Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr2.2929 Acer truncatum HOM05D004171 ORTHO05D004983 1.1e-158 563.1 276 100.0
Ciclev10009152m.g Citrus clementina HOM05D004171 ORTHO05D004983 8.0e-120 434.1 278 76.6
CSS0009250 Camellia sinensis var. sinensis HOM05D004171 ORTHO05D004983 4.5e-115 418.3 273 74.0
TAR629G3225 Trochodendron aralioides HOM05D004171 ORTHO05D004983 4.5e-115 418.3 276 73.2
TAR627G1073 Trochodendron aralioides HOM05D004171 ORTHO05D004983 2.9e-114 415.6 276 72.1
Thecc.07G070400 Theobroma cacao HOM05D004171 ORTHO05D004983 3.8e-114 415.2 275 73.1
Dinv22359 Davidia involucrata HOM05D004171 ORTHO05D004983 6.6e-114 414.5 276 73.6
Duzib213G0518 Durio zibethinus HOM05D004171 ORTHO05D004983 8.6e-114 414.1 274 74.8
Cc05_g12750 Coffea canephora HOM05D004171 ORTHO05D004983 1.1e-113 413.7 276 72.1
COL.COLO4_09488 Corchorus olitorius HOM05D004171 ORTHO05D004983 1.5e-113 413.3 273 72.2
Duzib170G1088 Durio zibethinus HOM05D004171 ORTHO05D004983 1.9e-113 412.9 276 72.8
Actinidia09971 Actinidia chinensis HOM05D004171 ORTHO05D004983 2.5e-113 412.5 276 73.2
Nitab4.5_0000297g0160 Nicotiana tabacum HOM05D004171 ORTHO05D004983 5.6e-113 411.4 276 71.4
Actinidia05147 Actinidia chinensis HOM05D004171 ORTHO05D004983 7.3e-113 411.0 276 73.2
Potri.011G126300 Populus trichocarpa HOM05D004171 ORTHO05D004983 7.3e-113 411.0 276 72.1
PGSC0003DMG400019283 Solanum tuberosum HOM05D004171 ORTHO05D004983 7.3e-113 411.0 276 70.3
Nitab4.5_0009110g0010 Nicotiana tabacum HOM05D004171 ORTHO05D004983 1.6e-112 409.8 276 71.0
Sabra11G0111100 Salix brachista HOM05D004171 ORTHO05D004983 1.6e-112 409.8 276 71.7
Lj3g0003583 Lotus japonicus HOM05D004171 ORTHO05D004983 2.1e-112 409.5 276 72.1
Duzib268G0239 Durio zibethinus HOM05D004171 ORTHO05D004983 3.6e-112 408.7 276 73.2
Solyc07g063620.3 Solanum lycopersicum HOM05D004171 ORTHO05D004983 6.1e-112 407.9 276 70.3
Rhsim06G0192400 Rhododendron simsii HOM05D004171 ORTHO05D004983 8.0e-112 407.5 274 73.7
Sopen07g031800 Solanum pennellii HOM05D004171 ORTHO05D004983 8.0e-112 407.5 276 70.3
Manes.15G082500 Manihot esculenta HOM05D004171 ORTHO05D004983 1.8e-111 406.4 279 70.3
Medtr8g464760 Medicago truncatula HOM05D004171 ORTHO05D004983 1.8e-111 406.4 277 71.1
CiPaw.11G177500 Carya illinoinensis HOM05D004171 ORTHO05D004983 3.0e-111 405.6 275 72.7
Cfa020499 Carpinus fangiana HOM05D004171 ORTHO05D004983 4.0e-111 405.2 278 72.3
RcHm_v2.0_Chr5g0036121 Rosa chinensis HOM05D004171 ORTHO05D004983 1.2e-110 403.7 275 69.5
Glyma.12G134300 Glycine max HOM05D004171 ORTHO05D004983 1.5e-110 403.3 279 70.3
Gohir.A04G025600 Gossypium hirsutum HOM05D004171 ORTHO05D004983 2.6e-110 402.5 276 72.8
Gorai.009G430400 Gossypium raimondii HOM05D004171 ORTHO05D004983 2.6e-110 402.5 276 72.5
MD03G1217700 Malus domestica HOM05D004171 ORTHO05D004983 2.6e-110 402.5 275 72.0
Gohir.D05G362300 Gossypium hirsutum HOM05D004171 ORTHO05D004983 3.4e-110 402.1 276 72.5
