Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr2.2949 Acer truncatum HOM05D005472 ORTHO05D005897 2.8e-112 408.7 213 100.0
Atru.chr13.291 Acer truncatum HOM05D005472 ORTHO05D005897 4.0e-95 351.7 204 92.2
Thecc.08G044600 Theobroma cacao HOM05D005472 ORTHO05D005897 5.9e-54 214.9 223 52.5
COL.COLO4_26145 Corchorus olitorius HOM05D005472 ORTHO05D005897 3.8e-53 212.2 215 54.9
Gorai.009G194600 Gossypium raimondii HOM05D005472 ORTHO05D005897 5.0e-53 211.8 223 51.6
CiPaw.08G066500 Carya illinoinensis HOM05D005472 ORTHO05D005897 1.9e-52 209.9 205 55.1
Gohir.D05G189400 Gossypium hirsutum HOM05D005472 ORTHO05D005897 1.9e-52 209.9 223 51.6
Potri.005G239500 Populus trichocarpa HOM05D005472 ORTHO05D005897 1.9e-52 209.9 218 55.0
Gohir.A05G186500 Gossypium hirsutum HOM05D005472 ORTHO05D005897 2.5e-52 209.5 223 51.6
Ciclev10001635m.g Citrus clementina HOM05D005472 ORTHO05D005897 5.5e-52 208.4 205 58.5
Duzib116G0175 Durio zibethinus HOM05D005472 ORTHO05D005897 1.0e-50 204.1 218 52.3
Sabra05G0185100 Salix brachista HOM05D005472 ORTHO05D005897 2.3e-50 203.0 218 53.7
Manes.18G013500 Manihot esculenta HOM05D005472 ORTHO05D005897 3.0e-50 202.6 210 53.8
Gohir.A05G257000 Gossypium hirsutum HOM05D005472 ORTHO05D005897 4.0e-50 202.2 223 49.3
Manes.05G147400 Manihot esculenta HOM05D005472 ORTHO05D005897 4.0e-50 202.2 217 53.5
TWI36G1185 Tripterygium wilfordii HOM05D005472 ORTHO05D005897 4.0e-50 202.2 220 51.8
Duzib041G0268 Durio zibethinus HOM05D005472 ORTHO05D005897 5.2e-50 201.8 223 48.9
Haze_22634 Corylus avellana HOM05D005472 ORTHO05D005897 1.5e-49 200.3 215 53.0
TWI12G0454 Tripterygium wilfordii HOM05D005472 ORTHO05D005897 2.6e-49 199.5 220 50.0
Gohir.D05G258500 Gossypium hirsutum HOM05D005472 ORTHO05D005897 7.5e-49 198.0 223 48.9
Cfa013951 Carpinus fangiana HOM05D005472 ORTHO05D005897 1.7e-48 196.8 214 52.8
Gorai.009G270000 Gossypium raimondii HOM05D005472 ORTHO05D005897 2.2e-48 196.4 223 48.4
THA.LOC104809508 Tarenaya hassleriana HOM05D005472 ORTHO05D005897 3.7e-48 195.7 205 52.7
Potri.002G022200 Populus trichocarpa HOM05D005472 ORTHO05D005897 8.2e-48 194.5 218 53.2
QL02p011634 Quercus lobata HOM05D005472 ORTHO05D005897 1.1e-47 194.1 212 54.7
GSVIVG01009906001 Vitis vinifera HOM05D005472 ORTHO05D005897 2.7e-46 189.5 230 48.3
THA.LOC104811410 Tarenaya hassleriana HOM05D005472 ORTHO05D005897 3.5e-46 189.1 205 49.8
CiPaw.07G149800 Carya illinoinensis HOM05D005472 ORTHO05D005897 5.9e-46 188.3 216 50.0
ClCG05G018260 Citrullus lanatus HOM05D005472 ORTHO05D005897 1.0e-45 187.6 231 46.3
Sp1g17770 Schrenkiella parvula HOM05D005472 ORTHO05D005897 6.5e-45 184.9 207 47.8
Nn1g05892 Nelumbo nucifera HOM05D005472 ORTHO05D005897 1.5e-44 183.7 234 47.4
Glyma.15G134600 Glycine max HOM05D005472 ORTHO05D005897 3.2e-44 182.6 226 47.8
BraA08t34891Z Brassica rapa HOM05D005472 ORTHO05D005897 1.2e-43 180.6 207 47.3
Prupe.1G365300 Prunus persica HOM05D005472 ORTHO05D005897 1.6e-43 180.3 224 46.9
Sabra02G0018300 Salix brachista HOM05D005472 ORTHO05D005897 2.1e-43 179.9 218 50.0
