Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr2.2812 Acer truncatum HOM05D004279 ORTHO05D004979 5.1e-102 374.4 186 100.0
TWI38G1973 Tripterygium wilfordii HOM05D004279 ORTHO05D004979 1.5e-66 256.5 143 88.8
TWI39G0076 Tripterygium wilfordii HOM05D004279 ORTHO05D004979 2.0e-66 256.1 143 88.8
Ciclev10009067m.g Citrus clementina HOM05D004279 ORTHO05D004979 2.6e-66 255.8 143 88.8
Cpa.g.sc80.101 Carica papaya HOM05D004279 ORTHO05D004979 1.0e-65 253.8 143 87.4
Gohir.A01G067200 Gossypium hirsutum HOM05D004279 ORTHO05D004979 1.3e-65 253.4 143 86.7
Gohir.D01G054400 Gossypium hirsutum HOM05D004279 ORTHO05D004979 1.3e-65 253.4 143 86.7
Gorai.002G074300 Gossypium raimondii HOM05D004279 ORTHO05D004979 1.3e-65 253.4 143 86.7
COL.COLO4_09461 Corchorus olitorius HOM05D004279 ORTHO05D004979 5.0e-65 251.5 143 86.7
Potri.001G405200 Populus trichocarpa HOM05D004279 ORTHO05D004979 6.5e-65 251.1 143 86.7
Sabra16G0266200 Salix brachista HOM05D004279 ORTHO05D004979 8.5e-65 250.8 143 87.4
Gohir.A04G027700 Gossypium hirsutum HOM05D004279 ORTHO05D004979 2.5e-64 249.2 143 85.3
Gohir.D05G360400 Gossypium hirsutum HOM05D004279 ORTHO05D004979 2.5e-64 249.2 143 85.3
Gorai.009G432300 Gossypium raimondii HOM05D004279 ORTHO05D004979 2.5e-64 249.2 143 85.3
Duzib268G0928 Durio zibethinus HOM05D004279 ORTHO05D004979 4.2e-64 248.4 143 85.3
Potri.011G128300 Populus trichocarpa HOM05D004279 ORTHO05D004979 5.5e-64 248.1 143 86.0
Duzib213G0014 Durio zibethinus HOM05D004279 ORTHO05D004979 2.1e-63 246.1 143 84.6
Thecc.07G074500 Theobroma cacao HOM05D004279 ORTHO05D004979 3.6e-63 245.4 143 84.6
QL08p019074 Quercus lobata HOM05D004279 ORTHO05D004979 1.4e-62 243.4 143 83.9
Eucgr.F03342 Eucalyptus grandis HOM05D004279 ORTHO05D004979 3.0e-62 242.3 143 81.1
BcaB05g22132 Brassica carinata HOM05D004279 ORTHO05D004979 5.1e-62 241.5 143 81.8
THA.LOC104810491 Tarenaya hassleriana HOM05D004279 ORTHO05D004979 5.1e-62 241.5 143 83.2
A02p10310 Brassica napus HOM05D004279 ORTHO05D004979 1.1e-61 240.4 143 81.1
BraA02t06098Z Brassica rapa HOM05D004279 ORTHO05D004979 1.1e-61 240.4 143 81.1
PGR031G2155 Punica granatum HOM05D004279 ORTHO05D004979 1.1e-61 240.4 143 82.5
CANSAT11G2237 Cannabis sativa HOM05D004279 ORTHO05D004979 1.5e-61 240.0 143 80.4
THA.LOC104799915 Tarenaya hassleriana HOM05D004279 ORTHO05D004979 1.5e-61 240.0 144 82.6
CARHR267680 Cardamine hirsuta HOM05D004279 ORTHO05D004979 2.0e-61 239.6 143 80.4
BcaC03g14314 Brassica carinata HOM05D004279 ORTHO05D004979 2.5e-61 239.2 143 80.4
BolC2t07801H Brassica oleracea HOM05D004279 ORTHO05D004979 2.5e-61 239.2 143 80.4
Sp6g16410 Schrenkiella parvula HOM05D004279 ORTHO05D004979 2.5e-61 239.2 143 81.1
