Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr2.2863 Acer truncatum HOM05D007566 ORTHO05D009505 9.8e-44 179.9 99 100.0
TWI39G1107 Tripterygium wilfordii HOM05D007566 ORTHO05D009505 9.2e-26 120.2 99 70.7
Ciclev10010014m.g Citrus clementina HOM05D007566 ORTHO05D009505 5.9e-25 117.5 100 70.0
Potri.001G406900 Populus trichocarpa HOM05D007566 ORTHO05D009505 5.9e-25 117.5 100 70.0
Manes.15G083200 Manihot esculenta HOM05D007566 ORTHO05D009505 1.3e-24 116.3 99 68.7
MD11G1237100 Malus domestica HOM05D007566 ORTHO05D009505 1.1e-23 113.2 99 64.6
FvH4_3g21000 Fragaria vesca HOM05D007566 ORTHO05D009505 1.5e-23 112.8 99 65.7
FAN11G3987 Fragaria x ananassa HOM05D007566 ORTHO05D009505 1.5e-23 112.8 99 65.7
Prupe.4G190300 Prunus persica HOM05D007566 ORTHO05D009505 1.9e-23 112.5 99 66.7
FAN25G3649 Fragaria x ananassa HOM05D007566 ORTHO05D009505 1.6e-22 109.4 99 63.6
Sabra16G0268300 Salix brachista HOM05D007566 ORTHO05D009505 3.6e-22 108.2 100 68.0
Sabra16G0270600 Salix brachista HOM05D007566 ORTHO05D009505 3.6e-22 108.2 100 68.0
MELO3C016554.2 Cucumis melo HOM05D007566 ORTHO05D009505 4.7e-22 107.8 100 66.0
Lj3g0013461 Lotus japonicus HOM05D007566 ORTHO05D009505 4.7e-22 107.8 100 66.0
RcHm_v2.0_Chr5g0035981 Rosa chinensis HOM05D007566 ORTHO05D009505 4.7e-22 107.8 99 63.6
Lalb_Chr25g0286741 Lupinus albus HOM05D007566 ORTHO05D009505 4.0e-21 104.8 101 60.4
CsaV3_3G005960 Cucumis sativus L. HOM05D007566 ORTHO05D009505 2.0e-20 102.4 100 65.0
CANSAT11G1965 Cannabis sativa HOM05D007566 ORTHO05D009505 5.8e-20 100.9 100 62.0
Glyma.12G219500 Glycine max HOM05D007566 ORTHO05D009505 5.8e-20 100.9 102 62.7
CiPaw.11G176600 Carya illinoinensis HOM05D007566 ORTHO05D009505 9.8e-20 100.1 100 62.0
Duzib213G0757 Durio zibethinus HOM05D007566 ORTHO05D009505 9.8e-20 100.1 101 61.4
COL.COLO4_09480 Corchorus olitorius HOM05D007566 ORTHO05D009505 1.3e-19 99.8 100 59.0
PGR083G0896 Punica granatum HOM05D007566 ORTHO05D009505 1.7e-19 99.4 100 62.0
Glyma.13G281800 Glycine max HOM05D007566 ORTHO05D009505 2.2e-19 99.0 102 61.8
Psat5g246560 Pisum sativum HOM05D007566 ORTHO05D009505 2.2e-19 99.0 101 60.4
arahy.Tifrunner.gnm1.ann1.MQ63GR Arachis hypogaea HOM05D007566 ORTHO05D009505 2.9e-19 98.6 108 59.3
Phvul.005G086000 Phaseolus vulgaris HOM05D007566 ORTHO05D009505 3.7e-19 98.2 101 59.4
THA.LOC104811846 Tarenaya hassleriana HOM05D007566 ORTHO05D009505 1.4e-18 96.3 101 59.4
TPR.G32847 Trifolium pratense HOM05D007566 ORTHO05D009505 1.4e-18 96.3 101 59.4
