Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr2.3399 Acer truncatum HOM05D003074 ORTHO05D002434 1.0e-70 270.0 138 100.0
Atru.chr2.3400 Acer truncatum HOM05D003074 ORTHO05D002434 1.2e-44 183.3 145 75.2
Haze_09674 Corylus avellana HOM05D003074 ORTHO05D002434 2.9e-25 119.0 142 54.9
Thecc.07G037400 Theobroma cacao HOM05D003074 ORTHO05D002434 1.8e-24 116.3 148 51.4
Cfa020350 Carpinus fangiana HOM05D003074 ORTHO05D002434 2.0e-23 112.8 139 51.8
CiPaw.11G189000 Carya illinoinensis HOM05D003074 ORTHO05D002434 2.0e-23 112.8 143 52.4
Duzib268G1655 Durio zibethinus HOM05D003074 ORTHO05D002434 2.7e-23 112.5 140 53.6
COL.COLO4_09658 Corchorus olitorius HOM05D003074 ORTHO05D002434 4.6e-23 111.7 151 47.7
CiPaw.12G129500 Carya illinoinensis HOM05D003074 ORTHO05D002434 5.9e-23 111.3 142 53.5
Gohir.D05G369300 Gossypium hirsutum HOM05D003074 ORTHO05D002434 7.8e-23 110.9 139 53.2
Gorai.009G438000 Gossypium raimondii HOM05D003074 ORTHO05D002434 7.8e-23 110.9 139 53.2
QL08p010341 Quercus lobata HOM05D003074 ORTHO05D002434 7.8e-23 110.9 144 51.4
Dinv40751 Davidia involucrata HOM05D003074 ORTHO05D002434 1.0e-22 110.5 142 51.4
Gohir.A04G016900 Gossypium hirsutum HOM05D003074 ORTHO05D002434 1.0e-22 110.5 139 51.8
Duzib213G0915 Durio zibethinus HOM05D003074 ORTHO05D002434 2.3e-22 109.4 143 50.3
Prupe.4G212400 Prunus persica HOM05D003074 ORTHO05D002434 1.9e-21 106.3 143 47.6
TAR626G1667 Trochodendron aralioides HOM05D003074 ORTHO05D002434 2.5e-21 105.9 140 52.9
TWI38G1886 Tripterygium wilfordii HOM05D003074 ORTHO05D002434 9.5e-21 104.0 138 49.3
Ciclev10009680m.g Citrus clementina HOM05D003074 ORTHO05D002434 4.7e-20 101.7 147 51.0
FvH4_3g22640 Fragaria vesca HOM05D003074 ORTHO05D002434 6.1e-20 101.3 154 47.4
FAN11G2929 Fragaria x ananassa HOM05D003074 ORTHO05D002434 1.0e-19 100.5 154 47.4
FAN16G0504 Fragaria x ananassa HOM05D003074 ORTHO05D002434 4.0e-19 98.6 154 46.8
FAN25G2410 Fragaria x ananassa HOM05D003074 ORTHO05D002434 4.0e-19 98.6 154 46.8
MD11G1218800 Malus domestica HOM05D003074 ORTHO05D002434 1.2e-18 97.1 134 50.0
TAR624G1270 Trochodendron aralioides HOM05D003074 ORTHO05D002434 1.2e-18 97.1 142 51.4
Hma1.2p1_1091F.1_g255850 Hydrangea macrophylla HOM05D003074 ORTHO05D002434 2.0e-18 96.3 62 79.0
Gorai.002G088300 Gossypium raimondii HOM05D003074 ORTHO05D002434 3.4e-18 95.5 135 47.4
FAN21G2959 Fragaria x ananassa HOM05D003074 ORTHO05D002434 4.4e-18 95.1 155 45.8
