Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr2.3453 Acer truncatum HOM05D007013 ORTHO05D008999 1.4e-229 799.3 396 100.0
Ciclev10008561m.g Citrus clementina HOM05D007013 ORTHO05D008999 1.9e-170 602.8 392 75.8
Cfa020325 Carpinus fangiana HOM05D007013 ORTHO05D008999 2.4e-157 559.3 393 69.0
Duzib213G0396 Durio zibethinus HOM05D007013 ORTHO05D008999 2.9e-155 552.4 388 69.3
GSVIVG01037670001 Vitis vinifera HOM05D007013 ORTHO05D008999 3.8e-155 552.0 398 67.1
QL08p009594 Quercus lobata HOM05D007013 ORTHO05D008999 7.1e-154 547.7 394 68.0
MD11G1215400 Malus domestica HOM05D007013 ORTHO05D008999 3.9e-152 542.0 389 66.8
Thecc.07G033700 Theobroma cacao HOM05D007013 ORTHO05D008999 9.6e-151 537.3 394 67.5
CiPaw.12G131100 Carya illinoinensis HOM05D007013 ORTHO05D008999 1.3e-150 537.0 386 68.1
TWI38G0247 Tripterygium wilfordii HOM05D007013 ORTHO05D008999 6.9e-149 531.2 388 66.5
Gohir.D01G068100 Gossypium hirsutum HOM05D007013 ORTHO05D008999 4.5e-148 528.5 388 67.3
CANSAT11G0669 Cannabis sativa HOM05D007013 ORTHO05D008999 7.6e-148 527.7 388 68.0
FvH4_3g19730 Fragaria vesca HOM05D007013 ORTHO05D008999 7.6e-148 527.7 386 65.3
Gorai.002G090100 Gossypium raimondii HOM05D007013 ORTHO05D008999 7.6e-148 527.7 388 67.0
Potri.001G418800 Populus trichocarpa HOM05D007013 ORTHO05D008999 2.9e-147 525.8 388 67.5
RcHm_v2.0_Chr5g0033071 Rosa chinensis HOM05D007013 ORTHO05D008999 1.6e-145 520.0 388 63.7
Hma1.2p1_0036F.1_g023520 Hydrangea macrophylla HOM05D007013 ORTHO05D008999 1.0e-144 517.3 392 66.3
TAR624G0955 Trochodendron aralioides HOM05D007013 ORTHO05D008999 8.7e-144 514.2 394 65.7
Eucgr.F03478 Eucalyptus grandis HOM05D007013 ORTHO05D008999 2.8e-142 509.2 403 64.8
vmacro02226 Vaccinium macrocarpon HOM05D007013 ORTHO05D008999 3.7e-142 508.8 391 63.4
Haze_09698 Corylus avellana HOM05D007013 ORTHO05D008999 3.8e-139 498.8 335 69.9
TPR.G33766 Trifolium pratense HOM05D007013 ORTHO05D008999 3.8e-139 498.8 389 65.0
THA.LOC104825406 Tarenaya hassleriana HOM05D007013 ORTHO05D008999 1.4e-138 496.9 388 62.9
Actinidia05088 Actinidia chinensis HOM05D007013 ORTHO05D008999 1.9e-138 496.5 398 62.8
Medtr3g052590 Medicago truncatula HOM05D007013 ORTHO05D008999 7.2e-138 494.6 389 63.0
CSS0027260 Camellia sinensis var. sinensis HOM05D007013 ORTHO05D008999 1.2e-137 493.8 392 63.3
Glyma.08G318300 Glycine max HOM05D007013 ORTHO05D008999 1.0e-136 490.7 386 63.2
COL.COLO4_09677 Corchorus olitorius HOM05D007013 ORTHO05D008999 1.5e-135 486.9 388 64.4
FAN16G1225 Fragaria x ananassa HOM05D007013 ORTHO05D008999 2.5e-135 486.1 386 62.4
Lj6g0002864 Lotus japonicus HOM05D007013 ORTHO05D008999 3.3e-135 485.7 388 62.6
arahy.Tifrunner.gnm1.ann1.YL2AFE Arachis hypogaea HOM05D007013 ORTHO05D008999 9.7e-135 484.2 393 61.6
Psat5g177160 Pisum sativum HOM05D007013 ORTHO05D008999 9.7e-135 484.2 386 62.4
VMungo0540G0725 Vigna mungo HOM05D007013 ORTHO05D008999 9.7e-135 484.2 386 62.7
Cpa.g.sc12.289 Carica papaya HOM05D007013 ORTHO05D008999 1.3e-134 483.8 394 61.4
Lalb_Chr18g0049881 Lupinus albus HOM05D007013 ORTHO05D008999 4.8e-134 481.9 385 62.3
BraA02t07867Z Brassica rapa HOM05D007013 ORTHO05D008999 2.4e-133 479.6 389 61.2
PSO675G8214 Papaver somniferum HOM05D007013 ORTHO05D008999 1.2e-132 477.2 400 59.2
