Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr2.3208 Acer truncatum HOM05D000078 ORTHO05D000025 1.3e-53 212.6 97 100.0
Atru.chr7.2092 Acer truncatum HOM05D000078 ORTHO05D000025 3.9e-45 184.5 101 83.2
Atru.chr7.2106 Acer truncatum HOM05D000078 ORTHO05D000025 3.9e-45 184.5 101 83.2
Ciclev10009370m.g Citrus clementina HOM05D000078 ORTHO05D000025 8.2e-19 97.1 98 57.1
Duzib187G0317 Durio zibethinus HOM05D000078 ORTHO05D000025 4.5e-17 91.3 95 54.7
Thecc.09G045000 Theobroma cacao HOM05D000078 ORTHO05D000025 1.4e-15 86.3 95 51.6
Duzib168G1006 Durio zibethinus HOM05D000078 ORTHO05D000025 1.9e-15 85.9 95 51.6
COL.COLO4_20967 Corchorus olitorius HOM05D000078 ORTHO05D000025 4.6e-14 81.3 96 53.1
Gohir.A05G047100 Gossypium hirsutum HOM05D000078 ORTHO05D000025 4.6e-14 81.3 95 50.5
Gohir.A06G092900 Gossypium hirsutum HOM05D000078 ORTHO05D000025 4.6e-14 81.3 95 48.4
Gohir.D05G048832 Gossypium hirsutum HOM05D000078 ORTHO05D000025 4.6e-14 81.3 95 50.5
Gohir.D06G092500 Gossypium hirsutum HOM05D000078 ORTHO05D000025 4.6e-14 81.3 95 48.4
Gorai.010G106600 Gossypium raimondii HOM05D000078 ORTHO05D000025 4.6e-14 81.3 95 48.4
Duzib150G0870 Durio zibethinus HOM05D000078 ORTHO05D000025 2.3e-13 79.0 95 49.5
TWI34G0519 Tripterygium wilfordii HOM05D000078 ORTHO05D000025 3.9e-13 78.2 95 45.3
CANSAT25G0471 Cannabis sativa HOM05D000078 ORTHO05D000025 2.5e-12 75.5 99 49.5
Gohir.A08G249960 Gossypium hirsutum HOM05D000078 ORTHO05D000025 3.3e-12 75.1 95 47.4
Gorai.009G050200 Gossypium raimondii HOM05D000078 ORTHO05D000025 7.4e-12 73.9 65 61.5
Gohir.D05G048900 Gossypium hirsutum HOM05D000078 ORTHO05D000025 9.7e-12 73.6 65 61.5
Manes.16G075800 Manihot esculenta HOM05D000078 ORTHO05D000025 9.7e-12 73.6 95 49.5
Gohir.D08G271400 Gossypium hirsutum HOM05D000078 ORTHO05D000025 2.8e-11 72.0 95 46.3
Gorai.004G289800 Gossypium raimondii HOM05D000078 ORTHO05D000025 2.8e-11 72.0 95 46.3
QL12p041552 Quercus lobata HOM05D000078 ORTHO05D000025 6.3e-11 70.9 97 45.4
Manes.03G058500 Manihot esculenta HOM05D000078 ORTHO05D000025 1.4e-10 69.7 99 42.4
Cfa013363 Carpinus fangiana HOM05D000078 ORTHO05D000025 1.8e-10 69.3 60 63.3
Haze_21884 Corylus avellana HOM05D000078 ORTHO05D000025 2.4e-10 68.9 60 63.3
CiPaw.07G204500 Carya illinoinensis HOM05D000078 ORTHO05D000025 3.1e-10 68.6 84 52.4
TWI63G0388 Tripterygium wilfordii HOM05D000078 ORTHO05D000025 4.1e-10 68.2 95 43.2
CiPaw.08G025500 Carya illinoinensis HOM05D000078 ORTHO05D000025 1.5e-09 66.2 59 59.3
PSO566G0299 Papaver somniferum HOM05D000078 ORTHO05D000025 1.5e-09 66.2 93 38.7
PSO782G0911 Papaver somniferum HOM05D000078 ORTHO05D000025 2.0e-09 65.9 93 37.6
