Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr2.366 Acer truncatum HOM05D001845 ORTHO05D026223 5.4e-52 208.4 210 100.0
Atru.chr11.202 Acer truncatum HOM05D001845 ORTHO05D026223 7.7e-22 108.2 72 80.6
Eucgr.B01944 Eucalyptus grandis HOM05D001845 ORTHO05D001878 3.4e-14 82.8 84 56.0
Thecc.05G301200 Theobroma cacao HOM05D001845 ORTHO05D001878 5.9e-14 82.0 60 70.0
TAR633G1507 Trochodendron aralioides HOM05D001845 ORTHO05D001878 1.3e-13 80.9 67 58.2
QL03p007369 Quercus lobata HOM05D001845 ORTHO05D001878 1.7e-13 80.5 100 51.0
QL03p007735 Quercus lobata HOM05D001845 ORTHO05D001878 6.5e-13 78.6 100 50.0
Haze_04183 Corylus avellana HOM05D001845 ORTHO05D001878 1.9e-12 77.0 84 54.8
Hma1.2p1_1077F.1_g254715 Hydrangea macrophylla HOM05D001845 ORTHO05D001878 1.9e-12 77.0 77 57.1
Ciclev10000263m.g Citrus clementina HOM05D001845 ORTHO05D001878 2.5e-12 76.6 53 71.7
GSVIVG01000088001 Vitis vinifera HOM05D001845 ORTHO05D001878 2.5e-12 76.6 85 52.9
RcHm_v2.0_Chr3g0455171 Rosa chinensis HOM05D001845 ORTHO05D001878 4.2e-12 75.9 82 54.9
Dinv40302 Davidia involucrata HOM05D001965 ORTHO05D002112 5.5e-12 75.5 53 69.8
Cfa006600 Carpinus fangiana HOM05D001845 ORTHO05D001878 7.2e-12 75.1 84 53.6
CiPaw.08G163900 Carya illinoinensis HOM05D001845 ORTHO05D001878 7.2e-12 75.1 80 53.8
Gohir.D11G275700 Gossypium hirsutum HOM05D001845 ORTHO05D001878 7.2e-12 75.1 56 64.3
Sabra13G0024500 Salix brachista HOM05D001845 ORTHO05D001878 7.2e-12 75.1 100 50.0
CANSAT54G3017 Cannabis sativa HOM05D002009 ORTHO05D006831 9.4e-12 74.7 82 56.1
Gorai.007G297700 Gossypium raimondii HOM05D001845 ORTHO05D001878 9.4e-12 74.7 67 56.7
CSS0024731 Camellia sinensis var. sinensis HOM05D001845 ORTHO05D001878 1.6e-11 73.9 50 70.0
Hund07077 Selenicereus undatus HOM05D001845 ORTHO05D001878 1.6e-11 73.9 80 56.2
Gohir.A11G265500 Gossypium hirsutum HOM05D001845 ORTHO05D001878 2.7e-11 73.2 67 55.2
vmacro04985 Vaccinium macrocarpon HOM05D001845 ORTHO05D001878 2.7e-11 73.2 104 46.2
Gohir.D08G226900 Gossypium hirsutum HOM05D001845 ORTHO05D001878 4.7e-11 72.4 83 51.8
Gorai.004G240800 Gossypium raimondii HOM05D001845 ORTHO05D001878 4.7e-11 72.4 83 51.8
ATR0706G175 Amborella trichopoda HOM05D001845 ORTHO05D001878 6.1e-11 72.0 56 62.5
Sed0021528 Sechium edule HOM05D001845 ORTHO05D001878 6.1e-11 72.0 85 51.8
Sopen01g042780 Solanum pennellii HOM05D001845 ORTHO05D001878 6.1e-11 72.0 104 43.3
EL10Ac4g09370 Beta vulgaris HOM05D001845 ORTHO05D001878 7.9e-11 71.6 56 62.5
PSO210G5619 Papaver somniferum HOM05D001845 ORTHO05D001878 7.9e-11 71.6 80 51.2
Cpa.g.sc48.69 Carica papaya HOM05D001845 ORTHO05D001878 1.0e-10 71.2 75 53.3
Oeu020847.1 Olea europaea HOM05D001845 ORTHO05D001878 1.0e-10 71.2 51 68.6
PSO170G3888 Papaver somniferum HOM05D001845 ORTHO05D001878 1.0e-10 71.2 80 51.2
Potri.013G022300 Populus trichocarpa HOM05D001845 ORTHO05D001878 1.0e-10 71.2 95 51.6
Nitab4.5_0022112g0010 Nicotiana tabacum HOM05D001845 ORTHO05D001878 1.4e-10 70.9 110 44.5
PGSC0003DMG400024695 Solanum tuberosum HOM05D001845 ORTHO05D001878 1.4e-10 70.9 104 43.3
