136.0 65 98.5
Atru.chr2.563 Acer truncatum HOM05D004866 ORTHO05D005716 2.6e-30 134.8 65 98.5
Atru.chr11.190 Acer truncatum HOM05D004896 ORTHO05D006447 3.4e-30 134.4 65 96.9
Atru.chr7.121 Acer truncatum HOM05D005216 ORTHO05D006453 5.8e-30 133.7 66 97.0
Atru.chr6.2473 Acer truncatum HOM05D004896 ORTHO05D006447 1.3e-29 132.5 65 96.9
Atru.chr3.2666 Acer truncatum HOM05D004896 ORTHO05D006447 4.9e-29 130.6 65 95.4
Atru.chr4.450 Acer truncatum HOM05D004896 ORTHO05D006447 1.1e-28 129.4 65 93.8
CANSAT64G0177 Cannabis sativa HOM05D004896 ORTHO05D006447 5.4e-28 127.1 66 90.9
Manes.15G155100 Manihot esculenta HOM05D004896 ORTHO05D006447 7.0e-28 126.7 66 89.4
ClCG05G013000 Citrullus lanatus HOM05D004896 ORTHO05D006447 1.2e-27 125.9 65 89.2
Ciclev10015882m.g Citrus clementina HOM05D004896 ORTHO05D006447 2.7e-27 124.8 65 89.2
FvH4_6g52310 Fragaria vesca HOM05D004896 ORTHO05D006447 3.5e-27 124.4 65 87.7
Eucgr.I01701 Eucalyptus grandis HOM05D004896 ORTHO05D006447 4.6e-27 124.0 65 89.2
FAN09G1675 Fragaria x ananassa HOM05D004896 ORTHO05D006447 4.6e-27 124.0 65 87.7
TAR629G1306 Trochodendron aralioides HOM05D004896 ORTHO05D006447 4.6e-27 124.0 65 90.8
FvH4_6g52290 Fragaria vesca HOM05D004896 ORTHO05D006447 6.0e-27 123.6 65 87.7
FAN02G3298 Fragaria x ananassa HOM05D004896 ORTHO05D006447 6.0e-27 123.6 65 87.7
FAN05G4015 Fragaria x ananassa HOM05D004896 ORTHO05D006447 6.0e-27 123.6 65 87.7
FAN14G4168 Fragaria x ananassa HOM05D004896 ORTHO05D006447 6.0e-27 123.6 65 87.7
Lj7A604T65 Lonicera japonica HOM05D004896 ORTHO05D006447 7.8e-27 123.2 65 89.2
MD09G1019000 Malus domestica HOM05D004896 ORTHO05D006447 1.0e-26 122.9 65 89.2
arahy.Tifrunner.gnm1.ann1.10VWGS Arachis hypogaea HOM05D004896 ORTHO05D006447 1.3e-26 122.5 65 87.7
arahy.Tifrunner.gnm1.ann1.5ILH08 Arachis hypogaea HOM05D004896 ORTHO05D006447 1.3e-26 122.5 65 87.7
Hma1.2p1_1407F.1_g281400 Hydrangea macrophylla HOM05D004896 ORTHO05D006447 1.3e-26 122.5 65 87.7
Hma1.2p1_1484F.1_g286430 Hydrangea macrophylla HOM05D004896 ORTHO05D006447 1.3e-26 122.5 65 87.7
vmacro18309 Vaccinium macrocarpon HOM05D004896 ORTHO05D006447 1.3e-26 122.5 65 87.7
AUR62030692 Chenopodium quinoa HOM05D004896 ORTHO05D006447 1.7e-26 122.1 65 87.7
AUR62030697 Chenopodium quinoa HOM05D004896 ORTHO05D006447 1.7e-26 122.1 65 87.7
AUR62036338 Chenopodium quinoa HOM05D004896 ORTHO05D006447 1.7e-26 122.1 65 87.7
RcHm_v2.0_Chr2g0173821 Rosa chinensis HOM05D004896 ORTHO05D006447 1.7e-26 122.1 65 86.2
RcHm_v2.0_Chr2g0174241 Rosa chinensis HOM05D004896 ORTHO05D006447 1.7e-26 122.1 65 86.2
GSVIVG01003974001 Vitis vinifera HOM05D004896 ORTHO05D006447 1.7e-26 122.1 65 87.7
BcaB06g27542 Brassica carinata HOM05D004896 ORTHO05D006447 2.3e-26 121.7 66 86.4
A04p13700 Brassica napus HOM05D004896 ORTHO05D006447 2.3e-26 121.7 66 86.4
C04p47490 Brassica napus HOM05D004896 ORTHO05D006447 2.3e-26 121.7 66 86.4
BolC4t26350H Brassica oleracea HOM05D004896 ORTHO05D006447 2.3e-26 121.7 66 86.4