Hma1.2p1_1162F.1_g262580 Hydrangea macrophylla HOM05D003074 ORTHO05D002434 5.8e-18 94.7 62 77.4
Haze_06793 Corylus avellana HOM05D003074 ORTHO05D002434 2.2e-17 92.8 141 47.5
Cpa.g.sc97.7 Carica papaya HOM05D003074 ORTHO05D002434 3.7e-17 92.0 136 47.8
Cfa000232 Carpinus fangiana HOM05D003074 ORTHO05D002434 3.7e-17 92.0 146 43.8
Dinv22264 Davidia involucrata HOM05D003074 ORTHO05D002434 3.7e-17 92.0 128 50.0
Manes.03G129100 Manihot esculenta HOM05D003074 ORTHO05D002434 8.3e-17 90.9 144 47.2
Gohir.A01G079300 Gossypium hirsutum HOM05D003074 ORTHO05D002434 1.9e-16 89.7 135 45.2
PGSC0003DMG400001089 Solanum tuberosum HOM05D003074 ORTHO05D002434 1.9e-16 89.7 138 43.5
Aqoxy1G02174 Aquilegia oxysepala HOM05D003074 ORTHO05D002434 2.4e-16 89.4 141 43.3
THA.LOC104817856 Tarenaya hassleriana HOM05D003074 ORTHO05D002434 2.4e-16 89.4 138 45.7
RcHm_v2.0_Chr5g0039411 Rosa chinensis HOM05D003074 ORTHO05D002434 7.0e-16 87.8 144 43.8
CiPaw.09G091000 Carya illinoinensis HOM05D003074 ORTHO05D002434 1.2e-15 87.0 148 41.9
RhsimUnG0250800 Rhododendron simsii HOM05D003074 ORTHO05D002434 1.6e-15 86.7 127 42.5
Aqoxy1G02178 Aquilegia oxysepala HOM05D003074 ORTHO05D002434 2.7e-15 85.9 137 44.5
Hma1.2p1_1222F.1_g268140 Hydrangea macrophylla HOM05D003074 ORTHO05D002434 3.5e-15 85.5 142 43.7
Lsat_1_v5_gn_9_93960 Lactuca sativa HOM05D003074 ORTHO05D002434 3.5e-15 85.5 98 51.0
Nn5g29371 Nelumbo nucifera HOM05D003074 ORTHO05D002434 3.5e-15 85.5 137 44.5
Migut.M01767 Erythranthe guttata HOM05D003074 ORTHO05D002434 4.6e-15 85.1 135 43.0
Ca_01715_v3 Cicer arietinum L. HOM05D003074 ORTHO05D002434 1.3e-14 83.6 138 42.0
Ca_30684_v3 Cicer arietinum L. HOM05D003074 ORTHO05D002434 1.3e-14 83.6 138 42.0
Medtr3g051530 Medicago truncatula HOM05D003074 ORTHO05D002434 1.7e-14 83.2 85 55.3
Gohir.D01G066350 Gossypium hirsutum HOM05D003074 ORTHO05D002434 2.3e-14 82.8 87 52.9
Hma1.2p1_0673F.1_g201330 Hydrangea macrophylla HOM05D003074 ORTHO05D002434 2.3e-14 82.8 138 42.8
Medtr3g051610 Medicago truncatula HOM05D003074 ORTHO05D002434 2.3e-14 82.8 90 56.7
Nn1g03544 Nelumbo nucifera HOM05D003074 ORTHO05D002434 2.3e-14 82.8 136 41.9
EL10Ac4g07810 Beta vulgaris HOM05D003074 ORTHO05D002434 3.9e-14 82.0 138 41.3
Eucgr.F03465 Eucalyptus grandis HOM05D003074 ORTHO05D002434 5.0e-14 81.6 144 40.3
TPR.G16595 Trifolium pratense HOM05D003074 ORTHO05D002434 5.0e-14 81.6 100 49.0
ClCG05G014310 Citrullus lanatus HOM05D003074 ORTHO05D002434 6.6e-14 81.3 65 64.6
