Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr2.3597 Acer truncatum HOM05D007364 ORTHO05D009275 5.3e-47 190.7 95 100.0
Atru.chr1.2614 Acer truncatum HOM05D007364 ORTHO05D009275 2.8e-32 141.7 76 90.8
THA.LOC104812333 Tarenaya hassleriana HOM05D007364 ORTHO05D009275 5.7e-25 117.5 75 70.7
AT1G16790 Arabidopsis thaliana HOM05D007364 ORTHO05D009275 4.1e-23 111.3 68 73.5
BraA08t35051Z Brassica rapa HOM05D000163 ORTHO05D000219 2.0e-22 109.0 67 71.6
Thhalv10009015m.g Eutrema salsugineum HOM05D007364 ORTHO05D009275 2.0e-22 109.0 67 70.1
BcaC07g38817 Brassica carinata HOM05D007364 ORTHO05D009275 2.7e-22 108.6 67 70.1
C08p17550 Brassica napus HOM05D000163 ORTHO05D009228 2.7e-22 108.6 67 71.6
Duzib235G1177 Durio zibethinus HOM05D007364 ORTHO05D009275 2.7e-22 108.6 75 70.7
AL1G28960 Arabidopsis lyrata HOM05D007364 ORTHO05D009275 5.9e-22 107.5 67 70.1
A06p12720 Brassica napus HOM05D007364 ORTHO05D009275 7.7e-22 107.1 67 68.7
A08p31280 Brassica napus HOM05D000163 ORTHO05D000219 7.7e-22 107.1 67 68.7
BraA06t24432Z Brassica rapa HOM05D007364 ORTHO05D009275 7.7e-22 107.1 67 68.7
Sp1g14930 Schrenkiella parvula HOM05D007364 ORTHO05D009275 1.3e-21 106.3 67 68.7
Ciclev10013953m.g Citrus clementina HOM05D007364 ORTHO05D009275 1.7e-21 105.9 73 68.5
Thecc.06G054700 Theobroma cacao HOM05D007364 ORTHO05D009275 2.2e-21 105.5 71 70.4
CARHR017250 Cardamine hirsuta HOM05D007364 ORTHO05D009275 2.9e-21 105.1 68 66.2
C05p15020 Brassica napus HOM05D007364 ORTHO05D009275 3.8e-21 104.8 67 67.2
BolC5t30217H Brassica oleracea HOM05D007364 ORTHO05D009275 3.8e-21 104.8 67 67.2
BcaB03g13030 Brassica carinata HOM05D007364 ORTHO05D009275 5.0e-21 104.4 67 67.2
COL.COLO4_38285 Corchorus olitorius HOM05D007364 ORTHO05D009275 8.5e-21 103.6 72 66.7
Manes.14G008700 Manihot esculenta HOM05D007364 ORTHO05D009275 8.5e-21 103.6 70 65.7
Aa31LG7G1240 Aethionema arabicum HOM05D007364 ORTHO05D009275 1.1e-20 103.2 76 63.2
TWI63G0101 Tripterygium wilfordii HOM05D007364 ORTHO05D009275 1.1e-20 103.2 74 66.2
Carub.0001s1652 Capsella rubella HOM05D007364 ORTHO05D009275 1.5e-20 102.8 67 65.7
Gohir.A05G115400 Gossypium hirsutum HOM05D007364 ORTHO05D009275 3.2e-20 101.7 72 68.1
Gohir.D05G115800 Gossypium hirsutum HOM05D007364 ORTHO05D009275 3.2e-20 101.7 72 68.1
Gorai.009G119800 Gossypium raimondii HOM05D007364 ORTHO05D009275 3.2e-20 101.7 72 68.1
TWI38G2254 Tripterygium wilfordii HOM05D007364 ORTHO05D009275 4.2e-20 101.3 74 63.5
Potri.010G254100 Populus trichocarpa HOM05D007364 ORTHO05D009275 9.4e-20 100.1 73 61.6
Haze_16200 Corylus avellana HOM05D007364 ORTHO05D009275 4.7e-19 97.8 70 61.4