A08p29540 Brassica napus HOM05D005472 ORTHO05D005897 3.6e-43 179.1 203 47.8
CsaV3_3G045880 Cucumis sativus L. HOM05D005472 ORTHO05D005897 6.1e-43 178.3 231 43.3
TAR628G1150 Trochodendron aralioides HOM05D005472 ORTHO05D005897 1.8e-42 176.8 234 45.7
MELO3C003750.2 Cucumis melo HOM05D005472 ORTHO05D005897 2.3e-42 176.4 231 43.7
CARHR020470 Cardamine hirsuta HOM05D005472 ORTHO05D005897 4.0e-42 175.6 207 46.4
Sed0019370 Sechium edule HOM05D005472 ORTHO05D005897 4.0e-42 175.6 231 45.5
AT1G19980 Arabidopsis thaliana HOM05D005472 ORTHO05D005897 6.8e-42 174.9 207 46.4
Eucgr.F00587 Eucalyptus grandis HOM05D005472 ORTHO05D005897 6.8e-42 174.9 234 44.4
Thhalv10008122m.g Eutrema salsugineum HOM05D005472 ORTHO05D005897 2.0e-41 173.3 205 45.4
AL1G32710 Arabidopsis lyrata HOM05D005472 ORTHO05D005897 3.4e-41 172.6 207 45.4
BcaB03g12884 Brassica carinata HOM05D005472 ORTHO05D005897 7.5e-41 171.4 203 47.8
Ca_00891_v3 Cicer arietinum L. HOM05D005472 ORTHO05D005897 7.5e-41 171.4 231 42.9
Cc10_g01680 Coffea canephora HOM05D005472 ORTHO05D005897 3.7e-40 169.1 215 45.6
FAN15G2782 Fragaria x ananassa HOM05D005472 ORTHO05D005897 3.7e-40 169.1 228 43.9
VMungo0540G2141 Vigna mungo HOM05D005472 ORTHO05D005897 4.8e-40 168.7 221 45.7
FAN27G2825 Fragaria x ananassa HOM05D005472 ORTHO05D005897 6.3e-40 168.3 228 43.9
CAN.G311.30 Capsicum annuum HOM05D005472 ORTHO05D005897 8.3e-40 167.9 212 45.3
PGSC0003DMG400009864 Solanum tuberosum HOM05D005472 ORTHO05D005897 8.3e-40 167.9 212 44.8
BraA07t29336Z Brassica rapa HOM05D005472 ORTHO05D005897 1.1e-39 167.5 202 44.1
PGR031G2834 Punica granatum HOM05D005472 ORTHO05D005897 1.1e-39 167.5 228 44.7
FvH4_2g38440 Fragaria vesca HOM05D005472 ORTHO05D005897 1.4e-39 167.2 228 43.4
Aa31LG7G4450 Aethionema arabicum HOM05D005472 ORTHO05D005897 2.4e-39 166.4 212 43.4
Glyma.09G028700 Glycine max HOM05D005472 ORTHO05D005897 2.4e-39 166.4 221 46.2
Phvul.006G124300 Phaseolus vulgaris HOM05D005472 ORTHO05D005897 2.4e-39 166.4 221 44.8
Lalb_Chr20g0120221 Lupinus albus HOM05D005472 ORTHO05D005897 3.1e-39 166.0 242 41.7
BcaB03g14419 Brassica carinata HOM05D005472 ORTHO05D005897 7.0e-39 164.9 205 45.9
CANSAT25G0086 Cannabis sativa HOM05D005472 ORTHO05D005897 7.0e-39 164.9 220 45.9
Carub.0001s1951 Capsella rubella HOM05D005472 ORTHO05D005897 9.1e-39 164.5 206 44.7
Solyc04g081450.3 Solanum lycopersicum HOM05D005472 ORTHO05D005897 1.2e-38 164.1 212 43.9
Sopen04g035060 Solanum pennellii HOM05D005472 ORTHO05D005897 1.6e-38 163.7 212 43.9
FAN20G3206 Fragaria x ananassa HOM05D005472 ORTHO05D005897 7.7e-38 161.4 227 42.7
Psat1g164760 Pisum sativum HOM05D005472 ORTHO05D005897 2.2e-37 159.8 203 42.9
Peaxi162Scf00438g00827 Petunia axillaris HOM05D005472 ORTHO05D005897 5.0e-37 158.7 215 40.9
Cpa.g.sc26.42 Carica papaya HOM05D005472 ORTHO05D005897 6.5e-37 158.3 221 45.7
Medtr2g031630 Medicago truncatula HOM05D005472 ORTHO05D005897 6.5e-37 158.3 226 41.2
BolC7t42878H Brassica oleracea HOM05D005472 ORTHO05D005897 8.5e-37 157.9 212 40.6