Manes.15G072100 Manihot esculenta HOM05D003074 ORTHO05D002434 6.6e-14 81.3 136 44.1
Medtr3g051510 Medicago truncatula HOM05D003074 ORTHO05D002434 6.6e-14 81.3 80 56.2
Actinidia35342 Actinidia chinensis HOM05D003074 ORTHO05D002434 8.6e-14 80.9 58 70.7
ECA240G4169 Erigeron canadensis HOM05D003074 ORTHO05D002434 8.6e-14 80.9 80 58.8
Oeu007582.1 Olea europaea HOM05D003074 ORTHO05D002434 8.6e-14 80.9 135 42.2
Medtr3g051570 Medicago truncatula HOM05D003074 ORTHO05D002434 1.1e-13 80.5 100 48.0
Sabra11G0125400 Salix brachista HOM05D003074 ORTHO05D002434 1.5e-13 80.1 63 69.8
QL05p073377 Quercus lobata HOM05D003074 ORTHO05D002434 2.5e-13 79.3 147 44.2
Peaxi162Scf01097g00039 Petunia axillaris HOM05D003074 ORTHO05D002434 4.3e-13 78.6 136 39.0
MSTRG.6917 Avicennia marina HOM05D003074 ORTHO05D002434 5.6e-13 78.2 135 41.5
CSS0019776 Camellia sinensis var. sinensis HOM05D003074 ORTHO05D002434 5.6e-13 78.2 138 45.7
Oeu042936.1 Olea europaea HOM05D003074 ORTHO05D002434 5.6e-13 78.2 135 42.2
Sed0007461 Sechium edule HOM05D003074 ORTHO05D002434 9.5e-13 77.4 139 40.3
PGSC0003DMG400032292 Solanum tuberosum HOM05D003074 ORTHO05D002434 9.5e-13 77.4 58 69.0
Glyma.08G316000 Glycine max HOM05D003074 ORTHO05D002434 1.6e-12 76.6 91 51.6
Manes.16G007700 Manihot esculenta HOM05D003074 ORTHO05D002434 2.1e-12 76.3 143 43.4
PSO541G1700 Papaver somniferum HOM05D003074 ORTHO05D002434 2.1e-12 76.3 141 39.0
Potri.011G139400 Populus trichocarpa HOM05D003074 ORTHO05D002434 2.1e-12 76.3 112 47.3
PGSC0003DMG400031876 Solanum tuberosum HOM05D003074 ORTHO05D002434 2.1e-12 76.3 58 69.0
MBI02_g07159_MAGBIO Magnolia biondii HOM05D003074 ORTHO05D002434 2.8e-12 75.9 136 38.2
PSO675G3145 Papaver somniferum HOM05D003074 ORTHO05D002434 4.7e-12 75.1 141 39.0
Phvul.006G043100 Phaseolus vulgaris HOM05D003074 ORTHO05D002434 4.7e-12 75.1 89 48.3
PGSC0003DMG400029820 Solanum tuberosum HOM05D003074 ORTHO05D002434 4.7e-12 75.1 78 55.1
TAR627G0593 Trochodendron aralioides HOM05D003074 ORTHO05D002434 4.7e-12 75.1 57 68.4
Sabra16G0289700 Salix brachista HOM05D003074 ORTHO05D002434 8.1e-12 74.3 139 39.6
TWI38G1232 Tripterygium wilfordii HOM05D003074 ORTHO05D002434 8.1e-12 74.3 148 41.2
Sabra11G0125300 Salix brachista HOM05D003074 ORTHO05D002434 1.1e-11 73.9 78 57.7
TAR624G0488 Trochodendron aralioides HOM05D003074 ORTHO05D002434 1.1e-11 73.9 120 45.8
Cc09_g09730 Coffea canephora HOM05D003074 ORTHO05D002434 2.3e-11 72.8 149 37.6