Medtr2g080990 Medicago truncatula HOM05D007566 ORTHO05D009505 5.4e-18 94.4 104 57.7
Thecc.07G071100 Theobroma cacao HOM05D007566 ORTHO05D009505 7.0e-18 94.0 101 60.4
arahy.Tifrunner.gnm1.ann1.YDUQ9T Arachis hypogaea HOM05D007566 ORTHO05D009505 1.6e-17 92.8 108 57.4
Gohir.D01G055900 Gossypium hirsutum HOM05D007566 ORTHO05D009505 2.0e-17 92.4 100 58.0
Gorai.002G076000 Gossypium raimondii HOM05D007566 ORTHO05D009505 3.5e-17 91.7 100 58.0
GSVIVG01014436001 Vitis vinifera HOM05D007566 ORTHO05D009505 4.6e-17 91.3 103 54.4
Ah.04g165410 Amaranthus hybridus HOM05D007566 ORTHO05D009505 6.0e-17 90.9 100 60.0
TAR627G0519 Trochodendron aralioides HOM05D007566 ORTHO05D009505 1.7e-16 89.4 100 55.0
Cpa.g.sc389.3 Carica papaya HOM05D007566 ORTHO05D009505 3.0e-16 88.6 100 57.0
ClCG10G006500 Citrullus lanatus HOM05D007566 ORTHO05D009505 3.0e-16 88.6 100 57.0
Gohir.A01G068600 Gossypium hirsutum HOM05D007566 ORTHO05D009505 3.0e-16 88.6 100 57.0
Cc05_g12690 Coffea canephora HOM05D007566 ORTHO05D009505 8.6e-16 87.0 102 54.9
Aa31LG5G10140 Aethionema arabicum HOM05D007566 ORTHO05D009505 1.1e-15 86.7 103 55.3
EL10Ac4g08058 Beta vulgaris HOM05D007566 ORTHO05D009505 1.5e-15 86.3 101 55.4
FAN21G0859 Fragaria x ananassa HOM05D007566 ORTHO05D009505 1.5e-15 86.3 99 54.5
Dinv08341 Davidia involucrata HOM05D007566 ORTHO05D009505 4.3e-15 84.7 98 55.1
Eucgr.F01078 Eucalyptus grandis HOM05D007566 ORTHO05D009505 7.3e-15 84.0 101 57.4
Oeu030434.1 Olea europaea HOM05D007566 ORTHO05D009505 4.7e-14 81.3 105 56.2
TWI38G1712 Tripterygium wilfordii HOM05D007566 ORTHO05D009505 4.7e-14 81.3 186 36.0
Nitab4.5_0000297g0110 Nicotiana tabacum HOM05D007566 ORTHO05D009505 6.2e-14 80.9 99 52.5
TAR371G0602 Trochodendron aralioides HOM05D007566 ORTHO05D009505 1.4e-13 79.7 102 52.0
BraA01t01804Z Brassica rapa HOM05D007566 ORTHO05D009505 2.3e-13 79.0 104 54.8
Rhsim06G0192900 Rhododendron simsii HOM05D007566 ORTHO05D009505 2.3e-13 79.0 104 54.8
Migut.M01859 Erythranthe guttata HOM05D007566 ORTHO05D009505 8.9e-13 77.0 100 53.0
Sc16g0006770 Simmondsia chinensis HOM05D007566 ORTHO05D009505 8.9e-13 77.0 99 50.5
DCAR_009984 Daucus carota HOM05D007566 ORTHO05D009505 1.2e-12 76.6 103 52.4
Hund23375 Selenicereus undatus HOM05D007566 ORTHO05D009505 1.2e-12 76.6 105 49.5
Sp7g25310 Schrenkiella parvula HOM05D007566 ORTHO05D009505 1.5e-12 76.3 103 52.4
A01p18560 Brassica napus HOM05D007566 ORTHO05D009505 2.0e-12 75.9 105 52.4
BcaNung07200 Brassica carinata HOM05D007566 ORTHO05D009505 2.6e-12 75.5 105 52.4