Rhsim07G0183400 Rhododendron simsii HOM05D001845 ORTHO05D001878 1.8e-10 70.5 101 46.5
Solyc01g099230.3 Solanum lycopersicum HOM05D001845 ORTHO05D001878 1.8e-10 70.5 104 43.3
AUR62000810 Chenopodium quinoa HOM05D001845 ORTHO05D001878 2.3e-10 70.1 53 66.0
AUR62005158 Chenopodium quinoa HOM05D001845 ORTHO05D001878 2.3e-10 70.1 53 66.0
Cc02_g33300 Coffea canephora HOM05D001845 ORTHO05D001878 2.3e-10 70.1 53 66.0
FAN02G4081 Fragaria x ananassa HOM05D001965 ORTHO05D002112 2.3e-10 70.1 81 51.9
FAN14G1216 Fragaria x ananassa HOM05D001965 ORTHO05D002112 2.3e-10 70.1 81 51.9
ClCG02G015620 Citrullus lanatus HOM05D001845 ORTHO05D001878 3.0e-10 69.7 84 52.4
Gohir.A08G210000 Gossypium hirsutum HOM05D001845 ORTHO05D001878 3.0e-10 69.7 89 49.4
TWI56G0127 Tripterygium wilfordii HOM05D001845 ORTHO05D001878 3.0e-10 69.7 95 45.3
Nn4g25950 Nelumbo nucifera HOM05D001845 ORTHO05D001878 3.9e-10 69.3 85 45.9
Ah.04g160340 Amaranthus hybridus HOM05D001845 ORTHO05D001878 6.7e-10 68.6 56 60.7
MSTRG.27990 Avicennia marina HOM05D001845 ORTHO05D001878 8.8e-10 68.2 76 53.9
CAN.G1034.30 Capsicum annuum HOM05D001845 ORTHO05D001878 8.8e-10 68.2 101 49.5
Lalb_Chr04g0260711 Lupinus albus HOM05D001845 ORTHO05D001878 8.8e-10 68.2 53 60.4
Peaxi162Scf00037g00630 Petunia axillaris HOM05D001845 ORTHO05D001878 8.8e-10 68.2 101 45.5
CsaV3_2G006480 Cucumis sativus L. HOM05D001845 ORTHO05D001878 1.5e-09 67.4 84 52.4
FAN05G4497 Fragaria x ananassa HOM05D001965 ORTHO05D002112 2.0e-09 67.0 81 49.4
Glyma.19G234800 Glycine max HOM05D001845 ORTHO05D001878 2.6e-09 66.6 54 61.1
Phvul.006G091200 Phaseolus vulgaris HOM05D001845 ORTHO05D001878 3.3e-09 66.2 62 54.8
Prupe.6G323900 Prunus persica HOM05D001845 ORTHO05D001878 3.3e-09 66.2 54 64.8
FvH4_6g06160 Fragaria vesca HOM05D001845 ORTHO05D001878 4.4e-09 65.9 81 50.6
Lj1g0025433 Lotus japonicus HOM05D001845 ORTHO05D001878 4.4e-09 65.9 92 44.6
Os07g0404300 Oryza sativa ssp. japonica HOM05D001845 ORTHO05D001878 4.4e-09 65.9 59 59.3
Sc16g0008490 Simmondsia chinensis HOM05D001845 ORTHO05D001878 4.4e-09 65.9 81 48.1
Aa31LG2G11680 Aethionema arabicum HOM05D001845 ORTHO05D001878 5.7e-09 65.5 52 61.5
Ca_05811_v3 Cicer arietinum L. HOM05D001845 ORTHO05D001878 5.7e-09 65.5 52 59.6
Lju515C2G3 Lonicera japonica HOM05D001845 ORTHO05D001878 5.7e-09 65.5 69 56.5
BcaC04g22036 Brassica carinata HOM05D001845 ORTHO05D001878 7.4e-09 65.1 84 51.2
Glyma.03G237100 Glycine max HOM05D001845 ORTHO05D001878 7.4e-09 65.1 62 56.5
MELO3C004239.2 Cucumis melo HOM05D001845 ORTHO05D001878 9.7e-09 64.7 84 51.2
Potri.005G033000 Populus trichocarpa HOM05D001845 ORTHO05D001878 9.7e-09 64.7 90 48.9
A09p19240 Brassica napus HOM05D001845 ORTHO05D001878 1.3e-08 64.3 95 46.3
BraA09t37542Z Brassica rapa HOM05D001845 ORTHO05D001878 1.3e-08 64.3 95 46.3
TPR.G33222 Trifolium pratense HOM05D001845 ORTHO05D001878 1.7e-08 63.9 55 63.6
BcaB07g31110 Brassica carinata HOM05D001845 ORTHO05D001878 2.2e-08 63.5 83 51.8
THA.LOC104805882 Tarenaya hassleriana HOM05D001845 ORTHO05D001878 2.2e-08 63.5 48 66.7