arahy.Tifrunner.gnm1.ann1.SXKR4Z Arachis hypogaea HOM05D004171 ORTHO05D004983 5.8e-110 401.4 276 69.6
Eucgr.F01074 Eucalyptus grandis HOM05D004171 ORTHO05D004983 7.5e-110 401.0 277 72.2
MD11G1235500 Malus domestica HOM05D004171 ORTHO05D004983 7.5e-110 401.0 278 71.2
Haze_09543 Corylus avellana HOM05D004171 ORTHO05D004983 1.3e-109 400.2 278 70.9
Cpa.g.sc12.36 Carica papaya HOM05D004171 ORTHO05D004983 1.7e-109 399.8 276 72.5
Dinv08350 Davidia involucrata HOM05D004171 ORTHO05D004983 1.7e-109 399.8 240 78.8
Gorai.013G165800 Gossypium raimondii HOM05D004171 ORTHO05D004983 2.2e-109 399.4 276 71.0
Hma1.2p1_1176F.1_g264170 Hydrangea macrophylla HOM05D004171 ORTHO05D004983 2.2e-109 399.4 272 71.7
Gohir.D13G148000 Gossypium hirsutum HOM05D004171 ORTHO05D004983 2.9e-109 399.1 276 71.0
Peaxi162Scf01216g00047 Petunia axillaris HOM05D004171 ORTHO05D004983 3.7e-109 398.7 276 69.6
MSTRG.12927 Avicennia marina HOM05D004171 ORTHO05D004983 4.9e-109 398.3 276 68.5
Prupe.4G191500 Prunus persica HOM05D004171 ORTHO05D004983 8.3e-109 397.5 275 71.3
Manes.03G117000 Manihot esculenta HOM05D004171 ORTHO05D004983 1.4e-108 396.7 279 69.2
Psat4g140880 Pisum sativum HOM05D004171 ORTHO05D004983 1.4e-108 396.7 276 69.2
Aqoxy1G02716 Aquilegia oxysepala HOM05D004171 ORTHO05D004983 1.8e-108 396.4 277 69.0
ClCG11G018550 Citrullus lanatus HOM05D004171 ORTHO05D004983 1.8e-108 396.4 278 70.9
PSO675G0635 Papaver somniferum HOM05D004171 ORTHO05D004983 4.1e-108 395.2 276 67.0
Phvul.011G138400 Phaseolus vulgaris HOM05D004171 ORTHO05D004983 5.4e-108 394.8 279 68.8
FAN11G0158 Fragaria x ananassa HOM05D004171 ORTHO05D004983 7.0e-108 394.4 281 69.8
FAN16G3093 Fragaria x ananassa HOM05D004171 ORTHO05D004983 9.2e-108 394.0 276 69.9
Ah.04g165380 Amaranthus hybridus HOM05D004171 ORTHO05D004983 1.2e-107 393.7 278 68.7
Gohir.A13G143300 Gossypium hirsutum HOM05D004171 ORTHO05D004983 1.2e-107 393.7 276 70.7
CAN.G162.108 Capsicum annuum HOM05D004171 ORTHO05D004983 2.7e-107 392.5 276 68.1
FAN25G0362 Fragaria x ananassa HOM05D004171 ORTHO05D004983 4.6e-107 391.7 276 68.8
VMungo1127G0586 Vigna mungo HOM05D004171 ORTHO05D004983 6.0e-107 391.3 279 68.8
CiPaw.12G123300 Carya illinoinensis HOM05D004171 ORTHO05D004983 1.0e-106 390.6 278 70.5
QL08p017518 Quercus lobata HOM05D004171 ORTHO05D004983 1.3e-106 390.2 279 69.9
PSO541G5656 Papaver somniferum HOM05D004171 ORTHO05D004983 5.0e-106 388.3 276 66.7
FvH4_3g21110 Fragaria vesca HOM05D004171 ORTHO05D004983 6.6e-106 387.9 276 68.5
Oeu006766.1 Olea europaea HOM05D004171 ORTHO05D004983 1.1e-105 387.1 276 69.6
TPR.G25226 Trifolium pratense HOM05D004171 ORTHO05D004983 1.5e-105 386.7 278 67.6
TWI38G2120 Tripterygium wilfordii HOM05D004171 ORTHO05D004983 3.3e-105 385.6 276 69.2
MSTRG.14383 Avicennia marina HOM05D004171 ORTHO05D004983 4.3e-105 385.2 276 67.8
AUR62015590 Chenopodium quinoa HOM05D004171 ORTHO05D004983 5.6e-105 384.8 276 68.1