AL6G22290 Arabidopsis lyrata HOM05D000078 ORTHO05D000025 5.9e-09 64.3 96 43.8
CSS0003547 Camellia sinensis var. sinensis HOM05D000078 ORTHO05D000025 5.9e-09 64.3 55 56.4
CSS0033589 Camellia sinensis var. sinensis HOM05D000078 ORTHO05D000025 5.9e-09 64.3 45 64.4
AT5G11590 Arabidopsis thaliana HOM05D000078 ORTHO05D000025 1.3e-08 63.2 62 56.5
Lj7P661T33 Lonicera japonica HOM05D000078 ORTHO05D000025 1.3e-08 63.2 53 54.7
Sabra06G0186700 Salix brachista HOM05D000078 ORTHO05D000025 1.7e-08 62.8 63 54.0
TWI34G0713 Tripterygium wilfordii HOM05D000078 ORTHO05D000025 1.7e-08 62.8 57 50.9
Haze_25802 Corylus avellana HOM05D000078 ORTHO05D000025 2.2e-08 62.4 56 57.1
Eucgr.C00546 Eucalyptus grandis HOM05D000078 ORTHO05D000025 2.9e-08 62.0 60 58.3
Eucgr.C00590 Eucalyptus grandis HOM05D000078 ORTHO05D000025 2.9e-08 62.0 60 58.3
CSS0000024 Camellia sinensis var. sinensis HOM05D000078 ORTHO05D000025 3.8e-08 61.6 59 52.5
ECA233G0400 Erigeron canadensis HOM05D000078 ORTHO05D000025 3.8e-08 61.6 67 41.8
Lsat_1_v5_gn_6_23641 Lactuca sativa HOM05D000078 ORTHO05D000025 3.8e-08 61.6 70 48.6
Cfa003207 Carpinus fangiana HOM05D000078 ORTHO05D000025 5.0e-08 61.2 43 65.1
CiPaw.03G226800 Carya illinoinensis HOM05D000078 ORTHO05D000025 6.5e-08 60.8 58 51.7
Hma1.2p1_0012F.1_g007260 Hydrangea macrophylla HOM05D000078 ORTHO05D000025 6.5e-08 60.8 48 62.5
Lsat_1_v5_gn_1_46781 Lactuca sativa HOM05D000078 ORTHO05D000025 6.5e-08 60.8 71 49.3
Potri.018G043900 Populus trichocarpa HOM05D000078 ORTHO05D000025 6.5e-08 60.8 65 47.7
Prupe.7G222700 Prunus persica HOM05D000078 ORTHO05D000025 6.5e-08 60.8 89 42.7
QL02p042338 Quercus lobata HOM05D000078 ORTHO05D000025 6.5e-08 60.8 58 51.7
TAR624G0122 Trochodendron aralioides HOM05D000078 ORTHO05D000025 8.5e-08 60.5 59 54.2
Carub.0006s1007 Capsella rubella HOM05D000078 ORTHO05D000025 1.1e-07 60.1 91 40.7
DCAR_000752 Daucus carota HOM05D000078 ORTHO05D000025 1.1e-07 60.1 60 50.0
CARHR201630 Cardamine hirsuta HOM05D000078 ORTHO05D000025 1.9e-07 59.3 72 52.8
Gorai.001G008100 Gossypium raimondii HOM05D000078 ORTHO05D000025 1.9e-07 59.3 61 54.1
Hma1.2p1_0945F.1_g240280 Hydrangea macrophylla HOM05D000078 ORTHO05D000025 1.9e-07 59.3 50 60.0
Hma1.2p1_1080F.1_g255060 Hydrangea macrophylla HOM05D000078 ORTHO05D000025 1.9e-07 59.3 44 65.9
Sabra18G0044000 Salix brachista HOM05D000078 ORTHO05D000025 2.5e-07 58.9 54 51.9
TWI32G0685 Tripterygium wilfordii HOM05D000078 ORTHO05D000025 2.5e-07 58.9 43 65.1
DCAR_004471 Daucus carota HOM05D000078 ORTHO05D000025 3.2e-07 58.5 54 59.3
Oeu036408.1 Olea europaea HOM05D000078 ORTHO05D000025 3.2e-07 58.5 63 52.4
Actinidia30276 Actinidia chinensis HOM05D000078 ORTHO05D000025 4.2e-07 58.2 50 56.0