TPR.G15190 Trifolium pratense HOM05D005472 ORTHO05D005897 1.9e-36 156.8 219 42.0
MELO3C011012.2 Cucumis melo HOM05D005472 ORTHO05D005897 3.2e-36 156.0 219 42.0
Lj6g0021117 Lotus japonicus HOM05D005472 ORTHO05D005897 4.2e-36 155.6 202 45.5
PSO170G4377 Papaver somniferum HOM05D005472 ORTHO05D005897 4.2e-36 155.6 233 40.3
Hund05189 Selenicereus undatus HOM05D005472 ORTHO05D005897 4.2e-36 155.6 228 41.2
BcaC07g39015 Brassica carinata HOM05D005472 ORTHO05D005897 1.2e-35 154.1 197 45.2
C08p19880 Brassica napus HOM05D005472 ORTHO05D005897 1.2e-35 154.1 197 44.7
BolC8t49626H Brassica oleracea HOM05D005472 ORTHO05D005897 1.2e-35 154.1 197 44.7
Dinv31847 Davidia involucrata HOM05D005472 ORTHO05D005897 1.2e-35 154.1 216 45.4
CsaV3_2G029530 Cucumis sativus L. HOM05D005472 ORTHO05D005897 2.1e-35 153.3 220 42.7
PSO700G0202 Papaver somniferum HOM05D005472 ORTHO05D005897 4.7e-35 152.1 233 40.3
A07p16090 Brassica napus HOM05D005472 ORTHO05D005897 6.1e-35 151.8 190 43.7
ClCG08G014280 Citrullus lanatus HOM05D005472 ORTHO05D005897 6.1e-35 151.8 238 39.5
RcHm_v2.0_Chr6g0302861 Rosa chinensis HOM05D005472 ORTHO05D005897 1.8e-34 150.2 215 43.3
AUR62033908 Chenopodium quinoa HOM05D005472 ORTHO05D005897 4.0e-34 149.1 225 39.1
Nitab4.5_0002561g0030 Nicotiana tabacum HOM05D005472 ORTHO05D005897 5.2e-34 148.7 214 41.1
BcaB03g14348 Brassica carinata HOM05D005472 ORTHO05D005897 2.6e-33 146.4 235 36.6
TAR376G0796 Trochodendron aralioides HOM05D005472 ORTHO05D003948 2.6e-33 146.4 205 46.3
EL10Ac1g02216 Beta vulgaris HOM05D005472 ORTHO05D005897 3.4e-33 146.0 228 39.9
Ah.00g000180 Amaranthus hybridus HOM05D005472 ORTHO05D005897 7.5e-33 144.8 229 36.7
MBI09_g31922_MAGBIO Magnolia biondii HOM05D005472 ORTHO05D005897 4.9e-32 142.1 235 40.0
Sed0011447 Sechium edule HOM05D005472 ORTHO05D005897 1.8e-31 140.2 219 39.7
SHI08069 Sapria himalayana HOM05D005472 ORTHO05D005897 2.4e-31 139.8 208 40.9
C07p23450 Brassica napus HOM05D005472 ORTHO05D005897 3.1e-31 139.4 235 35.7
CSS0003502 Camellia sinensis var. sinensis HOM05D005472 ORTHO05D005897 5.4e-31 138.7 209 41.1
MD15G1012000 Malus domestica HOM05D005472 ORTHO05D005897 1.6e-30 137.1 205 43.9
arahy.Tifrunner.gnm1.ann1.MUE9LA Arachis hypogaea HOM05D000672 ORTHO05D000522 1.0e-29 134.4 221 40.3
arahy.Tifrunner.gnm1.ann1.C4XWSY Arachis hypogaea HOM05D000672 ORTHO05D000522 1.3e-29 134.0 225 38.7
Lj4A797T57 Lonicera japonica HOM05D005472 ORTHO05D005897 1.5e-28 130.6 185 44.9
TWI56G0716 Tripterygium wilfordii HOM05D005472 ORTHO05D005897 2.5e-28 129.8 167 46.1
CDE05G3315 Ceratophyllum demersum HOM05D005472 ORTHO05D005897 2.1e-27 126.7 228 36.8
Actinidia15422 Actinidia chinensis HOM05D005472 ORTHO05D005897 4.7e-27 125.6 207 40.6
CSS0003212 Camellia sinensis var. sinensis HOM05D005472 ORTHO05D005897 6.1e-27 125.2 220 38.6
AUR62041912 Chenopodium quinoa HOM05D005472 ORTHO05D005897 6.1e-27 125.2 231 35.5
HanXRQChr05g0145181 Helianthus annuus HOM05D005472 ORTHO05D005897 5.2e-26 122.1 205 37.1