BraA04t17030Z Brassica rapa HOM05D004896 ORTHO05D006447 2.3e-26 121.7 66 86.4
Potri.001G338200 Populus trichocarpa HOM05D004896 ORTHO05D006447 2.3e-26 121.7 65 89.2
Prupe.3G298100 Prunus persica HOM05D004896 ORTHO05D006447 2.3e-26 121.7 65 87.7
EL10Ac5g10496 Beta vulgaris HOM05D004896 ORTHO05D006447 3.0e-26 121.3 65 86.2
CsaV3_3G027540 Cucumis sativus L. HOM05D004896 ORTHO05D006447 3.0e-26 121.3 65 84.6
PGR142G1575 Punica granatum HOM05D004896 ORTHO05D006447 3.0e-26 121.3 65 87.7
Sabra16G0218900 Salix brachista HOM05D004896 ORTHO05D006447 3.0e-26 121.3 65 87.7
Sed0025595 Sechium edule HOM05D004896 ORTHO05D006447 3.0e-26 121.3 65 84.6
Hund14985 Selenicereus undatus HOM05D004896 ORTHO05D006447 3.0e-26 121.3 65 87.7
Ca_03861_v3 Cicer arietinum L. HOM05D004896 ORTHO05D006447 5.0e-26 120.6 65 86.2
MELO3C014823.2 Cucumis melo HOM05D004896 ORTHO05D006447 5.0e-26 120.6 65 84.6
Lj1g0027814 Lotus japonicus HOM05D004896 ORTHO05D006447 5.0e-26 120.6 65 87.7
Phvul.008G145713 Phaseolus vulgaris HOM05D004896 ORTHO05D006447 5.0e-26 120.6 66 86.4
Psat3g168560 Pisum sativum HOM05D004896 ORTHO05D006447 5.0e-26 120.6 65 86.2
Hma1.2p1_1484F.1_g286400 Hydrangea macrophylla HOM05D004896 ORTHO05D006447 6.6e-26 120.2 65 86.2
Lsat_1_v5_gn_0_30781 Lactuca sativa HOM05D004896 ORTHO05D006447 6.6e-26 120.2 66 86.4
Aqoxy1G02023 Aquilegia oxysepala HOM05D004896 ORTHO05D006447 8.6e-26 119.8 65 83.1
Nn5g27187 Nelumbo nucifera HOM05D004896 ORTHO05D006447 8.6e-26 119.8 65 87.7
Glyma.16G066000 Glycine max HOM05D004896 ORTHO05D006447 1.1e-25 119.4 65 86.2
Lalb_Chr14g0362991 Lupinus albus HOM05D004896 ORTHO05D006447 1.1e-25 119.4 65 86.2
VMungo1080G0372 Vigna mungo HOM05D004896 ORTHO05D006447 1.1e-25 119.4 66 86.4
Ah.12g059440 Amaranthus hybridus HOM05D004896 ORTHO05D006447 1.5e-25 119.0 65 83.1
EL10Ac9g21007 Beta vulgaris HOM05D004896 ORTHO05D006447 1.5e-25 119.0 65 83.1
Ca_01399_v3 Cicer arietinum L. HOM05D004896 ORTHO05D006447 1.5e-25 119.0 65 84.6
COL.COLO4_29242 Corchorus olitorius HOM05D004896 ORTHO05D006447 1.5e-25 119.0 65 86.2
Migut.H00045 Erythranthe guttata HOM05D004896 ORTHO05D006447 1.5e-25 119.0 65 86.2
MSTRG.3120 Avicennia marina HOM05D004896 ORTHO05D006447 1.9e-25 118.6 65 84.6
TPR.G1112 Trifolium pratense HOM05D004896 ORTHO05D006447 1.9e-25 118.6 65 84.6
Actinidia18427 Actinidia chinensis HOM05D004896 ORTHO05D006447 2.5e-25 118.2 65 84.6
AL7G49080 Arabidopsis lyrata HOM05D004896 ORTHO05D006447 2.5e-25 118.2 66 84.8
AT5G40660 Arabidopsis thaliana HOM05D004896 ORTHO05D006447 2.5e-25 118.2 66 84.8
Medtr0018s0290 Medicago truncatula HOM05D004896 ORTHO05D006447 2.5e-25 118.2 65 83.1
Carub.0007s3482 Capsella rubella HOM05D004896 ORTHO05D006447 3.3e-25 117.9 66 84.8
CSS0017957 Camellia sinensis var. sinensis HOM05D004896 ORTHO05D006447 4.3e-25 117.5 65 83.1
CSS0036459 Camellia sinensis var. sinensis HOM05D004896 ORTHO05D006447 4.3e-25 117.5 65 83.1