C01p23510 Brassica napus HOM05D007566 ORTHO05D009505 2.6e-12 75.5 105 52.4
BolC1t02296H Brassica oleracea HOM05D007566 ORTHO05D009505 2.6e-12 75.5 105 52.4
Lsat_1_v5_gn_5_6820 Lactuca sativa HOM05D007566 ORTHO05D009505 2.6e-12 75.5 100 52.0
Solyc07g063575.1 Solanum lycopersicum HOM05D007566 ORTHO05D009505 2.6e-12 75.5 100 54.0
Sopen07g031760 Solanum pennellii HOM05D007566 ORTHO05D009505 2.6e-12 75.5 100 54.0
PSO541G1909 Papaver somniferum HOM05D007566 ORTHO05D009505 3.4e-12 75.1 101 46.5
PGSC0003DMG401019249 Solanum tuberosum HOM05D007566 ORTHO05D009505 7.5e-12 73.9 99 51.5
CDE05G3101 Ceratophyllum demersum HOM05D007566 ORTHO05D009505 9.9e-12 73.6 101 50.5
Actinidia39409 Actinidia chinensis HOM05D007566 ORTHO05D009505 1.3e-11 73.2 102 51.0
ECA246G4377 Erigeron canadensis HOM05D007566 ORTHO05D009505 3.7e-11 71.6 101 49.5
Hma1.2p1_3251F.1_g334500 Hydrangea macrophylla HOM05D007566 ORTHO05D009505 4.9e-11 71.2 106 51.9
PSO675G4296 Papaver somniferum HOM05D007566 ORTHO05D009505 8.3e-11 70.5 101 45.5
Zm00001eb106900 Zea mays HOM05D007566 ORTHO05D009505 1.1e-10 70.1 111 47.7
Aqoxy1G02746 Aquilegia oxysepala HOM05D007566 ORTHO05D009505 3.2e-10 68.6 99 51.5
BcaNung03032 Brassica carinata HOM05D007566 ORTHO05D009505 5.4e-10 67.8 104 50.0
GSVIVG01014434001 Vitis vinifera HOM05D007566 ORTHO05D009505 5.4e-10 67.8 90 48.9
HanXRQChr05g0151621 Helianthus annuus HOM05D007566 ORTHO05D009505 7.1e-10 67.4 101 48.5
SGA_v2.0_scaffold73G24317 Striga asiatica HOM05D007566 ORTHO05D009505 7.1e-10 67.4 120 43.3
AUR62015600 Chenopodium quinoa HOM05D007566 ORTHO05D009505 7.8e-09 63.9 103 44.7
Nitab4.5_0008686g0030 Nicotiana tabacum HOM05D007566 ORTHO05D009505 2.3e-08 62.4 99 44.4
unitig_0.g2051 Utricularia gibba HOM05D007566 ORTHO05D009505 6.6e-08 60.8 107 46.7
Nn1g03914 Nelumbo nucifera HOM05D007566 ORTHO05D009505 8.6e-08 60.5 100 45.0
vmacro11813 Vaccinium macrocarpon HOM05D007566 ORTHO05D009505 8.6e-08 60.5 56 64.3
VMungo0647G1906 Vigna mungo HOM05D007566 ORTHO05D009505 1.9e-07 59.3 53 62.3
CARHR235050 Cardamine hirsuta HOM05D007566 ORTHO05D009505 7.3e-07 57.4 108 44.4
Os07g0562900 Oryza sativa ssp. japonica HOM05D007566 ORTHO05D009505 9.5e-07 57.0 112 43.8
MSTRG.15205 Avicennia marina HOM05D007566 ORTHO05D009505 4.7e-06 54.7 104 45.2
Thhalv10026547m.g Eutrema salsugineum HOM05D007566 ORTHO05D009505 4.7e-06 54.7 135 40.0
Peaxi162Scf01216g00052 Petunia axillaris HOM05D007566 ORTHO05D009505 4.7e-06 54.7 62 53.2


User provided reference genes

Program Settings