Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr2.3021 Acer truncatum HOM05D003935 ORTHO05D052568 4.6e-94 347.8 167 100.0
Sp2g24700 Schrenkiella parvula HOM05D003935 ORTHO05D005096 2.2e-08 63.2 76 50.0
Gohir.A08G137866 Gossypium hirsutum HOM05D003935 ORTHO05D005096 1.1e-07 60.8 68 52.9
Gohir.D08G159150 Gossypium hirsutum HOM05D003935 ORTHO05D005096 1.1e-07 60.8 68 52.9
Gorai.004G165200 Gossypium raimondii HOM05D003935 ORTHO05D005096 1.1e-07 60.8 68 52.9
Psat7g207040 Pisum sativum HOM05D003935 ORTHO05D005096 1.1e-07 60.8 76 47.4
Actinidia24986 Actinidia chinensis HOM05D003935 ORTHO05D005096 1.5e-07 60.5 79 49.4
Ciclev10005442m.g Citrus clementina HOM05D003935 ORTHO05D005096 1.5e-07 60.5 40 77.5
Medtr4g036265 Medicago truncatula HOM05D003935 ORTHO05D005096 1.5e-07 60.5 76 47.4
BcaB05g21604 Brassica carinata HOM05D003935 ORTHO05D005096 1.9e-07 60.1 80 45.0
AL7G47000 Arabidopsis lyrata HOM05D003935 ORTHO05D003430 2.5e-07 59.7 55 58.2
AUR62015457 Chenopodium quinoa HOM05D003935 ORTHO05D005096 2.5e-07 59.7 70 51.4
ATR0057G070 Amborella trichopoda HOM05D003935 ORTHO05D005096 3.2e-07 59.3 51 60.8
arahy.Tifrunner.gnm1.ann1.9TCX0P Arachis hypogaea HOM05D003935 ORTHO05D005096 3.2e-07 59.3 67 50.7
arahy.Tifrunner.gnm1.ann1.YZL4IN Arachis hypogaea HOM05D003935 ORTHO05D005096 3.2e-07 59.3 67 50.7
Duzib133G0969 Durio zibethinus HOM05D003935 ORTHO05D005096 3.2e-07 59.3 46 67.4
Glyma.12G005700 Glycine max HOM05D003935 ORTHO05D005096 3.2e-07 59.3 78 46.2
Sabra01G0097600 Salix brachista HOM05D003935 ORTHO05D005096 3.2e-07 59.3 51 58.8
Sp6g35250 Schrenkiella parvula HOM05D003935 ORTHO05D005096 3.2e-07 59.3 129 34.9
Atru.chr1.845 Acer truncatum HOM05D003935 ORTHO05D005096 4.2e-07 58.9 51 62.7
COL.COLO4_12445 Corchorus olitorius HOM05D003935 ORTHO05D005096 4.2e-07 58.9 46 65.2
Migut.F00500 Erythranthe guttata HOM05D003935 ORTHO05D005096 4.2e-07 58.9 57 56.1
Nn6g33882 Nelumbo nucifera HOM05D003935 ORTHO05D005096 4.2e-07 58.9 68 52.9
Sc10g0008570 Simmondsia chinensis HOM05D003935 ORTHO05D005096 4.2e-07 58.9 66 50.0
PGSC0003DMG400021594 Solanum tuberosum HOM05D003935 ORTHO05D005096 4.2e-07 58.9 57 54.4
Thecc.01G388100 Theobroma cacao HOM05D003935 ORTHO05D005096 4.2e-07 58.9 46 65.2
TAR374G1483 Trochodendron aralioides HOM05D003935 ORTHO05D005096 4.2e-07 58.9 68 52.9
AL8G38190 Arabidopsis lyrata HOM05D003935 ORTHO05D005096 5.5e-07 58.5 55 56.4
BcaC06g33155 Brassica carinata HOM05D003935 ORTHO05D005096 5.5e-07 58.5 44 68.2
CANSAT21G2109 Cannabis sativa HOM05D003935 ORTHO05D005096 5.5e-07 58.5 66 53.0
AUR62002246 Chenopodium quinoa HOM05D003935 ORTHO05D005096 5.5e-07 58.5 77 48.1
Ca_12623_v3 Cicer arietinum L. HOM05D003935 ORTHO05D005096 5.5e-07 58.5 51 58.8
Dinv06578 Davidia involucrata HOM05D003935 ORTHO05D005096 5.5e-07 58.5 79 46.8
Dinv16851 Davidia involucrata HOM05D003935 ORTHO05D005096 5.5e-07 58.5 79 46.8
PSO063G2499 Papaver somniferum HOM05D003935 ORTHO05D005096 5.5e-07 58.5 77 44.2
PSO782G0781 Papaver somniferum HOM05D003935 ORTHO05D005096 5.5e-07 58.5 77 44.2