VMungo0540G0154 Vigna mungo HOM05D001845 ORTHO05D001878 2.8e-08 63.2 95 41.1
Manes.09G167800 Manihot esculenta HOM05D002009 ORTHO05D006831 3.7e-08 62.8 39 76.9
Nitab4.5_0000137g0050 Nicotiana tabacum HOM05D001845 ORTHO05D001878 3.7e-08 62.8 38 71.1
Actinidia23645 Actinidia chinensis HOM05D001845 ORTHO05D001878 4.8e-08 62.4 39 76.9
Aqoxy2G03066 Aquilegia oxysepala HOM05D001845 ORTHO05D001878 4.8e-08 62.4 99 44.4
C09p24250 Brassica napus HOM05D001845 ORTHO05D001878 4.8e-08 62.4 84 50.0
BolC9t55342H Brassica oleracea HOM05D001845 ORTHO05D001878 4.8e-08 62.4 84 50.0
MBI18_g01959_MAGBIO Magnolia biondii HOM05D001845 ORTHO05D001878 6.3e-08 62.0 96 41.7
Psat0s2406g0200 Pisum sativum HOM05D001845 ORTHO05D001878 8.2e-08 61.6 47 68.1
HPP92_001915 Vanilla planifolia HOM05D001845 ORTHO05D001878 8.2e-08 61.6 81 45.7
ECA236G3954 Erigeron canadensis HOM05D001845 ORTHO05D001878 1.1e-07 61.2 53 58.5
Nitab4.5_0003156g0070 Nicotiana tabacum HOM05D001845 ORTHO05D001878 1.4e-07 60.8 37 70.3
Carub.0002s0804 Capsella rubella HOM05D001845 ORTHO05D001878 2.4e-07 60.1 81 48.1
CDE02G3862 Ceratophyllum demersum HOM05D001845 ORTHO05D001878 2.4e-07 60.1 52 55.8
Lju1040A2G24 Lonicera japonica HOM05D001845 ORTHO05D001878 2.4e-07 60.1 90 45.6
MD04G1203800 Malus domestica HOM05D001845 ORTHO05D001878 2.4e-07 60.1 86 47.7
Medtr7g113360 Medicago truncatula HOM05D001845 ORTHO05D001878 2.4e-07 60.1 60 53.3
SpUn0004_0260 Schrenkiella parvula HOM05D001845 ORTHO05D001878 2.4e-07 60.1 92 43.5
AL1G65690 Arabidopsis lyrata HOM05D001845 ORTHO05D001878 4.1e-07 59.3 81 45.7
AT1G55040 Arabidopsis thaliana HOM05D001845 ORTHO05D001878 4.1e-07 59.3 81 45.7
CDE08G0713 Ceratophyllum demersum HOM05D001845 ORTHO05D001878 4.1e-07 59.3 52 53.8
Dinv05827 Davidia involucrata HOM05D001845 ORTHO05D026223 4.1e-07 59.3 71 43.7
arahy.Tifrunner.gnm1.ann1.F7SKJA Arachis hypogaea HOM05D000005 ORTHO05D000012 5.3e-07 58.9 79 46.8
Sabra05G0035200 Salix brachista HOM05D001845 ORTHO05D001878 5.3e-07 58.9 78 51.3
SGA_v2.0_scaffold80G25789 Striga asiatica HOM05D001845 ORTHO05D001878 7.0e-07 58.5 37 75.7
Lj9A97T17 Lonicera japonica HOM05D001845 ORTHO05D001878 9.1e-07 58.2 108 39.8
Lj9A98T12 Lonicera japonica HOM05D001845 ORTHO05D001878 9.1e-07 58.2 108 39.8
Lj9P115T4 Lonicera japonica HOM05D001845 ORTHO05D001878 9.1e-07 58.2 108 39.8
Lju963A5T21 Lonicera japonica HOM05D001845 ORTHO05D001878 9.1e-07 58.2 108 39.8
CARHR289670 Cardamine hirsuta HOM05D001845 ORTHO05D001878 1.2e-06 57.8 92 41.3
Thhalv10023272m.g Eutrema salsugineum HOM05D001845 ORTHO05D001878 2.0e-06 57.0 93 44.1
MD12G1217600 Malus domestica HOM05D001845 ORTHO05D001878 2.0e-06 57.0 85 45.9
Zm00001eb094690 Zea mays HOM05D001845 ORTHO05D001878 2.0e-06 57.0 79 46.8
SHI43581 Sapria himalayana HOM05D001845 ORTHO05D001878 2.6e-06 56.6 75 46.7
SEGI_38156 Sequoiadendron giganteum HOM05D001845 ORTHO05D001878 5.9e-06 55.5 62 50.0


User provided reference genes

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