Prupe.4G187700 Prunus persica HOM05D004279 ORTHO05D004979 7.4e-61 237.7 144 82.6
Ca_01814_v3 Cicer arietinum L. HOM05D004279 ORTHO05D004979 9.7e-61 237.3 143 81.1
Ca_30536_v3 Cicer arietinum L. HOM05D004279 ORTHO05D004979 9.7e-61 237.3 143 81.1
AL8G29740 Arabidopsis lyrata HOM05D004279 ORTHO05D004979 1.3e-60 236.9 143 80.4
C02p17040 Brassica napus HOM05D004279 ORTHO05D004979 1.3e-60 236.9 143 79.7
ClCG11G018340 Citrullus lanatus HOM05D004279 ORTHO05D004979 1.3e-60 236.9 143 81.1
Hma1.2p1_1274F.1_g271930 Hydrangea macrophylla HOM05D004279 ORTHO05D004979 1.3e-60 236.9 136 85.3
Dinv22371 Davidia involucrata HOM05D004279 ORTHO05D004979 1.7e-60 236.5 136 84.6
AT5G54400 Arabidopsis thaliana HOM05D004279 ORTHO05D004979 2.8e-60 235.7 143 79.7
Thhalv10021257m.g Eutrema salsugineum HOM05D004279 ORTHO05D004979 3.7e-60 235.3 143 80.4
Sp3g13790 Schrenkiella parvula HOM05D004279 ORTHO05D004979 3.7e-60 235.3 143 80.4
Sed0000911 Sechium edule HOM05D004279 ORTHO05D004979 3.7e-60 235.3 143 80.4
Manes.15G084500 Manihot esculenta HOM05D004279 ORTHO05D004979 4.8e-60 235.0 143 81.8
TPR.G38955 Trifolium pratense HOM05D004279 ORTHO05D004979 4.8e-60 235.0 143 79.7
BcaB04g20920 Brassica carinata HOM05D004279 ORTHO05D004979 8.2e-60 234.2 143 79.7
BcaB06g29588 Brassica carinata HOM05D004279 ORTHO05D004979 8.2e-60 234.2 143 79.7
BcaC05g28964 Brassica carinata HOM05D004279 ORTHO05D004979 8.2e-60 234.2 143 79.7
BcaC09g48518 Brassica carinata HOM05D004279 ORTHO05D004979 8.2e-60 234.2 143 79.7
A05p33880 Brassica napus HOM05D004279 ORTHO05D004979 8.2e-60 234.2 143 79.7
C05p51590 Brassica napus HOM05D004279 ORTHO05D004979 8.2e-60 234.2 143 79.7
BolC1t04855H Brassica oleracea HOM05D004279 ORTHO05D004979 8.2e-60 234.2 143 79.7
BolC5t33846H Brassica oleracea HOM05D004279 ORTHO05D004979 8.2e-60 234.2 143 79.7
Manes.03G114800 Manihot esculenta HOM05D004279 ORTHO05D004979 8.2e-60 234.2 143 81.1
Phvul.005G085300 Phaseolus vulgaris HOM05D004279 ORTHO05D004979 8.2e-60 234.2 143 79.0
VMungo1080G0833 Vigna mungo HOM05D004279 ORTHO05D004979 8.2e-60 234.2 143 79.0
Carub.0008s1473 Capsella rubella HOM05D004279 ORTHO05D004979 1.1e-59 233.8 143 79.7
Lj3g0025503 Lotus japonicus HOM05D004279 ORTHO05D004979 1.1e-59 233.8 143 79.0
BraA05t22210Z Brassica rapa HOM05D004279 ORTHO05D004979 1.4e-59 233.4 143 79.7
THA.LOC104818054 Tarenaya hassleriana HOM05D004279 ORTHO05D004979 1.4e-59 233.4 143 80.4
Cfa020528 Carpinus fangiana HOM05D004279 ORTHO05D004979 1.8e-59 233.0 144 80.6
FAN16G2997 Fragaria x ananassa HOM05D004279 ORTHO05D004979 1.8e-59 233.0 143 81.1
Lj1A851T62 Lonicera japonica HOM05D004279 ORTHO05D004979 1.8e-59 233.0 136 83.1