Lalb_Chr15g0081141 Lupinus albus HOM05D003074 ORTHO05D002434 2.3e-11 72.8 61 60.7
Glyma.18G096700 Glycine max HOM05D003074 ORTHO05D002434 3.1e-11 72.4 139 41.0
Sed0026688 Sechium edule HOM05D003074 ORTHO05D002434 5.2e-11 71.6 139 38.1
Lj6g0015217 Lotus japonicus HOM05D003074 ORTHO05D002434 6.8e-11 71.2 139 40.3
TPR.G34803 Trifolium pratense HOM05D003074 ORTHO05D002434 8.9e-11 70.9 53 66.0
Dinv13888 Davidia involucrata HOM05D003074 ORTHO05D002434 1.2e-10 70.5 81 55.6
ECA246G0494 Erigeron canadensis HOM05D003074 ORTHO05D002434 1.5e-10 70.1 136 39.7
MBI02_g07158_MAGBIO Magnolia biondii HOM05D003074 ORTHO05D002434 2.0e-10 69.7 59 61.0
Lsat_1_v5_gn_5_6000 Lactuca sativa HOM05D003074 ORTHO05D002434 2.6e-10 69.3 142 40.8
Thecc.06G219600 Theobroma cacao HOM05D003074 ORTHO05D002434 2.6e-10 69.3 139 33.8
Eucgr.E04066 Eucalyptus grandis HOM05D003074 ORTHO05D002434 4.4e-10 68.6 140 42.1
Atru.chr10.2213 Acer truncatum HOM05D003074 ORTHO05D002434 5.8e-10 68.2 66 56.1
ClCG03G004770 Citrullus lanatus HOM05D003074 ORTHO05D002434 5.8e-10 68.2 136 36.8
LjContig00272g0022666 Lotus japonicus HOM05D003074 ORTHO05D002434 9.8e-10 67.4 89 47.2
PGR004G0474 Punica granatum HOM05D003074 ORTHO05D002434 9.8e-10 67.4 142 37.3
Glyma.15G107300 Glycine max HOM05D008677 ORTHO05D002434 1.7e-09 66.6 146 41.1
Sed0010919 Sechium edule HOM05D003074 ORTHO05D002434 1.7e-09 66.6 136 39.0
CDE02G3016 Ceratophyllum demersum HOM05D003074 ORTHO05D002434 2.2e-09 66.2 90 45.6
CDE05G1751 Ceratophyllum demersum HOM05D003074 ORTHO05D002434 2.2e-09 66.2 138 34.8
Phvul.008G267000 Phaseolus vulgaris HOM05D003074 ORTHO05D002434 2.2e-09 66.2 57 61.4
unitig_85.g27325 Utricularia gibba HOM05D003074 ORTHO05D002434 2.2e-09 66.2 56 57.1
Lalb_Chr04g0248431 Lupinus albus HOM05D003074 ORTHO05D002434 2.9e-09 65.9 61 57.4
Sabra04G0008200 Salix brachista HOM05D003074 ORTHO05D002434 2.9e-09 65.9 141 34.8
Aqoxy1G02176 Aquilegia oxysepala HOM05D003074 ORTHO05D002434 3.7e-09 65.5 141 38.3
MELO3C025367.2 Cucumis melo HOM05D003074 ORTHO05D002434 3.7e-09 65.5 63 50.8
MBI18_g22612_MAGBIO Magnolia biondii HOM05D003074 ORTHO05D002434 3.7e-09 65.5 57 57.9
Manes.17G038600 Manihot esculenta HOM05D003074 ORTHO05D002434 3.7e-09 65.5 148 36.5
Phvul.006G150100 Phaseolus vulgaris HOM05D008677 ORTHO05D002434 3.7e-09 65.5 141 36.9
vmacro03644 Vaccinium macrocarpon HOM05D003074 ORTHO05D002434 4.9e-09 65.1 57 57.9