PGR083G0998 Punica granatum HOM05D004171 ORTHO05D004983 7.3e-105 384.4 276 67.4
THA.LOC104799905 Tarenaya hassleriana HOM05D004171 ORTHO05D004983 9.5e-105 384.0 284 67.3
AUR62029303 Chenopodium quinoa HOM05D004171 ORTHO05D004983 1.6e-104 383.3 277 68.2
MELO3C018184.2 Cucumis melo HOM05D004171 ORTHO05D004983 2.8e-104 382.5 280 69.3
Glyma.12G218800 Glycine max HOM05D004171 ORTHO05D004983 2.8e-104 382.5 277 67.5
MBI02_g13230_MAGBIO Magnolia biondii HOM05D004171 ORTHO05D004983 2.8e-104 382.5 276 66.3
CSS0026220 Camellia sinensis var. sinensis HOM05D004171 ORTHO05D004983 6.2e-104 381.3 270 70.0
PGR031G0147 Punica granatum HOM05D004171 ORTHO05D004983 1.4e-103 380.2 283 68.9
vmacro11810 Vaccinium macrocarpon HOM05D004171 ORTHO05D004983 2.3e-103 379.4 273 68.9
GSVIVG01014444001 Vitis vinifera HOM05D004171 ORTHO05D004983 4.0e-103 378.6 273 67.4
CsaV3_3G044320 Cucumis sativus L. HOM05D004171 ORTHO05D004983 2.0e-102 376.3 279 68.1
THA.LOC104813397 Tarenaya hassleriana HOM05D004171 ORTHO05D004983 2.0e-102 376.3 294 66.3
Sed0025378 Sechium edule HOM05D004171 ORTHO05D004983 7.5e-102 374.4 276 67.4
arahy.Tifrunner.gnm1.ann1.H2QIWP Arachis hypogaea HOM05D004171 ORTHO05D004983 9.8e-102 374.0 270 65.9
arahy.Tifrunner.gnm1.ann1.UD3S3B Arachis hypogaea HOM05D004171 ORTHO05D004983 9.8e-102 374.0 270 65.9
EL10Ac4g08047 Beta vulgaris HOM05D004171 ORTHO05D004983 1.7e-101 373.2 308 62.0
Lalb_Chr19g0134521 Lupinus albus HOM05D004171 ORTHO05D004983 2.2e-101 372.9 277 65.3
SGA_v2.0_scaffold9G04958 Striga asiatica HOM05D004171 ORTHO05D004983 8.3e-101 370.9 276 64.5
arahy.Tifrunner.gnm1.ann1.EUN1K4 Arachis hypogaea HOM05D004171 ORTHO05D004983 1.4e-100 370.2 234 72.6
Hund23371 Selenicereus undatus HOM05D004171 ORTHO05D004983 1.4e-100 370.2 276 63.4
TWI39G0675 Tripterygium wilfordii HOM05D004171 ORTHO05D004983 1.4e-100 370.2 277 67.9
Aa31LG3G10200 Aethionema arabicum HOM05D004171 ORTHO05D004983 2.4e-100 369.4 285 64.6
MBI18_g19831_MAGBIO Magnolia biondii HOM05D004171 ORTHO05D004983 2.4e-100 369.4 276 62.3
SalBow7G4117 Salvia bowleyana HOM05D004171 ORTHO05D004983 2.4e-100 369.4 277 66.1
Sed0003677 Sechium edule HOM05D004171 ORTHO05D004983 2.4e-100 369.4 276 64.9
Sp6g16280 Schrenkiella parvula HOM05D004171 ORTHO05D004983 5.4e-100 368.2 285 64.2
BcaB05g22115 Brassica carinata HOM05D004171 ORTHO05D004983 7.0e-100 367.9 284 64.4
Migut.H01900 Erythranthe guttata HOM05D004171 ORTHO05D004983 9.2e-100 367.5 276 65.2
Thhalv10014333m.g Eutrema salsugineum HOM05D004171 ORTHO05D004983 1.2e-99 367.1 285 64.2
BraA02t06113Z Brassica rapa HOM05D004171 ORTHO05D004983 1.6e-99 366.7 285 64.6
AT5G54240 Arabidopsis thaliana HOM05D004171 ORTHO05D004983 3.5e-99 365.5 287 63.4
C09p44520 Brassica napus HOM05D004171 ORTHO05D004983 3.5e-99 365.5 285 64.2
BraA10t43247Z Brassica rapa HOM05D004171 ORTHO05D004983 3.5e-99 365.5 285 64.2