Cfa003431 Carpinus fangiana HOM05D007364 ORTHO05D009275 3.0e-18 95.1 70 61.4
Psat7g058640 Pisum sativum HOM05D007364 ORTHO05D009275 8.8e-18 93.6 68 61.8
Lj4g0012611 Lotus japonicus HOM05D007364 ORTHO05D009275 2.6e-17 92.0 71 60.6
Ca_17791_v3 Cicer arietinum L. HOM05D007364 ORTHO05D009275 3.4e-17 91.7 68 63.2
Ca_29552_v3 Cicer arietinum L. HOM05D007364 ORTHO05D009275 3.4e-17 91.7 68 63.2
ClCG07G014710 Citrullus lanatus HOM05D007364 ORTHO05D009275 4.4e-17 91.3 72 59.7
TAR625G0136 Trochodendron aralioides HOM05D007364 ORTHO05D009275 4.4e-17 91.3 67 59.7
arahy.Tifrunner.gnm1.ann1.TFQ65X Arachis hypogaea HOM05D007364 ORTHO05D009275 9.8e-17 90.1 68 58.8
TPR.G6288 Trifolium pratense HOM05D007364 ORTHO05D009275 9.8e-17 90.1 68 58.8
FvH4_6g36820 Fragaria vesca HOM05D007364 ORTHO05D009275 1.7e-16 89.4 65 60.0
FAN02G1908 Fragaria x ananassa HOM05D007364 ORTHO05D009275 1.7e-16 89.4 65 60.0
FAN05G2474 Fragaria x ananassa HOM05D007364 ORTHO05D009275 1.7e-16 89.4 65 60.0
FAN14G5026 Fragaria x ananassa HOM05D007364 ORTHO05D009275 1.7e-16 89.4 65 60.0
Glyma.08G130400 Glycine max HOM05D007364 ORTHO05D009275 1.7e-16 89.4 71 54.9
arahy.Tifrunner.gnm1.ann1.A7U39C Arachis hypogaea HOM05D007364 ORTHO05D009275 2.8e-16 88.6 68 57.4
Prupe.3G024300 Prunus persica HOM05D007364 ORTHO05D009275 2.8e-16 88.6 68 58.8
MELO3C010416.2 Cucumis melo HOM05D007364 ORTHO05D009275 3.7e-16 88.2 71 56.3
Lalb_Chr07g0185511 Lupinus albus HOM05D007364 ORTHO05D009275 3.7e-16 88.2 68 55.9
QL05p088447 Quercus lobata HOM05D007364 ORTHO05D009275 3.7e-16 88.2 63 58.7
MD09G1166600 Malus domestica HOM05D007364 ORTHO05D009275 6.3e-16 87.4 68 55.9
BolC8t49381H Brassica oleracea HOM05D000163 ORTHO05D000219 8.3e-16 87.0 54 72.2
Glyma.05G173100 Glycine max HOM05D007364 ORTHO05D009275 1.1e-15 86.7 71 53.5
MBI16_g18204_MAGBIO Magnolia biondii HOM05D007364 ORTHO05D009275 1.8e-15 85.9 68 54.4
TAR636G2112 Trochodendron aralioides HOM05D007364 ORTHO05D009275 1.8e-15 85.9 67 58.2
RcHm_v2.0_Chr2g0149211 Rosa chinensis HOM05D007364 ORTHO05D009275 7.0e-15 84.0 65 56.9
VMungo0251G1224 Vigna mungo HOM05D007364 ORTHO05D009275 7.0e-15 84.0 71 54.9
Eucgr.J03185 Eucalyptus grandis HOM05D007364 ORTHO05D009275 1.6e-14 82.8 64 56.2
BcaB02g06675 Brassica carinata HOM05D007364 ORTHO05D009275 2.0e-14 82.4 55 67.3
Aqoxy2G03840 Aquilegia oxysepala HOM05D007364 ORTHO05D009275 3.5e-14 81.6 63 55.6
Aqoxy5G03758 Aquilegia oxysepala HOM05D007364 ORTHO05D009275 3.5e-14 81.6 63 55.6
Phvul.002G258200 Phaseolus vulgaris HOM05D007364 ORTHO05D009275 3.5e-14 81.6 71 52.1
THA.LOC104808105 Tarenaya hassleriana HOM05D007364 ORTHO05D009275 3.5e-14 81.6 65 56.9
