Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr2.2805 Acer truncatum HOM05D000770 ORTHO05D000586 6.5e-54 213.8 105 100.0
Ca_01828_v3 Cicer arietinum L. HOM05D000770 ORTHO05D000586 4.7e-12 74.7 91 53.8
FAN16G1586 Fragaria x ananassa HOM05D000770 ORTHO05D000586 1.4e-11 73.2 42 81.0
Duzib268G1690 Durio zibethinus HOM05D000770 ORTHO05D000586 1.8e-11 72.8 42 81.0
Glyma.12G222400 Glycine max HOM05D000770 ORTHO05D000586 1.8e-11 72.8 42 81.0
Glyma.13G279200 Glycine max HOM05D000770 ORTHO05D000586 1.8e-11 72.8 42 81.0
Lalb_Chr25g0286551 Lupinus albus HOM05D000770 ORTHO05D000586 1.8e-11 72.8 42 81.0
Atru.chr2.2735 Acer truncatum HOM05D000770 ORTHO05D000586 3.0e-11 72.0 90 52.2
CANSAT56G1554 Cannabis sativa HOM05D000770 ORTHO05D000586 3.0e-11 72.0 90 52.2
Cpa.g.sc80.38 Carica papaya HOM05D000770 ORTHO05D000586 3.0e-11 72.0 42 78.6
FAN21G2007 Fragaria x ananassa HOM05D000770 ORTHO05D000586 3.0e-11 72.0 42 81.0
FAN25G2120 Fragaria x ananassa HOM05D000770 ORTHO05D000586 3.0e-11 72.0 42 81.0
VMungo1080G0090 Vigna mungo HOM05D000770 ORTHO05D000586 4.0e-11 71.6 42 78.6
COL.COLO4_09431 Corchorus olitorius HOM05D000770 ORTHO05D000586 5.2e-11 71.2 42 78.6
FvH4_3g20560 Fragaria vesca HOM05D000770 ORTHO05D000586 5.2e-11 71.2 42 81.0
FAN11G0564 Fragaria x ananassa HOM05D000770 ORTHO05D000586 5.2e-11 71.2 42 81.0
Lj3g0019739 Lotus japonicus HOM05D000770 ORTHO05D000586 5.2e-11 71.2 42 78.6
Dinv08314 Davidia involucrata HOM05D000770 ORTHO05D000586 8.8e-11 70.5 81 51.9
Duzib213G1072 Durio zibethinus HOM05D000770 ORTHO05D000586 8.8e-11 70.5 90 51.1
GSVIVG01014386001 Vitis vinifera HOM05D000770 ORTHO05D000586 8.8e-11 70.5 69 56.5
Sabra11G0108100 Salix brachista HOM05D000770 ORTHO05D000586 1.2e-10 70.1 42 73.8
MD11G1241900 Malus domestica HOM05D000770 ORTHO05D000586 2.0e-10 69.3 42 78.6
Sabra16G0264700 Salix brachista HOM05D000770 ORTHO05D000586 2.0e-10 69.3 42 76.2
Carub.0007s1340 Capsella rubella HOM05D000770 ORTHO05D000586 2.6e-10 68.9 90 50.0
AUR62029354 Chenopodium quinoa HOM05D000770 ORTHO05D000586 2.6e-10 68.9 90 46.7
Lalb_Chr20g0109741 Lupinus albus HOM05D000770 ORTHO05D000586 2.6e-10 68.9 90 50.0
Phvul.005G083400 Phaseolus vulgaris HOM05D000770 ORTHO05D000586 3.4e-10 68.6 90 47.8
Psat5g245320 Pisum sativum HOM05D000770 ORTHO05D000586 3.4e-10 68.6 90 51.1
Potri.001G403000 Populus trichocarpa HOM05D000770 ORTHO05D000586 3.4e-10 68.6 41 78.0
Gohir.A01G065500 Gossypium hirsutum HOM05D000770 ORTHO05D000586 4.4e-10 68.2 42 76.2
Gohir.D01G052900 Gossypium hirsutum HOM05D000770 ORTHO05D000586 4.4e-10 68.2 42 76.2
Gorai.002G072700 Gossypium raimondii HOM05D000770 ORTHO05D000586 4.4e-10 68.2 42 76.2
MD03G1224100 Malus domestica HOM05D000770 ORTHO05D000586 4.4e-10 68.2 42 78.6