Ah.11g039690 Amaranthus hybridus HOM05D005472 ORTHO05D005897 6.8e-26 121.7 227 34.4
CDE05G0022 Ceratophyllum demersum HOM05D004890 ORTHO05D005869 7.5e-25 118.2 231 35.1
DCAR_023016 Daucus carota HOM05D005472 ORTHO05D005897 9.8e-25 117.9 196 38.8
vmacro07586 Vaccinium macrocarpon HOM05D005472 ORTHO05D005897 2.9e-24 116.3 181 42.0
Lsat_1_v5_gn_9_46920 Lactuca sativa HOM05D005472 ORTHO05D005897 3.2e-23 112.8 196 36.7
vmacro21726 Vaccinium macrocarpon HOM05D005472 ORTHO05D005897 2.7e-22 109.8 173 41.0
Oeu054693.1 Olea europaea HOM05D005472 ORTHO05D005897 3.0e-21 106.3 193 37.3
HanXRQChr11g0322621 Helianthus annuus HOM05D005472 ORTHO05D005897 6.6e-21 105.1 203 31.5
Oeu007327.1 Olea europaea HOM05D005472 ORTHO05D005897 6.6e-21 105.1 189 39.2
HPP92_025683 Vanilla planifolia HOM05D005472 ORTHO05D005897 2.5e-20 103.2 223 35.0
ATR0810G127 Amborella trichopoda HOM05D005472 ORTHO05D005897 1.6e-19 100.5 224 31.7
PGR031G2226 Punica granatum HOM05D005472 ORTHO05D005897 4.0e-18 95.9 115 44.3
MSTRG.1192 Avicennia marina HOM05D005472 ORTHO05D005897 8.9e-18 94.7 168 33.9
unitig_0.g2085 Utricularia gibba HOM05D005472 ORTHO05D005897 1.5e-17 94.0 163 36.2
CAN.G1271.17 Capsicum annuum HOM05D005472 ORTHO05D005897 4.4e-17 92.4 165 38.2
SGA_v2.0_scaffold11G05917 Striga asiatica HOM05D005472 ORTHO05D005897 3.7e-16 89.4 161 37.9
Sc02g0008580 Simmondsia chinensis HOM05D005472 ORTHO05D005897 1.4e-15 87.4 189 36.5
Migut.C00835 Erythranthe guttata HOM05D005472 ORTHO05D005897 5.4e-15 85.5 164 34.8
CANSAT78G2470 Cannabis sativa HOM05D005472 ORTHO05D005897 2.0e-14 83.6 90 48.9
Os04g0117200 Oryza sativa ssp. japonica HOM05D005472 ORTHO05D005897 2.7e-14 83.2 207 31.9
Actinidia16989 Actinidia chinensis HOM05D005472 ORTHO05D005897 4.6e-14 82.4 157 36.3
ECA232G3880 Erigeron canadensis HOM05D005472 ORTHO05D005897 2.5e-12 76.6 186 26.9
Rhsim06G0021600 Rhododendron simsii HOM05D005472 ORTHO05D005897 3.3e-12 76.3 237 28.3
SalBow7G1801 Salvia bowleyana HOM05D005472 ORTHO05D005897 4.3e-12 75.9 221 26.2
BcaB08g36328 Brassica carinata HOM05D005472 ORTHO05D005897 5.6e-12 75.5 133 37.6
Aqoxy5G01787 Aquilegia oxysepala HOM05D000073 ORTHO05D000033 9.5e-12 74.7 169 30.2
MSTRG.25248 Avicennia marina HOM05D005472 ORTHO05D005897 6.2e-11 72.0 81 48.1
SEGI_34762 Sequoiadendron giganteum HOM05D005472 ORTHO05D005897 6.2e-11 72.0 236 22.0
Aqoxy2G01737 Aquilegia oxysepala HOM05D017957 ORTHO05D005897 2.6e-09 66.6 221 25.3
MBI09_g43704_MAGBIO Magnolia biondii HOM05D005472 ORTHO05D005897 2.6e-09 66.6 95 42.1
Zm00001eb121210 Zea mays HOM05D005472 ORTHO05D005897 2.2e-08 63.5 203 31.0
MD00G1092800 Malus domestica HOM05D005472 ORTHO05D005897 8.3e-08 61.6 80 41.2
BcaB08g37342 Brassica carinata HOM05D005472 ORTHO05D005897 5.4e-07 58.9 56 57.1
SGA_v2.0_scaffold92G28230 Striga asiatica HOM05D005472 ORTHO05D005897 9.2e-07 58.2 95 34.7
SMO351G0278 Selaginella moellendorffii HOM05D029214 ORTHO05D026603 1.2e-06 57.8 224 23.7


User provided reference genes

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