MD03G1221800 Malus domestica HOM05D004279 ORTHO05D004979 1.8e-59 233.0 144 81.2
AT3G15530 Arabidopsis thaliana HOM05D004279 ORTHO05D004979 2.4e-59 232.6 143 79.0
Carub.0003s1526 Capsella rubella HOM05D004279 ORTHO05D004979 2.4e-59 232.6 143 79.0
Haze_09505 Corylus avellana HOM05D004279 ORTHO05D004979 2.4e-59 232.6 144 80.6
MELO3C018223.2 Cucumis melo HOM05D004279 ORTHO05D004979 2.4e-59 232.6 143 79.7
CsaV3_3G044480 Cucumis sativus L. HOM05D004279 ORTHO05D004979 2.4e-59 232.6 143 79.7
Glyma.12G220600 Glycine max HOM05D004279 ORTHO05D004979 2.4e-59 232.6 143 79.0
Psat4g016400 Pisum sativum HOM05D004279 ORTHO05D004979 2.4e-59 232.6 143 79.7
CARHR090590 Cardamine hirsuta HOM05D004279 ORTHO05D004979 3.1e-59 232.3 143 79.0
FvH4_3g20760 Fragaria vesca HOM05D004279 ORTHO05D004979 3.1e-59 232.3 143 81.1
FAN11G1457 Fragaria x ananassa HOM05D004279 ORTHO05D004979 3.1e-59 232.3 143 81.1
Medtr2g080130 Medicago truncatula HOM05D004279 ORTHO05D004979 4.1e-59 231.9 143 79.0
RcHm_v2.0_Chr5g0034991 Rosa chinensis HOM05D004279 ORTHO05D004979 4.1e-59 231.9 143 81.1
AL3G28110 Arabidopsis lyrata HOM05D004279 ORTHO05D004979 9.1e-59 230.7 143 78.3
CiPaw.11G174600 Carya illinoinensis HOM05D004279 ORTHO05D004979 9.1e-59 230.7 144 79.9
FAN21G3274 Fragaria x ananassa HOM05D004279 ORTHO05D004979 9.1e-59 230.7 143 80.4
HanXRQChr05g0156561 Helianthus annuus HOM05D004279 ORTHO05D004979 9.1e-59 230.7 143 81.1
Aa31LG3G10340 Aethionema arabicum HOM05D004279 ORTHO05D004979 1.2e-58 230.3 145 77.2
FAN25G2565 Fragaria x ananassa HOM05D004279 ORTHO05D004979 1.5e-58 229.9 143 80.4
CiPaw.12G122100 Carya illinoinensis HOM05D004279 ORTHO05D004979 2.0e-58 229.6 143 79.7
Rhsim04G0018800 Rhododendron simsii HOM05D004279 ORTHO05D004979 2.0e-58 229.6 143 78.3
Sed0021920 Sechium edule HOM05D004279 ORTHO05D004979 2.0e-58 229.6 143 78.3
Lsat_1_v5_gn_5_7280 Lactuca sativa HOM05D004279 ORTHO05D004979 2.6e-58 229.2 143 79.7
Aa31LG8G2770 Aethionema arabicum HOM05D004279 ORTHO05D004979 3.4e-58 228.8 143 79.0
BraA01t03905Z Brassica rapa HOM05D004279 ORTHO05D004979 4.5e-58 228.4 139 79.9
MD11G1239200 Malus domestica HOM05D004279 ORTHO05D004979 5.9e-58 228.0 144 79.2
CSS0001500 Camellia sinensis var. sinensis HOM05D004279 ORTHO05D004979 1.0e-57 227.3 136 81.6
HanXRQChr13g0386401 Helianthus annuus HOM05D004279 ORTHO05D004979 1.0e-57 227.3 143 79.7
A01p38550 Brassica napus HOM05D004279 ORTHO05D004979 1.3e-57 226.9 139 79.1
C01p48920 Brassica napus HOM05D004279 ORTHO05D004979 1.3e-57 226.9 139 79.1
DCAR_009977 Daucus carota HOM05D004279 ORTHO05D004979 1.7e-57 226.5 136 79.4
Aqoxy4G01310 Aquilegia oxysepala HOM05D004279 ORTHO05D004979 3.8e-57 225.3 138 79.0