Oeu008017.1 Olea europaea HOM05D000770 ORTHO05D000586 4.4e-10 68.2 90 51.1
MSTRG.6846 Avicennia marina HOM05D000770 ORTHO05D000586 5.7e-10 67.8 40 80.0
EL10Ac4g08120 Beta vulgaris HOM05D000770 ORTHO05D000586 5.7e-10 67.8 90 46.7
TWI39G0499 Tripterygium wilfordii HOM05D000770 ORTHO05D000586 5.7e-10 67.8 42 76.2
A08p20480 Brassica napus HOM05D000770 ORTHO05D000586 7.5e-10 67.4 52 65.4
BolC8t48705H Brassica oleracea HOM05D000770 ORTHO05D000586 7.5e-10 67.4 90 48.9
BraA08t34004Z Brassica rapa HOM05D000770 ORTHO05D000586 7.5e-10 67.4 52 65.4
Haze_09472 Corylus avellana HOM05D000770 ORTHO05D000586 7.5e-10 67.4 90 50.0
Haze_09476 Corylus avellana HOM05D000770 ORTHO05D000586 7.5e-10 67.4 90 50.0
Glyma.12G150500 Glycine max HOM05D000770 ORTHO05D000586 7.5e-10 67.4 69 53.6
Oeu030442.1 Olea europaea HOM05D000770 ORTHO05D000586 7.5e-10 67.4 90 50.0
CiPaw.11G173100 Carya illinoinensis HOM05D000770 ORTHO05D000586 9.8e-10 67.0 42 76.2
Migut.M00856 Erythranthe guttata HOM05D000770 ORTHO05D000586 9.8e-10 67.0 52 61.5
Potri.011G122100 Populus trichocarpa HOM05D000770 ORTHO05D000586 9.8e-10 67.0 98 44.9
Prupe.4G185400 Prunus persica HOM05D000770 ORTHO05D000586 9.8e-10 67.0 42 76.2
Sp7g25400 Schrenkiella parvula HOM05D000770 ORTHO05D000586 9.8e-10 67.0 90 48.9
BcaC07g38281 Brassica carinata HOM05D000770 ORTHO05D000586 1.3e-09 66.6 90 48.9
C08p10270 Brassica napus HOM05D000770 ORTHO05D000586 1.3e-09 66.6 90 48.9
Nn1g04022 Nelumbo nucifera HOM05D000770 ORTHO05D000586 1.3e-09 66.6 42 73.8
PGR083G2267 Punica granatum HOM05D000770 ORTHO05D000586 1.3e-09 66.6 42 69.0
AUR62034235 Chenopodium quinoa HOM05D000770 ORTHO05D000586 1.7e-09 66.2 68 51.5
Ciclev10009261m.g Citrus clementina HOM05D000770 ORTHO05D000586 1.7e-09 66.2 68 55.9
Manes.15G085500 Manihot esculenta HOM05D000770 ORTHO05D000586 1.7e-09 66.2 42 73.8
SGA_v2.0_scaffold73G24294 Striga asiatica HOM05D000770 ORTHO05D000586 1.7e-09 66.2 52 65.4
AL7G25320 Arabidopsis lyrata HOM05D000770 ORTHO05D000586 2.2e-09 65.9 90 48.9
AT4G27450 Arabidopsis thaliana HOM05D000770 ORTHO05D000586 2.2e-09 65.9 90 48.9
CiPaw.12G120700 Carya illinoinensis HOM05D000770 ORTHO05D000586 2.2e-09 65.9 90 47.8
QL08p019765 Quercus lobata HOM05D000770 ORTHO05D000586 2.2e-09 65.9 42 71.4
RcHm_v2.0_Chr5g0034571 Rosa chinensis HOM05D000770 ORTHO05D000586 2.2e-09 65.9 42 76.2
Cfa020549 Carpinus fangiana HOM05D000770 ORTHO05D000586 2.8e-09 65.5 90 50.0
Thecc.07G077300 Theobroma cacao HOM05D000770 ORTHO05D000586 2.8e-09 65.5 42 76.2
arahy.Tifrunner.gnm1.ann1.438HD4 Arachis hypogaea HOM05D000770 ORTHO05D000586 3.7e-09 65.1 42 71.4
arahy.Tifrunner.gnm1.ann1.7X1NZD Arachis hypogaea HOM05D000770 ORTHO05D000586 3.7e-09 65.1 68 54.4