Gohir.D07G008300 Gossypium hirsutum HOM05D000078 ORTHO05D000025 4.2e-07 58.2 61 54.1
Hma1.2p1_0049F.1_g028620 Hydrangea macrophylla HOM05D000078 ORTHO05D000025 4.2e-07 58.2 91 40.7
Prupe.1G448600 Prunus persica HOM05D000078 ORTHO05D000025 4.2e-07 58.2 52 59.6
MELO3C024714.2 Cucumis melo HOM05D000078 ORTHO05D000025 5.5e-07 57.8 43 67.4
CsaV3_1G030460 Cucumis sativus L. HOM05D000078 ORTHO05D000025 5.5e-07 57.8 43 67.4
Thhalv10015895m.g Eutrema salsugineum HOM05D000078 ORTHO05D000025 7.2e-07 57.4 62 53.2
Gohir.A06G065900 Gossypium hirsutum HOM05D000078 ORTHO05D000025 7.2e-07 57.4 61 55.7
Gohir.D06G064500 Gossypium hirsutum HOM05D000078 ORTHO05D000025 7.2e-07 57.4 61 55.7
RcHm_v2.0_Chr6g0306191 Rosa chinensis HOM05D000078 ORTHO05D000025 7.2e-07 57.4 76 44.7
Dinv14262 Davidia involucrata HOM05D000078 ORTHO05D002768 9.3e-07 57.0 51 56.9
Sp6g32020 Schrenkiella parvula HOM05D000078 ORTHO05D000025 1.2e-06 56.6 62 53.2
FvH4_2g35620 Fragaria vesca HOM05D000078 ORTHO05D000025 1.6e-06 56.2 75 45.3
FAN15G0167 Fragaria x ananassa HOM05D000078 ORTHO05D000025 1.6e-06 56.2 75 45.3
FAN27G1112 Fragaria x ananassa HOM05D000078 ORTHO05D000025 1.6e-06 56.2 75 45.3
Gorai.010G075300 Gossypium raimondii HOM05D000078 ORTHO05D000025 1.6e-06 56.2 55 56.4
HanXRQChr02g0051231 Helianthus annuus HOM05D000078 ORTHO05D000025 1.6e-06 56.2 47 57.4
Hma1.2p1_0393F.1_g143050 Hydrangea macrophylla HOM05D000078 ORTHO05D000025 1.6e-06 56.2 51 56.9
Sed0003711 Sechium edule HOM05D000078 ORTHO05D000025 1.6e-06 56.2 88 42.0
Actinidia14673 Actinidia chinensis HOM05D000078 ORTHO05D000025 2.7e-06 55.5 52 51.9
THA.LOC104799195 Tarenaya hassleriana HOM05D000078 ORTHO05D000025 2.7e-06 55.5 60 53.3
Gohir.A07G007800 Gossypium hirsutum HOM05D000078 ORTHO05D000025 3.6e-06 55.1 61 52.5
HanXRQChr13g0402081 Helianthus annuus HOM05D000078 ORTHO05D000025 3.6e-06 55.1 47 57.4
Oeu037318.1 Olea europaea HOM05D000078 ORTHO05D000025 3.6e-06 55.1 65 49.2
TAR102G0004 Trochodendron aralioides HOM05D000078 ORTHO05D000025 3.6e-06 55.1 58 51.7
CiPaw.08G025600 Carya illinoinensis HOM05D000078 ORTHO05D000025 4.6e-06 54.7 59 47.5
Duzib150G1270 Durio zibethinus HOM05D000078 ORTHO05D000025 4.6e-06 54.7 61 54.1
TAR383G0719 Trochodendron aralioides HOM05D000078 ORTHO05D000025 4.6e-06 54.7 87 39.1
Glyma.17G194100 Glycine max HOM05D000078 ORTHO05D000025 7.9e-06 53.9 95 40.0
Nn3g18174 Nelumbo nucifera HOM05D000078 ORTHO05D000025 7.9e-06 53.9 57 49.1
Phvul.001G073800 Phaseolus vulgaris HOM05D000078 ORTHO05D000025 7.9e-06 53.9 52 61.5
TAR626G1888 Trochodendron aralioides HOM05D000078 ORTHO05D000025 7.9e-06 53.9 87 36.8


User provided reference genes

Program Settings