Gohir.A05G342400 Gossypium hirsutum HOM05D004896 ORTHO05D006447 4.3e-25 117.5 65 84.6
Gohir.D04G080440 Gossypium hirsutum HOM05D004896 ORTHO05D006447 4.3e-25 117.5 65 84.6
Gorai.012G091200 Gossypium raimondii HOM05D004896 ORTHO05D006447 4.3e-25 117.5 65 84.6
Hma1.2p1_0383F.1_g140290 Hydrangea macrophylla HOM05D004896 ORTHO05D006447 4.3e-25 117.5 65 84.6
Cpa.g.sc130.54 Carica papaya HOM05D004896 ORTHO05D006447 5.6e-25 117.1 65 84.6
Dinv33394 Davidia involucrata HOM05D004896 ORTHO05D006447 5.6e-25 117.1 65 83.1
Rhsim08G0046600 Rhododendron simsii HOM05D004896 ORTHO05D006447 5.6e-25 117.1 65 83.1
Solyc02g093690.3 Solanum lycopersicum HOM05D004896 ORTHO05D006447 5.6e-25 117.1 65 83.1
Sopen02g038330 Solanum pennellii HOM05D004896 ORTHO05D006447 5.6e-25 117.1 65 83.1
PGSC0003DMG400012644 Solanum tuberosum HOM05D004896 ORTHO05D006447 5.6e-25 117.1 65 83.1
Thhalv10027828m.g Eutrema salsugineum HOM05D004896 ORTHO05D006447 7.3e-25 116.7 66 83.3
Nitab4.5_0001031g0180 Nicotiana tabacum HOM05D004896 ORTHO05D006447 7.3e-25 116.7 65 84.6
TWI56G0223 Tripterygium wilfordii HOM05D004896 ORTHO05D006447 7.3e-25 116.7 66 83.3
ATR0099G063 Amborella trichopoda HOM05D004896 ORTHO05D006447 1.2e-24 115.9 65 80.0
HPP92_020467 Vanilla planifolia HOM05D004896 ORTHO05D006447 1.2e-24 115.9 65 83.1
HPP92_026167 Vanilla planifolia HOM05D004896 ORTHO05D006447 1.2e-24 115.9 65 83.1
CAN.G473.48 Capsicum annuum HOM05D004896 ORTHO05D006447 2.1e-24 115.2 65 81.5
Nitab4.5_0002158g0160 Nicotiana tabacum HOM05D004896 ORTHO05D006447 2.1e-24 115.2 65 83.1
THA.LOC104825307 Tarenaya hassleriana HOM05D004896 ORTHO05D006447 2.1e-24 115.2 65 83.1
CARHR261290 Cardamine hirsuta HOM05D004896 ORTHO05D006447 2.8e-24 114.8 65 83.1
Nitab4.5_0002158g0260 Nicotiana tabacum HOM05D002474 ORTHO05D007142 2.8e-24 114.8 65 83.1
PSO675G8471 Papaver somniferum HOM05D004896 ORTHO05D006447 2.8e-24 114.8 65 81.5
SGA_v2.0_scaffold135G34930 Striga asiatica HOM05D004896 ORTHO05D006447 2.8e-24 114.8 65 83.1
Thecc.04G026600 Theobroma cacao HOM05D004896 ORTHO05D006447 2.8e-24 114.8 65 83.1
MBI19_g04325_MAGBIO Magnolia biondii HOM05D004896 ORTHO05D006447 4.7e-24 114.0 65 81.5
PSO541G0959 Papaver somniferum HOM05D004896 ORTHO05D006447 4.7e-24 114.0 65 80.0
Haze_14796 Corylus avellana HOM05D004896 ORTHO05D006447 6.2e-24 113.6 65 83.1
Duzib264G0232 Durio zibethinus HOM05D004896 ORTHO05D006447 6.2e-24 113.6 65 81.5
Sp7g01200 Schrenkiella parvula HOM05D004896 ORTHO05D006447 6.2e-24 113.6 66 81.8
Actinidia16947 Actinidia chinensis HOM05D004896 ORTHO05D006447 8.0e-24 113.2 65 81.5
Aa31LG9G960 Aethionema arabicum HOM05D004896 ORTHO05D006447 8.0e-24 113.2 66 81.8
HanXRQChr17g0549471 Helianthus annuus HOM05D004896 ORTHO05D006447 1.1e-23 112.8 66 80.3
Cfa007299 Carpinus fangiana HOM05D004896 ORTHO05D006447 3.1e-23 111.3 65 80.0
CDE07G0249 Ceratophyllum demersum HOM05D004896 ORTHO05D006447 3.1e-23 111.3 65 81.5