TPR.G3680 Trifolium pratense HOM05D003935 ORTHO05D005096 5.5e-07 58.5 51 58.8
Actinidia13591 Actinidia chinensis HOM05D003935 ORTHO05D005096 7.2e-07 58.2 51 58.8
Aqoxy7G00829 Aquilegia oxysepala HOM05D003935 ORTHO05D005096 7.2e-07 58.2 51 56.9
CiPaw.14G023500 Carya illinoinensis HOM05D003935 ORTHO05D005096 7.2e-07 58.2 51 58.8
Haze_02753 Corylus avellana HOM05D003935 ORTHO05D005096 7.2e-07 58.2 45 64.4
Thhalv10004633m.g Eutrema salsugineum HOM05D003935 ORTHO05D005096 7.2e-07 58.2 76 47.4
Nitab4.5_0000262g0090 Nicotiana tabacum HOM05D003935 ORTHO05D005096 7.2e-07 58.2 46 65.2
Sabra03G0073800 Salix brachista HOM05D003935 ORTHO05D005096 7.2e-07 58.2 90 44.4
Aa31LG11G1910 Aethionema arabicum HOM05D003935 ORTHO05D005096 9.4e-07 57.8 76 47.4
MSTRG.27208 Avicennia marina HOM05D003935 ORTHO05D005096 9.4e-07 57.8 57 54.4
Duzib138G0818 Durio zibethinus HOM05D003935 ORTHO05D005096 9.4e-07 57.8 46 65.2
Lj1C977G12 Lonicera japonica HOM05D003935 ORTHO05D005096 9.4e-07 57.8 51 58.8
Solyc06g034160.3 Solanum lycopersicum HOM05D003935 ORTHO05D005096 9.4e-07 57.8 46 63.0
Sopen06g010820 Solanum pennellii HOM05D003935 ORTHO05D005096 9.4e-07 57.8 46 63.0
SGA_v2.0_scaffold44G16558 Striga asiatica HOM05D003935 ORTHO05D005096 9.4e-07 57.8 51 58.8
AT5G61500 Arabidopsis thaliana HOM05D003935 ORTHO05D005096 1.2e-06 57.4 57 54.4
Oeu031400.2 Olea europaea HOM05D003935 ORTHO05D005096 1.2e-06 57.4 51 58.8
SalBow1G3743 Salvia bowleyana HOM05D003935 ORTHO05D005096 1.2e-06 57.4 57 56.1
THA.LOC104801570 Tarenaya hassleriana HOM05D003935 ORTHO05D005096 1.2e-06 57.4 46 63.0
THA.LOC104819415 Tarenaya hassleriana HOM05D003935 ORTHO05D005096 1.2e-06 57.4 76 46.1
CAN.G330.5 Capsicum annuum HOM05D003935 ORTHO05D005096 1.6e-06 57.0 40 70.0
MELO3C022280.2 Cucumis melo HOM05D003935 ORTHO05D005096 1.6e-06 57.0 40 70.0
DCAR_020181 Daucus carota HOM05D003935 ORTHO05D005096 1.6e-06 57.0 51 58.8
Glyma.09G231000 Glycine max HOM05D003935 ORTHO05D005096 1.6e-06 57.0 51 58.8
Manes.06G132800 Manihot esculenta HOM05D003935 ORTHO05D005096 1.6e-06 57.0 51 58.8
Potri.001G126500 Populus trichocarpa HOM05D003935 ORTHO05D005096 1.6e-06 57.0 51 58.8
QL04p034713 Quercus lobata HOM05D003935 ORTHO05D005096 1.6e-06 57.0 51 58.8
arahy.Tifrunner.gnm1.ann1.16SP4W Arachis hypogaea HOM05D003935 ORTHO05D005096 2.1e-06 56.6 40 70.0
C07p45210 Brassica napus HOM05D003935 ORTHO05D005096 2.1e-06 56.6 44 65.9
BolC7t45044H Brassica oleracea HOM05D003935 ORTHO05D005096 2.1e-06 56.6 44 65.9
BraA02t04926Z Brassica rapa HOM05D003935 ORTHO05D005096 2.1e-06 56.6 69 47.8
Cpa.g.sc16.168 Carica papaya HOM05D003935 ORTHO05D005096 2.1e-06 56.6 40 70.0
ClCG06G002480 Citrullus lanatus HOM05D003935 ORTHO05D005096 2.1e-06 56.6 40 70.0
CsaV3_6G008640 Cucumis sativus L. HOM05D003935 ORTHO05D005096 2.1e-06 56.6 40 70.0
Gohir.A07G148000 Gossypium hirsutum HOM05D003935 ORTHO05D005096 2.1e-06 56.6 46 60.9
Lalb_Chr01g0000281 Lupinus albus HOM05D003935 ORTHO05D005096 2.1e-06 56.6 40 70.0
Lalb_Chr19g0126281 Lupinus albus HOM05D003935 ORTHO05D005096 2.1e-06 56.6 40 70.0
Nitab4.5_0000448g0060 Nicotiana tabacum HOM05D003935 ORTHO05D005096 2.1e-06 56.6 40 70.0