arahy.Tifrunner.gnm1.ann1.AUV3TU Arachis hypogaea HOM05D000770 ORTHO05D000586 3.7e-09 65.1 68 54.4
Lj1A848T58 Lonicera japonica HOM05D000770 ORTHO05D000586 3.7e-09 65.1 64 54.7
arahy.Tifrunner.gnm1.ann1.D3G28H Arachis hypogaea HOM05D000770 ORTHO05D000586 4.9e-09 64.7 42 71.4
BcaNung03025 Brassica carinata HOM05D000770 ORTHO05D000586 4.9e-09 64.7 90 48.9
C01p23640 Brassica napus HOM05D000770 ORTHO05D000586 4.9e-09 64.7 90 48.9
BolC1t02307H Brassica oleracea HOM05D000770 ORTHO05D000586 4.9e-09 64.7 90 48.9
CARHR235130 Cardamine hirsuta HOM05D000770 ORTHO05D000586 4.9e-09 64.7 52 59.6
Hma1.2p1_0540F.1_g174660 Hydrangea macrophylla HOM05D000770 ORTHO05D000586 4.9e-09 64.7 81 49.4
Ah.06g183880 Amaranthus hybridus HOM05D000770 ORTHO05D000586 6.3e-09 64.3 90 43.3
TAR627G0956 Trochodendron aralioides HOM05D000770 ORTHO05D000586 6.3e-09 64.3 42 71.4
A01p18620 Brassica napus HOM05D000770 ORTHO05D000586 8.3e-09 63.9 90 48.9
BraA01t01812Z Brassica rapa HOM05D000770 ORTHO05D000586 8.3e-09 63.9 90 48.9
Thhalv10026074m.g Eutrema salsugineum HOM05D000770 ORTHO05D000586 1.1e-08 63.5 90 47.8
AT3G15450 Arabidopsis thaliana HOM05D000770 ORTHO05D000586 1.4e-08 63.2 43 72.1
Cc05_g12340 Coffea canephora HOM05D000770 ORTHO05D000586 1.4e-08 63.2 40 72.5
Carub.0003s1517 Capsella rubella HOM05D000770 ORTHO05D000586 1.8e-08 62.8 43 72.1
Lsat_1_v5_gn_5_8421 Lactuca sativa HOM05D000770 ORTHO05D000586 1.8e-08 62.8 90 45.6
Dinv04322 Davidia involucrata HOM05D000770 ORTHO05D000586 3.1e-08 62.0 42 76.2
Carub.0001s4210 Capsella rubella HOM05D000770 ORTHO05D000586 4.1e-08 61.6 42 69.0
DCAR_020983 Daucus carota HOM05D000770 ORTHO05D000586 4.1e-08 61.6 42 76.2
Aa31LG5G10070 Aethionema arabicum HOM05D000770 ORTHO05D000586 5.4e-08 61.2 90 45.6
CARHR043160 Cardamine hirsuta HOM05D000770 ORTHO05D000586 5.4e-08 61.2 42 71.4
Medtr2g079670 Medicago truncatula HOM05D000770 ORTHO05D000586 5.4e-08 61.2 42 69.0
THA.LOC104811858 Tarenaya hassleriana HOM05D000770 ORTHO05D000586 5.4e-08 61.2 42 69.0
Thhalv10011733m.g Eutrema salsugineum HOM05D000770 ORTHO05D000586 7.0e-08 60.8 42 71.4
DCAR_019544 Daucus carota HOM05D000770 ORTHO05D000586 9.2e-08 60.5 91 50.5
CARHR090500 Cardamine hirsuta HOM05D000770 ORTHO05D000586 1.2e-07 60.1 43 69.8
ClCG11G018200 Citrullus lanatus HOM05D000770 ORTHO05D000586 1.2e-07 60.1 90 46.7
Lj3g0026612 Lotus japonicus HOM05D000770 ORTHO05D000586 2.0e-07 59.3 91 47.3
Sp3g13700 Schrenkiella parvula HOM05D000770 ORTHO05D000586 2.0e-07 59.3 43 69.8
A05p33970 Brassica napus HOM05D000770 ORTHO05D000586 2.7e-07 58.9 43 67.4
BraA05t22219Z Brassica rapa HOM05D000770 ORTHO05D000586 2.7e-07 58.9 43 67.4
Nn1g06607 Nelumbo nucifera HOM05D000770 ORTHO05D000586 2.7e-07 58.9 42 66.7