CsaV3_7G021910 Cucumis sativus L. HOM05D007013 ORTHO05D008999 3.4e-132 475.7 394 59.9
Oeu034036.2 Olea europaea HOM05D007013 ORTHO05D008999 4.5e-132 475.3 390 59.5
MELO3C013155.2 Cucumis melo HOM05D007013 ORTHO05D008999 1.3e-131 473.8 394 59.9
Thhalv10020871m.g Eutrema salsugineum HOM05D007013 ORTHO05D008999 1.7e-131 473.4 389 60.9
Sp2g09120 Schrenkiella parvula HOM05D007013 ORTHO05D008999 1.1e-130 470.7 388 61.1
PSO541G1885 Papaver somniferum HOM05D007013 ORTHO05D008999 1.4e-130 470.3 398 58.3
Aa31LG8G7290 Aethionema arabicum HOM05D007013 ORTHO05D008999 4.2e-130 468.8 389 60.7
C02p44890 Brassica napus HOM05D007013 ORTHO05D008999 5.5e-130 468.4 389 60.4
Carub.0003s2044 Capsella rubella HOM05D007013 ORTHO05D008999 1.6e-129 466.8 389 60.2
BcaB07g30535 Brassica carinata HOM05D007013 ORTHO05D008999 2.1e-129 466.5 392 59.7
AL3G34260 Arabidopsis lyrata HOM05D007013 ORTHO05D008999 6.1e-129 464.9 388 61.3
BolC2t10525H Brassica oleracea HOM05D007013 ORTHO05D008999 6.1e-129 464.9 384 60.2
CAN.G337.80 Capsicum annuum HOM05D007013 ORTHO05D008999 6.1e-129 464.9 392 59.2
Nn1g07163 Nelumbo nucifera HOM05D007013 ORTHO05D008999 7.9e-129 464.5 363 64.5
A02p28310 Brassica napus HOM05D007013 ORTHO05D008999 2.0e-127 459.9 367 61.6
Cc05_g13940 Coffea canephora HOM05D007013 ORTHO05D008999 2.6e-127 459.5 394 59.4
EL10Ac4g07781 Beta vulgaris HOM05D007013 ORTHO05D008999 5.7e-127 458.4 388 59.3
Aqoxy1G02096 Aquilegia oxysepala HOM05D007013 ORTHO05D008999 2.8e-126 456.1 390 59.2
Hund01977 Selenicereus undatus HOM05D007013 ORTHO05D008999 2.8e-126 456.1 388 57.5
Prupe.4G215900 Prunus persica HOM05D007013 ORTHO05D008999 8.2e-126 454.5 387 59.7
ECA240G2937 Erigeron canadensis HOM05D007013 ORTHO05D008999 2.4e-125 453.0 390 59.5
ClCG09G010880 Citrullus lanatus HOM05D007013 ORTHO05D008999 5.3e-125 451.8 394 57.4
MSTRG.14440 Avicennia marina HOM05D007013 ORTHO05D008999 5.9e-124 448.4 389 57.8
Nitab4.5_0005590g0010 Nicotiana tabacum HOM05D007013 ORTHO05D008999 1.0e-123 447.6 392 58.9
Sabra16G0284300 Salix brachista HOM05D007013 ORTHO05D008999 1.0e-123 447.6 389 59.4
HanXRQChr03g0076401 Helianthus annuus HOM05D007013 ORTHO05D008999 1.7e-123 446.8 389 57.8
Nitab4.5_0002287g0070 Nicotiana tabacum HOM05D007013 ORTHO05D008999 1.7e-123 446.8 393 58.5
Manes.15G070387 Manihot esculenta HOM05D007013 ORTHO05D008999 8.5e-123 444.5 317 68.5
Sc16g0005930 Simmondsia chinensis HOM05D007013 ORTHO05D008999 8.5e-123 444.5 385 57.7
Ca_14746_v3 Cicer arietinum L. HOM05D007013 ORTHO05D008999 1.2e-121 440.7 329 64.7
Solyc07g064710.3 Solanum lycopersicum HOM05D007013 ORTHO05D008999 1.2e-121 440.7 391 57.3
Peaxi162Scf00235g00319 Petunia axillaris HOM05D007013 ORTHO05D008999 4.7e-121 438.7 405 54.6
AUR62020414 Chenopodium quinoa HOM05D007013 ORTHO05D008999 6.7e-120 434.9 354 59.3
FAN11G2199 Fragaria x ananassa HOM05D007013 ORTHO05D008999 6.7e-120 434.9 386 56.7
Ah.06g182900 Amaranthus hybridus HOM05D007013 ORTHO05D008999 2.8e-118 429.5 388 55.7
DCAR_012723 Daucus carota HOM05D007013 ORTHO05D008999 1.1e-117 427.6 392 55.1
Sed0023076 Sechium edule HOM05D007013 ORTHO05D008999 3.1e-117 426.0 344 61.3
BcaC03g16648 Brassica carinata HOM05D007013 ORTHO05D008999 9.1e-117 424.5 345 60.9
Migut.H01815 Erythranthe guttata HOM05D007013 ORTHO05D008999 1.2e-116 424.1 389 54.8