Nitab4.5_0001267g0110 Nicotiana tabacum HOM05D003935 ORTHO05D005096 2.1e-06 56.6 40 70.0
Nitab4.5_0001358g0020 Nicotiana tabacum HOM05D003935 ORTHO05D005096 2.1e-06 56.6 40 70.0
Phvul.011G006500 Phaseolus vulgaris HOM05D003935 ORTHO05D005096 2.1e-06 56.6 40 70.0
Sed0016106 Sechium edule HOM05D003935 ORTHO05D005096 2.1e-06 56.6 40 70.0
GSVIVG01018224001 Vitis vinifera HOM05D003935 ORTHO05D005096 2.1e-06 56.6 40 70.0
Aa31LG3G18800 Aethionema arabicum HOM05D003935 ORTHO05D005096 2.7e-06 56.2 73 49.3
EL10Ac3g05885 Beta vulgaris HOM05D003935 ORTHO05D005096 2.7e-06 56.2 51 58.8
Carub.0008s2219 Capsella rubella HOM05D003935 ORTHO05D005096 2.7e-06 56.2 54 55.6
CARHR275270 Cardamine hirsuta HOM05D003935 ORTHO05D005096 2.7e-06 56.2 54 55.6
Hund04562 Selenicereus undatus HOM05D003935 ORTHO05D005096 2.7e-06 56.2 66 47.0
Actinidia01047 Actinidia chinensis HOM05D003935 ORTHO05D005096 3.6e-06 55.8 51 58.8
MSTRG.8834 Avicennia marina HOM05D003935 ORTHO05D005096 3.6e-06 55.8 58 53.4
A03p47100 Brassica napus HOM05D003935 ORTHO05D005096 3.6e-06 55.8 55 54.5
BraA03t13837Z Brassica rapa HOM05D003935 ORTHO05D005096 3.6e-06 55.8 55 54.5
Cfa012922 Carpinus fangiana HOM05D003935 ORTHO05D005096 3.6e-06 55.8 51 56.9
Eucgr.K00175 Eucalyptus grandis HOM05D003935 ORTHO05D005096 3.6e-06 55.8 51 56.9
Hma1.2p1_0432F.1_g151940 Hydrangea macrophylla HOM05D003935 ORTHO05D005096 3.6e-06 55.8 40 70.0
Lsat_1_v5_gn_9_51820 Lactuca sativa HOM05D003935 ORTHO05D005096 3.6e-06 55.8 51 56.9
Potri.003G107000 Populus trichocarpa HOM05D003935 ORTHO05D005096 3.6e-06 55.8 51 56.9
PGR142G1672 Punica granatum HOM05D003935 ORTHO05D005096 3.6e-06 55.8 51 56.9
RcHm_v2.0_Chr1g0346321 Rosa chinensis HOM05D003935 ORTHO05D005096 3.6e-06 55.8 51 54.9
arahy.Tifrunner.gnm1.ann1.2B4GQV Arachis hypogaea HOM05D003935 ORTHO05D005096 4.7e-06 55.5 40 70.0
BcaC06g33158 Brassica carinata HOM05D003935 ORTHO05D005096 4.7e-06 55.5 44 63.6
Cc02_g04470 Coffea canephora HOM05D003935 ORTHO05D005096 4.7e-06 55.5 40 67.5
Gohir.D07G154200 Gossypium hirsutum HOM05D003935 ORTHO05D005096 4.7e-06 55.5 46 58.7
Gorai.001G176400 Gossypium raimondii HOM05D003935 ORTHO05D005096 4.7e-06 55.5 46 58.7
VMungo1127G0071 Vigna mungo HOM05D003935 ORTHO05D005096 4.7e-06 55.5 40 67.5
Atru.chr8.2277 Acer truncatum HOM05D004746 ORTHO05D005863 6.1e-06 55.1 31 80.6
CSS0045715 Camellia sinensis var. sinensis HOM05D003935 ORTHO05D005096 6.1e-06 55.1 50 58.0
HanXRQChr15g0485951 Helianthus annuus HOM05D003935 ORTHO05D005096 6.1e-06 55.1 51 54.9
Hma1.2p1_1132F.1_g260170 Hydrangea macrophylla HOM05D003935 ORTHO05D005096 6.1e-06 55.1 39 71.8
MD02G1218100 Malus domestica HOM05D003935 ORTHO05D005096 6.1e-06 55.1 58 53.4
Thhalv10014155m.g Eutrema salsugineum HOM05D003935 ORTHO05D005096 8.0e-06 54.7 55 50.9
Rhsim09G0190400 Rhododendron simsii HOM05D003935 ORTHO05D005096 8.0e-06 54.7 40 67.5
TWI14G1423 Tripterygium wilfordii HOM05D003935 ORTHO05D005096 8.0e-06 54.7 51 58.8


User provided reference genes

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