Sc03g0007130 Simmondsia chinensis HOM05D004896 ORTHO05D006447 3.1e-23 111.3 65 80.0
CiPaw.04G032200 Carya illinoinensis HOM05D004896 ORTHO05D006447 4.0e-23 110.9 65 83.1
Cc07_g00300 Coffea canephora HOM05D004896 ORTHO05D006447 4.0e-23 110.9 65 78.5
SGA_v2.0_scaffold18G08247 Striga asiatica HOM05D004896 ORTHO05D006447 4.0e-23 110.9 66 78.8
unitig_0.g536 Utricularia gibba HOM05D004896 ORTHO05D006447 8.9e-23 109.8 65 78.5
QL02p073334 Quercus lobata HOM05D004896 ORTHO05D006447 1.5e-22 109.0 65 76.9
SHI03827 Sapria himalayana HOM05D004896 ORTHO05D006447 2.0e-22 108.6 64 78.1
DCAR_021752 Daucus carota HOM05D004896 ORTHO05D006447 2.6e-22 108.2 65 78.5
ECA246G3787 Erigeron canadensis HOM05D004896 ORTHO05D006447 3.4e-22 107.8 66 77.3
CDE12G0511 Ceratophyllum demersum HOM05D004896 ORTHO05D006447 9.8e-22 106.3 65 78.5
Zm00001eb329190 Zea mays HOM05D004896 ORTHO05D006447 1.7e-21 105.5 65 72.3
CiPaw.03G049000 Carya illinoinensis HOM05D004896 ORTHO05D006447 1.1e-20 102.8 65 78.5
Os07g0644000 Oryza sativa ssp. japonica HOM05D004896 ORTHO05D006447 1.1e-20 102.8 65 70.8
Oeu064389.1 Olea europaea HOM05D004896 ORTHO05D006447 1.4e-20 102.4 66 71.2
SEGI_10618 Sequoiadendron giganteum HOM05D004896 ORTHO05D006447 1.9e-20 102.1 66 69.7
BcaC04g20647 Brassica carinata HOM05D004896 ORTHO05D006447 2.3e-18 95.1 64 75.0
C09p41080 Brassica napus HOM05D004896 ORTHO05D028223 2.3e-18 95.1 64 75.0
BolC9t56987H Brassica oleracea HOM05D004896 ORTHO05D028223 2.3e-18 95.1 64 75.0
BcaB01g05885 Brassica carinata HOM05D004896 ORTHO05D024046 6.6e-18 93.6 50 86.0
BraA05t20477Z Brassica rapa HOM05D004896 ORTHO05D024046 8.6e-18 93.2 67 68.7
FAN14G0298 Fragaria x ananassa HOM05D004896 ORTHO05D006447 9.5e-17 89.7 48 85.4
BolC7t42010H Brassica oleracea HOM05D004896 ORTHO05D028223 3.6e-16 87.8 52 80.8
A05p15620 Brassica napus HOM05D004896 ORTHO05D024046 8.1e-16 86.7 62 69.4
Atru.chr1.2050 Acer truncatum HOM05D004896 ORTHO05D006447 8.9e-15 83.2 41 95.1
BcaC01g04583 Brassica carinata HOM05D004896 ORTHO05D006447 7.5e-14 80.1 47 80.9
TAR628G1566 Trochodendron aralioides HOM05D004896 ORTHO05D006447 2.4e-12 75.1 49 67.3
Peaxi162Scf00420g00251 Petunia axillaris HOM05D004896 ORTHO05D006447 1.2e-11 72.8 56 60.7
Pp3c2_19250 Physcomitrium patens HOM05D004896 ORTHO05D006447 2.3e-10 68.6 65 50.8
Actinidia35788 Actinidia chinensis HOM05D004896 ORTHO05D006447 9.5e-09 63.2 45 71.1
MD17G1019600 Malus domestica HOM05D004896 ORTHO05D006447 1.2e-08 62.8 33 87.9
MCO13G572 Micromonas commoda HOM05D004896 ORTHO05D006447 1.6e-08 62.4 64 46.9
SMO200G0187 Selaginella moellendorffii HOM05D004896 ORTHO05D006447 2.8e-08 61.6 62 51.6
Mapoly0004s0068 Marchantia polymorpha HOM05D004896 ORTHO05D006447 3.1e-07 58.2 54 46.3
AagrBONN_evm.TU.Sc2ySwM_362.2811 Anthoceros agrestis HOM05D004896 ORTHO05D006447 5.8e-06 53.9 54 42.6


User provided reference genes

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