BcaC04g20360 Brassica carinata HOM05D004171 ORTHO05D004983 4.6e-99 365.2 285 63.9
A02p10500 Brassica napus HOM05D004171 ORTHO05D004983 4.6e-99 365.2 285 64.2
BolC9t57324H Brassica oleracea HOM05D004171 ORTHO05D004983 4.6e-99 365.2 285 63.9
CARHR267500 Cardamine hirsuta HOM05D004171 ORTHO05D004983 4.6e-99 365.2 286 64.3
Lalb_Chr01g0017051 Lupinus albus HOM05D004171 ORTHO05D004983 4.6e-99 365.2 274 63.9
A10p11530 Brassica napus HOM05D004171 ORTHO05D004983 3.0e-98 362.5 285 63.9
BcaB08g35778 Brassica carinata HOM05D004171 ORTHO05D004983 3.9e-98 362.1 289 64.4
MBI18_g27681_MAGBIO Magnolia biondii HOM05D004171 ORTHO05D004983 3.9e-98 362.1 295 59.7
AL8G29560 Arabidopsis lyrata HOM05D004171 ORTHO05D004983 5.0e-98 361.7 286 62.9
CANSAT11G0840 Cannabis sativa HOM05D004171 ORTHO05D004983 8.6e-98 360.9 276 67.4
Thhalv10025946m.g Eutrema salsugineum HOM05D004171 ORTHO05D004983 8.6e-98 360.9 284 62.0
Sp7g25280 Schrenkiella parvula HOM05D004171 ORTHO05D004983 3.3e-97 359.0 285 60.4
Lj1A854T34 Lonicera japonica HOM05D004171 ORTHO05D004983 4.3e-97 358.6 276 65.6
ATR0693G292 Amborella trichopoda HOM05D004171 ORTHO05D004983 5.6e-97 358.2 278 61.5
HanXRQChr02g0031371 Helianthus annuus HOM05D004171 ORTHO05D004983 1.2e-96 357.1 273 63.4
AL7G25450 Arabidopsis lyrata HOM05D004171 ORTHO05D004983 1.6e-96 356.7 287 61.7
AT4G27350 Arabidopsis thaliana HOM05D004171 ORTHO05D004983 1.6e-96 356.7 285 60.7
BcaC09g50581 Brassica carinata HOM05D004171 ORTHO05D004983 4.7e-96 355.1 290 62.1
BolC1t02294H Brassica oleracea HOM05D004171 ORTHO05D004983 4.7e-96 355.1 290 62.1
BcaNung03036 Brassica carinata HOM05D004171 ORTHO05D004983 8.1e-96 354.4 288 60.8
BcaNung05201 Brassica carinata HOM05D004171 ORTHO05D004983 8.1e-96 354.4 288 60.8
VMungo1080G1500 Vigna mungo HOM05D004171 ORTHO05D004983 8.1e-96 354.4 276 62.7
BcaNung05200 Brassica carinata HOM05D004171 ORTHO05D004983 1.4e-95 353.6 287 61.0
Lsat_1_v5_gn_7_105981 Lactuca sativa HOM05D004171 ORTHO05D004983 1.4e-95 353.6 275 61.1
Eucgr.F03360 Eucalyptus grandis HOM05D004171 ORTHO05D004983 1.8e-95 353.2 234 73.9
Carub.0008s1458 Capsella rubella HOM05D004171 ORTHO05D004983 2.3e-95 352.8 286 63.6
Sc16g0006730 Simmondsia chinensis HOM05D004171 ORTHO05D004983 2.3e-95 352.8 230 70.0
C01p23480 Brassica napus HOM05D004171 ORTHO05D004983 3.1e-95 352.4 290 61.4
Carub.0007s1352 Capsella rubella HOM05D004171 ORTHO05D004983 6.8e-95 351.3 287 61.0
A01p18530 Brassica napus HOM05D004171 ORTHO05D004983 1.5e-94 350.1 287 59.9
BraA01t01802Z Brassica rapa HOM05D004171 ORTHO05D004983 1.5e-94 350.1 287 59.9
CARHR235000 Cardamine hirsuta HOM05D004171 ORTHO05D004983 1.5e-94 350.1 286 60.1
DCAR_009989 Daucus carota HOM05D004171 ORTHO05D004983 2.6e-94 349.4 235 68.9
BcaC09g50583 Brassica carinata HOM05D002586 ORTHO05D007009 4.1e-92 342.0 278 62.6
CDE02G1151 Ceratophyllum demersum HOM05D004171 ORTHO05D004983 1.2e-91 340.5 273 60.4