Hma1.2p1_0036F.1_g023530 Hydrangea macrophylla HOM05D007013 ORTHO05D008999 1.7e-115 420.2 322 66.1
unitig_578.g16279 Utricularia gibba HOM05D001434 ORTHO05D008999 3.2e-114 416.0 382 55.5
arahy.Tifrunner.gnm1.ann1.PYQ1JD Arachis hypogaea HOM05D007013 ORTHO05D008999 7.5e-111 404.8 308 63.6
Sopen07g032910 Solanum pennellii HOM05D007013 ORTHO05D008999 2.2e-110 403.3 350 58.9
HPP92_012407 Vanilla planifolia HOM05D007013 ORTHO05D008999 2.8e-110 402.9 390 51.5
Lsat_1_v5_gn_9_93121 Lactuca sativa HOM05D007013 ORTHO05D008999 1.1e-106 391.0 394 54.3
SGA_v2.0_scaffold363G49936 Striga asiatica HOM05D007013 ORTHO05D008999 2.3e-104 383.3 421 48.7
ATR0794G085 Amborella trichopoda HOM05D007013 ORTHO05D008999 5.4e-101 372.1 315 59.0
Phvul.006G045700 Phaseolus vulgaris HOM05D007013 ORTHO05D008999 2.3e-99 366.7 297 62.3
Dinv22254 Davidia involucrata HOM05D007013 ORTHO05D008999 1.9e-98 363.6 266 68.4
AUR62015801 Chenopodium quinoa HOM05D007013 ORTHO05D008999 1.5e-95 354.0 289 59.5
AT3G20480 Arabidopsis thaliana HOM05D007013 ORTHO05D008999 4.4e-95 352.4 295 60.3
Lj1A874G27 Lonicera japonica HOM05D007013 ORTHO05D008999 2.8e-89 333.2 295 57.6
Gohir.A01G080900 Gossypium hirsutum HOM05D007013 ORTHO05D008999 3.4e-87 326.2 241 66.4
PGSC0003DMG400022313 Solanum tuberosum HOM05D007013 ORTHO05D008999 2.9e-86 323.2 284 56.0
Rhsim06G0218600 Rhododendron simsii HOM05D007013 ORTHO05D008999 4.1e-85 319.3 273 58.2
Mapoly0002s0307 Marchantia polymorpha HOM05D007013 ORTHO05D008999 2.5e-82 310.1 392 44.9
SMO367G1261 Selaginella moellendorffii HOM05D007013 ORTHO05D008999 4.9e-78 295.8 372 44.4
CARHR096240 Cardamine hirsuta HOM05D007013 ORTHO05D008999 2.8e-65 253.4 211 59.7
SEGI_14581 Sequoiadendron giganteum HOM05D007013 ORTHO05D008999 8.4e-62 241.9 234 53.8
Zm00001eb030850 Zea mays HOM05D007013 ORTHO05D008999 5.6e-58 229.2 233 55.4
Glyma.18G095300 Glycine max HOM05D007013 ORTHO05D008999 2.4e-56 223.8 214 53.7
Glyma.18G095150 Glycine max HOM05D007013 ORTHO05D008999 4.6e-52 209.5 278 44.2
Pp3c19_1630 Physcomitrium patens HOM05D007013 ORTHO05D008999 1.9e-50 204.1 395 34.4
AagrBONN_evm.TU.Sc2ySwM_228.2947 Anthoceros agrestis HOM05D000001 ORTHO05D000003 2.2e-46 190.7 283 41.0
CBR_g39764 Chara braunii HOM05D007013 ORTHO05D008999 1.5e-39 167.9 344 32.8
Os07g0102000 Oryza sativa ssp. japonica HOM05D007013 ORTHO05D008999 1.5e-39 167.9 197 44.7
CDE05G3055 Ceratophyllum demersum HOM05D007013 ORTHO05D008999 8.4e-38 162.2 236 41.9
FAN16G0901 Fragaria x ananassa HOM05D007013 ORTHO05D008999 2.1e-33 147.5 99 73.7
TWI34G0353 Tripterygium wilfordii HOM05D007013 ORTHO05D008999 6.3e-25 119.4 134 44.0
RcHm_v2.0_Chr4g0424981 Rosa chinensis HOM05D007013 ORTHO05D008999 2.9e-22 110.5 92 54.3
Medtr0152s0030 Medicago truncatula HOM05D007013 ORTHO05D008999 7.2e-13 79.3 101 42.6
Zm00001eb030810 Zea mays HOM05D007013 ORTHO05D008999 4.7e-12 76.6 93 43.0
SEGI_13858 Sequoiadendron giganteum HOM05D007013 ORTHO05D008999 6.1e-12 76.3 89 43.8
Rhsim06G0218700 Rhododendron simsii HOM05D007013 ORTHO05D008999 1.4e-11 75.1 50 62.0
Medtr0152s0050 Medicago truncatula HOM05D007013 ORTHO05D008999 2.2e-06 57.8 70 41.4


User provided reference genes

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