ECA236G3281 Erigeron canadensis HOM05D004279 ORTHO05D004979 6.5e-57 224.6 143 77.6
Solyc07g063460.3 Solanum lycopersicum HOM05D004279 ORTHO05D004979 8.5e-57 224.2 143 75.5
Sopen07g031640 Solanum pennellii HOM05D004279 ORTHO05D004979 8.5e-57 224.2 143 75.5
TAR626G0357 Trochodendron aralioides HOM05D004279 ORTHO05D004979 8.5e-57 224.2 136 79.4
Hma1.2p1_1143F.1_g261130 Hydrangea macrophylla HOM05D004279 ORTHO05D004979 1.4e-56 223.4 143 75.5
Eucgr.F01088 Eucalyptus grandis HOM05D004279 ORTHO05D004979 1.9e-56 223.0 143 76.2
Cc05_g12550 Coffea canephora HOM05D004279 ORTHO05D004979 2.5e-56 222.6 149 73.2
Actinidia35269 Actinidia chinensis HOM05D004279 ORTHO05D004979 3.2e-56 222.2 134 79.1
PGSC0003DMG400019253 Solanum tuberosum HOM05D004279 ORTHO05D004979 3.2e-56 222.2 143 74.8
TAR624G0257 Trochodendron aralioides HOM05D004279 ORTHO05D004979 3.2e-56 222.2 136 78.7
Dinv08329 Davidia involucrata HOM05D004279 ORTHO05D004979 4.2e-56 221.9 127 85.8
Nn1g06689 Nelumbo nucifera HOM05D004279 ORTHO05D004979 7.2e-56 221.1 142 75.4
Nitab4.5_0000815g0050 Nicotiana tabacum HOM05D004279 ORTHO05D004979 1.6e-55 219.9 143 74.8
Peaxi162Scf01111g00012 Petunia axillaris HOM05D004279 ORTHO05D004979 2.1e-55 219.5 143 75.5
Nn1g03957 Nelumbo nucifera HOM05D004279 ORTHO05D004979 2.7e-55 219.2 139 77.0
MSTRG.14375 Avicennia marina HOM05D004279 ORTHO05D004979 1.4e-54 216.9 132 78.8
Migut.H01911 Erythranthe guttata HOM05D004279 ORTHO05D004979 2.3e-54 216.1 151 72.2
Nitab4.5_0009177g0010 Nicotiana tabacum HOM05D004279 ORTHO05D004979 2.3e-54 216.1 135 77.0
PSO210G3340 Papaver somniferum HOM05D004279 ORTHO05D004979 2.3e-54 216.1 138 76.8
MSTRG.12925 Avicennia marina HOM05D004279 ORTHO05D004979 3.9e-54 215.3 132 78.0
PSO832G3402 Papaver somniferum HOM05D004279 ORTHO05D004979 6.7e-54 214.5 138 76.1
CSS0025917 Camellia sinensis var. sinensis HOM05D004279 ORTHO05D004979 1.5e-53 213.4 137 76.6
DCAR_022481 Daucus carota HOM05D004279 ORTHO05D004979 4.4e-53 211.8 136 73.5
SGA_v2.0_scaffold9G04950 Striga asiatica HOM05D004279 ORTHO05D004979 9.7e-53 210.7 143 72.7
Actinidia18754 Actinidia chinensis HOM05D002936 ORTHO05D004979 1.7e-52 209.9 130 77.7
SHI28037 Sapria himalayana HOM05D004279 ORTHO05D004979 2.2e-52 209.5 143 71.3
Oeu055672.1 Olea europaea HOM05D004279 ORTHO05D004979 3.7e-52 208.8 139 74.1
SalBow7G1458 Salvia bowleyana HOM05D004279 ORTHO05D004979 6.3e-52 208.0 132 75.8
Oeu008023.1 Olea europaea HOM05D004279 ORTHO05D004979 8.2e-52 207.6 148 68.9
Lalb_Chr01g0016991 Lupinus albus HOM05D004279 ORTHO05D004979 1.4e-51 206.8 144 73.6
MBI02_g29384_MAGBIO Magnolia biondii HOM05D004279 ORTHO05D004979 1.5e-50 203.4 134 74.6