unitig_699.g19211 Utricularia gibba HOM05D004171 ORTHO05D004983 8.6e-90 334.3 276 60.5
Gorai.004G029100 Gossypium raimondii HOM05D004171 ORTHO05D004983 1.9e-89 333.2 273 63.0
Gohir.A08G020900 Gossypium hirsutum HOM05D004171 ORTHO05D004983 2.5e-89 332.8 273 62.6
ECA236G3492 Erigeron canadensis HOM05D004171 ORTHO05D004983 1.4e-87 327.0 277 58.5
Aa31LG5G10160 Aethionema arabicum HOM05D002586 ORTHO05D007009 4.0e-87 325.5 279 59.1
FAN21G0927 Fragaria x ananassa HOM05D004171 ORTHO05D004983 4.0e-87 325.5 245 66.1
HPP92_012360 Vanilla planifolia HOM05D004171 ORTHO05D004983 2.3e-82 309.7 278 55.4
DCAR_008697 Daucus carota HOM05D004171 ORTHO05D004983 8.7e-82 307.8 254 58.7
CDE01G0586 Ceratophyllum demersum HOM05D004171 ORTHO05D004983 8.1e-80 301.2 245 61.2
Os07g0559400 Oryza sativa ssp. japonica HOM05D004171 ORTHO05D004983 1.2e-78 297.4 286 53.5
Potri.001G408001 Populus trichocarpa HOM05D004171 ORTHO05D004983 1.7e-77 293.5 185 74.1
Aqoxy1G03898 Aquilegia oxysepala HOM05D004171 ORTHO05D004983 2.9e-77 292.7 263 51.3
Zm00001eb324170 Zea mays HOM05D004171 ORTHO05D004983 4.9e-77 292.0 280 53.9
CAN.G847.1 Capsicum annuum HOM05D004171 ORTHO05D004983 2.5e-73 279.6 200 66.5
Mapoly0102s0009 Marchantia polymorpha HOM05D004171 ORTHO05D004983 4.2e-68 262.3 276 46.0
SEGI_27365 Sequoiadendron giganteum HOM05D004171 ORTHO05D004983 7.4e-65 251.5 242 52.9
SMO116G0055 Selaginella moellendorffii HOM05D004171 ORTHO05D004983 1.5e-62 243.8 233 48.1
Oeu019367.1 Olea europaea HOM05D004171 ORTHO05D004983 2.6e-62 243.0 158 75.3
CAN.G187.6 Capsicum annuum HOM05D004171 ORTHO05D004983 2.2e-61 240.0 186 61.8
Nn1g03875 Nelumbo nucifera HOM05D004171 ORTHO05D004983 1.1e-60 237.7 185 61.6
Pp3c3_11900 Physcomitrium patens HOM05D004171 ORTHO05D004983 7.9e-59 231.5 282 42.2
Ca_22993_v3 Cicer arietinum L. HOM05D004171 ORTHO05D004983 3.7e-56 222.6 159 65.4
Nn1g06780 Nelumbo nucifera HOM05D004171 ORTHO05D004983 4.8e-56 222.2 160 68.8
Gohir.D08G031500 Gossypium hirsutum HOM05D004171 ORTHO05D004983 3.2e-52 209.5 176 61.9
CDE12G0832 Ceratophyllum demersum HOM05D004171 ORTHO05D004983 1.6e-48 197.2 224 47.8
AagrBONN_evm.TU.Sc2ySwM_228.913 Anthoceros agrestis HOM05D004171 ORTHO05D004983 5.9e-46 188.7 205 47.3
CBR_g24077 Chara braunii HOM05D004171 ORTHO05D004983 2.0e-41 173.7 235 37.9
C02p17300 Brassica napus HOM05D004171 ORTHO05D004983 1.0e-37 161.4 138 61.6
BolC2t07830H Brassica oleracea HOM05D004171 ORTHO05D004983 1.7e-37 160.6 138 61.6
BolC2t07836H Brassica oleracea HOM05D004171 ORTHO05D004983 1.7e-37 160.6 138 61.6
BcaNung05202 Brassica carinata HOM05D004171 ORTHO05D004983 4.4e-25 119.4 117 55.6
CBR_g54085 Chara braunii HOM05D000019 ORTHO05D000002 2.6e-22 110.2 117 42.7
AL9U10820 Arabidopsis lyrata HOM05D004171 ORTHO05D004983 2.6e-17 93.6 74 56.8
CDE05G1305 Ceratophyllum demersum HOM05D004171 ORTHO05D004983 4.4e-17 92.8 184 33.7


User provided reference genes

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