Cc09_g01730 Coffea canephora HOM05D003074 ORTHO05D002434 6.4e-09 64.7 144 34.0
PGR031G1144 Punica granatum HOM05D003074 ORTHO05D002434 6.4e-09 64.7 138 34.8
Ah.04g165880 Amaranthus hybridus HOM05D003074 ORTHO05D002434 8.3e-09 64.3 139 35.3
CiPaw.10G070500 Carya illinoinensis HOM05D003074 ORTHO05D002434 8.3e-09 64.3 144 41.7
AUR62012700 Chenopodium quinoa HOM05D003074 ORTHO05D002434 8.3e-09 64.3 76 52.6
Glyma.02G290900 Glycine max HOM05D003074 ORTHO05D002434 8.3e-09 64.3 73 52.1
Eucgr.E04065 Eucalyptus grandis HOM05D003074 ORTHO05D002434 1.1e-08 63.9 144 38.9
CDE05G3459 Ceratophyllum demersum HOM05D003074 ORTHO05D002434 1.9e-08 63.2 141 32.6
EL10Ac4g07811 Beta vulgaris HOM05D003074 ORTHO05D002434 2.4e-08 62.8 138 34.8
Eucgr.E04061 Eucalyptus grandis HOM05D003074 ORTHO05D002434 2.4e-08 62.8 143 40.6
Medtr5g092710 Medicago truncatula HOM05D003074 ORTHO05D002434 2.4e-08 62.8 68 48.5
Potri.001G435400 Populus trichocarpa HOM05D003074 ORTHO05D002434 2.4e-08 62.8 140 39.3
Rhsim13G0146000 Rhododendron simsii HOM05D002761 ORTHO05D003351 2.4e-08 62.8 139 38.1
RhsimUnG0109700 Rhododendron simsii HOM05D003074 ORTHO05D002434 2.4e-08 62.8 139 38.1
MELO3C002460.2 Cucumis melo HOM05D003074 ORTHO05D002434 3.2e-08 62.4 138 36.2
Nitab4.5_0009995g0010 Nicotiana tabacum HOM05D003074 ORTHO05D002434 3.2e-08 62.4 67 50.7
Duzib192G0001 Durio zibethinus HOM05D003074 ORTHO05D002434 4.1e-08 62.0 139 35.3
Eucgr.E04060 Eucalyptus grandis HOM05D003074 ORTHO05D002434 4.1e-08 62.0 144 39.6
Aqoxy1G02175 Aquilegia oxysepala HOM05D003074 ORTHO05D002434 5.4e-08 61.6 140 36.4
Eucgr.D01318 Eucalyptus grandis HOM05D003074 ORTHO05D002434 7.1e-08 61.2 144 34.7
Sed0005061 Sechium edule HOM05D003074 ORTHO05D002434 7.1e-08 61.2 79 44.3
CANSAT56G1803 Cannabis sativa HOM05D003074 ORTHO05D002434 1.2e-07 60.5 161 39.1
Medtr2g023010 Medicago truncatula HOM05D008677 ORTHO05D002434 2.1e-07 59.7 146 34.2
DCAR_004216 Daucus carota HOM05D003074 ORTHO05D002434 2.7e-07 59.3 70 50.0
Potri.004G015900 Populus trichocarpa HOM05D003074 ORTHO05D002434 2.7e-07 59.3 143 34.3
AUR62020442 Chenopodium quinoa HOM05D003074 ORTHO05D002434 3.5e-07 58.9 144 34.0
ClCG10G005340 Citrullus lanatus HOM05D003074 ORTHO05D002434 3.5e-07 58.9 73 42.5
Duzib235G0239 Durio zibethinus HOM05D003074 ORTHO05D002434 3.5e-07 58.9 141 33.3
Migut.H01829 Erythranthe guttata HOM05D003074 ORTHO05D002434 3.5e-07 58.9 146 37.0