SGA_v2.0_scaffold73G24305 Striga asiatica HOM05D004279 ORTHO05D004979 2.0e-50 203.0 146 65.8
Sc16g0006820 Simmondsia chinensis HOM05D004279 ORTHO05D004979 2.6e-50 202.6 138 71.7
SHI18877 Sapria himalayana HOM05D004279 ORTHO05D004979 3.8e-49 198.7 140 68.6
HanXRQChr08g0235661 Helianthus annuus HOM05D004279 ORTHO05D004979 2.5e-48 196.1 126 73.8
Lalb_Chr25g0286631 Lupinus albus HOM05D004279 ORTHO05D004979 2.5e-48 196.1 145 71.7
SHI27891 Sapria himalayana HOM05D004279 ORTHO05D004979 2.7e-47 192.6 142 66.9
VMungo1127G1925 Vigna mungo HOM05D004279 ORTHO05D004979 2.7e-47 192.6 144 68.8
Phvul.011G148200 Phaseolus vulgaris HOM05D004279 ORTHO05D004979 3.6e-47 192.2 144 68.8
Glyma.06G249400 Glycine max HOM05D004279 ORTHO05D004979 6.1e-47 191.4 144 67.4
Glyma.12G148500 Glycine max HOM05D004279 ORTHO05D004979 1.8e-46 189.9 144 67.4
Ah.06g183670 Amaranthus hybridus HOM05D004279 ORTHO05D004979 3.3e-45 185.7 153 64.7
unitig_0.g2258 Utricularia gibba HOM05D004279 ORTHO05D004979 5.7e-45 184.9 136 64.7
CSS0045555 Camellia sinensis var. sinensis HOM05D004279 ORTHO05D004979 7.4e-45 184.5 137 70.1
AUR62029338 Chenopodium quinoa HOM05D004279 ORTHO05D004979 3.7e-44 182.2 152 64.5
AUR62015623 Chenopodium quinoa HOM05D004279 ORTHO05D004979 4.8e-44 181.8 152 64.5
Lsat_1_v5_gn_7_105700 Lactuca sativa HOM05D004279 ORTHO05D004979 6.3e-44 181.4 126 72.2
SHI28023 Sapria himalayana HOM05D004279 ORTHO05D004979 6.3e-44 181.4 142 64.1
EL10Ac4g08091 Beta vulgaris HOM05D004279 ORTHO05D004979 1.1e-43 180.6 156 62.2
CSS0022309 Camellia sinensis var. sinensis HOM05D004279 ORTHO05D004979 1.2e-39 167.2 124 68.5
HPP92_016704 Vanilla planifolia HOM05D004279 ORTHO05D004979 1.3e-36 157.1 130 62.3
Glyma.13G280900 Glycine max HOM05D004279 ORTHO05D004979 7.0e-35 151.4 143 58.0
ECA246G0789 Erigeron canadensis HOM05D004279 ORTHO05D004979 3.8e-33 145.6 93 73.1
Mapoly0019s0089 Marchantia polymorpha HOM05D004279 ORTHO05D004979 1.9e-32 143.3 120 55.0
SHI27902 Sapria himalayana HOM05D004279 ORTHO05D004979 4.2e-32 142.1 142 55.6
SHI27994 Sapria himalayana HOM05D004279 ORTHO05D004979 7.2e-32 141.4 142 52.8
ATR0693G409 Amborella trichopoda HOM05D004279 ORTHO05D004979 1.9e-24 116.7 132 51.5
Thhalv10014468m.g Eutrema salsugineum HOM05D004279 ORTHO05D004979 5.5e-24 115.2 69 81.2
VMungo1127G2040 Vigna mungo HOM05D004279 ORTHO05D004979 2.1e-23 113.2 88 63.6
CBR_g24389 Chara braunii HOM05D004279 ORTHO05D004979 1.2e-21 107.5 119 46.2
SHI28022 Sapria himalayana HOM05D004279 ORTHO05D004979 4.0e-14 82.4 68 58.8
GSVIVG01014410001 Vitis vinifera HOM05D004279 ORTHO05D004979 9.8e-13 77.8 43 83.7


User provided reference genes

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