CANSAT78G1269 Cannabis sativa HOM05D007364 ORTHO05D009275 5.0e-13 77.8 71 50.7
Ah.15g094280 Amaranthus hybridus HOM05D007364 ORTHO05D009275 1.1e-12 76.6 66 47.0
AUR62001324 Chenopodium quinoa HOM05D007364 ORTHO05D009275 1.5e-12 76.3 68 45.6
FAN09G0058 Fragaria x ananassa HOM05D007364 ORTHO05D009275 5.5e-12 74.3 55 60.0
DCAR_001424 Daucus carota HOM05D007364 ORTHO05D009275 9.5e-12 73.6 59 52.5
PGR031G1732 Punica granatum HOM05D007364 ORTHO05D009275 9.5e-12 73.6 65 50.8
Sc15g0001160 Simmondsia chinensis HOM05D000912 ORTHO05D008392 1.2e-11 73.2 61 55.7
Hma1.2p1_0191F.1_g083440 Hydrangea macrophylla HOM05D007364 ORTHO05D009275 1.6e-11 72.8 57 54.4
Hma1.2p1_3076F.1_g332395 Hydrangea macrophylla HOM05D007364 ORTHO05D009275 1.6e-11 72.8 57 54.4
AUR62025707 Chenopodium quinoa HOM05D007364 ORTHO05D009275 2.8e-11 72.0 68 41.2
EL10Ac7g18129 Beta vulgaris HOM05D007364 ORTHO05D009275 2.3e-10 68.9 64 43.8
Cc09_g07400 Coffea canephora HOM05D007364 ORTHO05D009275 3.0e-10 68.6 69 49.3
PSO063G5199 Papaver somniferum HOM05D007364 ORTHO05D009275 4.0e-10 68.2 63 52.4
PSO170G0377 Papaver somniferum HOM05D007364 ORTHO05D009275 4.0e-10 68.2 63 52.4
Actinidia21894 Actinidia chinensis HOM05D007364 ORTHO05D009275 6.8e-10 67.4 72 47.2
Sed0001602 Sechium edule HOM05D007364 ORTHO05D009275 6.8e-10 67.4 54 57.4
Nitab4.5_0011805g0010 Nicotiana tabacum HOM05D007364 ORTHO05D009275 8.8e-10 67.0 73 46.6
Peaxi162Scf00062g00099 Petunia axillaris HOM05D007364 ORTHO05D009275 8.8e-10 67.0 66 48.5
Solyc12g099960.1 Solanum lycopersicum HOM05D007364 ORTHO05D009275 2.0e-09 65.9 66 47.0
Sopen12g034580 Solanum pennellii HOM05D007364 ORTHO05D009275 2.6e-09 65.5 66 47.0
PGSC0003DMG400004654 Solanum tuberosum HOM05D007364 ORTHO05D009275 2.6e-09 65.5 66 45.5
AUR62040375 Chenopodium quinoa HOM05D007364 ORTHO05D009275 7.5e-09 63.9 62 40.3
AUR62015398 Chenopodium quinoa HOM05D007364 ORTHO05D009275 9.8e-09 63.5 62 40.3
Lj9P543T41 Lonicera japonica HOM05D007364 ORTHO05D009275 2.8e-08 62.0 64 48.4
HPP92_017099 Vanilla planifolia HOM05D007364 ORTHO05D009275 2.8e-08 62.0 72 40.3
HPP92_017109 Vanilla planifolia HOM05D007364 ORTHO05D009275 2.8e-08 62.0 78 38.5
BcaC05g25538 Brassica carinata HOM05D007364 ORTHO05D009275 2.4e-07 58.9 41 68.3
Lsat_1_v5_gn_4_106261 Lactuca sativa HOM05D007364 ORTHO05D009275 5.4e-07 57.8 75 41.3
CAN.G484.12 Capsicum annuum HOM05D007364 ORTHO05D009275 7.0e-07 57.4 66 42.4
Actinidia38815 Actinidia chinensis HOM05D007364 ORTHO05D009275 5.9e-06 54.3 68 41.2


User provided reference genes

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