Cc05_g13710 Coffea canephora HOM05D003074 ORTHO05D002434 4.6e-07 58.5 140 37.9
Rhsim06G0216700 Rhododendron simsii HOM05D003074 ORTHO05D002434 4.6e-07 58.5 123 39.0
CARHR095990 Cardamine hirsuta HOM05D003074 ORTHO05D002434 6.0e-07 58.2 141 34.0
AUR62021958 Chenopodium quinoa HOM05D003074 ORTHO05D002434 6.0e-07 58.2 75 48.0
DCAR_008152 Daucus carota HOM05D003074 ORTHO05D002434 6.0e-07 58.2 73 46.6
MSTRG.12971 Avicennia marina HOM05D003074 ORTHO05D002434 7.8e-07 57.8 74 44.6
Eucgr.E04063 Eucalyptus grandis HOM05D003074 ORTHO05D002434 7.8e-07 57.8 143 37.1
Lalb_Chr15g0087561 Lupinus albus HOM05D008677 ORTHO05D002434 7.8e-07 57.8 144 37.5
Sc03g0008600 Simmondsia chinensis HOM05D003074 ORTHO05D002434 1.0e-06 57.4 139 33.1
MBI02_g40709_MAGBIO Magnolia biondii HOM05D003074 ORTHO05D002434 1.3e-06 57.0 138 32.6
AUR62020443 Chenopodium quinoa HOM05D003074 ORTHO05D002434 1.7e-06 56.6 71 50.7
Thhalv10021814m.g Eutrema salsugineum HOM05D003074 ORTHO05D002434 1.7e-06 56.6 137 33.6
MD10G1320500 Malus domestica HOM05D003074 ORTHO05D002434 1.7e-06 56.6 150 38.0
ATR0752G060 Amborella trichopoda HOM05D003074 ORTHO05D002434 2.3e-06 56.2 135 35.6
AUR62015772 Chenopodium quinoa HOM05D003074 ORTHO05D002434 2.3e-06 56.2 144 34.7
CsaV3_1G010810 Cucumis sativus L. HOM05D003074 ORTHO05D002434 2.3e-06 56.2 127 34.6
Eucgr.E04064 Eucalyptus grandis HOM05D003074 ORTHO05D002434 3.0e-06 55.8 143 35.0
TPR.G9935 Trifolium pratense HOM05D008677 ORTHO05D002434 3.0e-06 55.8 147 36.7
AUR62015773 Chenopodium quinoa HOM05D003074 ORTHO05D002434 3.9e-06 55.5 71 49.3
Oeu063916.1 Olea europaea HOM05D003074 ORTHO05D002434 3.9e-06 55.5 141 33.3
Nitab4.5_0000653g0010 Nicotiana tabacum HOM05D003074 ORTHO05D002434 5.1e-06 55.1 114 36.8
arahy.Tifrunner.gnm1.ann1.22WBGR Arachis hypogaea HOM05D003074 ORTHO05D002434 6.6e-06 54.7 57 54.4
arahy.Tifrunner.gnm1.ann1.B0CFPV Arachis hypogaea HOM05D003074 ORTHO05D002434 6.6e-06 54.7 57 54.4
MELO3C025368.2 Cucumis melo HOM05D003074 ORTHO05D002434 6.6e-06 54.7 62 48.4
CsaV3_3G005050 Cucumis sativus L. HOM05D003074 ORTHO05D002434 6.6e-06 54.7 56 46.4
Eucgr.E04062 Eucalyptus grandis HOM05D003074 ORTHO05D002434 8.6e-06 54.3 144 34.7
Gorai.009G178200 Gossypium raimondii HOM05D003074 ORTHO05D002434 8.6e-06 54.3 143 33.6
Lsat_1_v5_gn_4_60581 Lactuca sativa HOM05D003074 ORTHO05D002434 8.6e-06 54.3 130 31.5


User provided reference genes

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