Sp1g39510 Schrenkiella parvula HOM05D000770 ORTHO05D000586 3.5e-07 58.5 42 69.0
Hund22950 Selenicereus undatus HOM05D000770 ORTHO05D000586 3.5e-07 58.5 42 73.8
BcaB06g29575 Brassica carinata HOM05D000770 ORTHO05D000586 4.5e-07 58.2 43 67.4
BcaC05g29010 Brassica carinata HOM05D000770 ORTHO05D000586 4.5e-07 58.2 43 67.4
C05p51720 Brassica napus HOM05D000770 ORTHO05D000586 4.5e-07 58.2 43 67.4
CsaV3_4G033850 Cucumis sativus L. HOM05D000770 ORTHO05D000586 4.5e-07 58.2 42 64.3
Thhalv10021397m.g Eutrema salsugineum HOM05D000770 ORTHO05D000586 4.5e-07 58.2 42 69.0
AL3G28000 Arabidopsis lyrata HOM05D000770 ORTHO05D000586 7.7e-07 57.4 43 65.1
BcaB04g20925 Brassica carinata HOM05D000770 ORTHO05D000586 7.7e-07 57.4 43 67.4
BcaC08g43479 Brassica carinata HOM05D000770 ORTHO05D000586 7.7e-07 57.4 42 66.7
A01p38750 Brassica napus HOM05D000770 ORTHO05D000586 7.7e-07 57.4 43 67.4
A06p01400 Brassica napus HOM05D000770 ORTHO05D000586 7.7e-07 57.4 42 66.7
C06p08660 Brassica napus HOM05D000770 ORTHO05D000586 7.7e-07 57.4 42 66.7
BraA01t03910Z Brassica rapa HOM05D000770 ORTHO05D000586 7.7e-07 57.4 43 67.4
BraA06t23361Z Brassica rapa HOM05D000770 ORTHO05D000586 7.7e-07 57.4 42 66.7
Sed0021321 Sechium edule HOM05D000770 ORTHO05D000586 7.7e-07 57.4 42 64.3
BcaB07g33372 Brassica carinata HOM05D000770 ORTHO05D000586 1.0e-06 57.0 42 66.7
Aa31LG8G2680 Aethionema arabicum HOM05D000770 ORTHO05D000586 1.3e-06 56.6 42 69.0
AL1G61280 Arabidopsis lyrata HOM05D000770 ORTHO05D000586 1.3e-06 56.6 42 64.3
CSS0017813 Camellia sinensis var. sinensis HOM05D000770 ORTHO05D000586 1.3e-06 56.6 52 57.7
HanXRQChr08g0234341 Helianthus annuus HOM05D000770 ORTHO05D000586 1.7e-06 56.2 42 69.0
Peaxi162Scf00000g43013 Petunia axillaris HOM05D000770 ORTHO05D000586 1.7e-06 56.2 97 44.3
Rhsim02G0127500 Rhododendron simsii HOM05D000770 ORTHO05D000586 1.7e-06 56.2 81 45.7
BolC1t04865H Brassica oleracea HOM05D000770 ORTHO05D000586 2.3e-06 55.8 43 65.1
BolC5t33858H Brassica oleracea HOM05D000770 ORTHO05D000586 2.3e-06 55.8 43 65.1
Rhsim06G0196500 Rhododendron simsii HOM05D000770 ORTHO05D000586 2.3e-06 55.8 75 49.3
Aqoxy4G01050 Aquilegia oxysepala HOM05D000770 ORTHO05D000586 2.9e-06 55.5 90 45.6
THA.LOC104818061 Tarenaya hassleriana HOM05D000770 ORTHO05D000586 2.9e-06 55.5 42 66.7
BolC6t35942H Brassica oleracea HOM05D000770 ORTHO05D000586 3.8e-06 55.1 42 64.3
Aa31LG10G2150 Aethionema arabicum HOM05D000770 ORTHO05D000586 6.6e-06 54.3 42 66.7
ECA246G0939 Erigeron canadensis HOM05D000770 ORTHO05D000586 8.6e-06 53.9 42 64.3
Hma1.2p1_0126F.1_g059230 Hydrangea macrophylla HOM05D000770 ORTHO05D000586 8.6e-06 53.9 42 64.3


User provided reference genes

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