Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr2.2794 Acer truncatum HOM05D006800 ORTHO05D008478 2.8e-55 218.4 112 100.0
Atru.chr2.2809 Acer truncatum HOM05D006800 ORTHO05D008478 5.3e-46 187.6 103 93.2
Ciclev10008220m.g Citrus clementina HOM05D006800 ORTHO05D008478 1.0e-41 173.3 103 87.4
Cfa020530 Carpinus fangiana HOM05D006800 ORTHO05D008478 1.8e-41 172.6 100 88.0
CANSAT11G1341 Cannabis sativa HOM05D006800 ORTHO05D008478 3.9e-41 171.4 104 85.6
CiPaw.12G122000 Carya illinoinensis HOM05D006800 ORTHO05D008478 8.7e-41 170.2 100 88.0
Potri.001G404700 Populus trichocarpa HOM05D006800 ORTHO05D008478 3.3e-40 168.3 103 84.5
Atru.chr2.2798 Acer truncatum HOM05D006800 ORTHO05D008478 4.3e-40 167.9 103 85.4
Sabra16G0266000 Salix brachista HOM05D006800 ORTHO05D008478 5.7e-40 167.5 103 84.5
Thecc.07G074700 Theobroma cacao HOM05D006800 ORTHO05D008478 9.7e-40 166.8 103 82.5
TWI39G0599 Tripterygium wilfordii HOM05D006800 ORTHO05D008478 1.3e-39 166.4 97 87.6
GSVIVG01014408001 Vitis vinifera HOM05D006800 ORTHO05D008478 1.3e-39 166.4 100 85.0
Gohir.A11G282747 Gossypium hirsutum HOM05D006800 ORTHO05D008478 1.7e-39 166.0 103 81.6
Gohir.D11G296300 Gossypium hirsutum HOM05D006800 ORTHO05D008478 1.7e-39 166.0 103 81.6
Gorai.007G319400 Gossypium raimondii HOM05D006800 ORTHO05D008478 1.7e-39 166.0 103 81.6
AUR62015625 Chenopodium quinoa HOM05D006800 ORTHO05D008478 2.2e-39 165.6 105 80.0
Duzib268G1025 Durio zibethinus HOM05D006800 ORTHO05D008478 3.7e-39 164.9 103 81.6
QL08p019137 Quercus lobata HOM05D006800 ORTHO05D008478 3.7e-39 164.9 100 85.0
THA.LOC104818055 Tarenaya hassleriana HOM05D006800 ORTHO05D008478 4.8e-39 164.5 104 80.8
PGR083G0724 Punica granatum HOM05D006800 ORTHO05D008478 6.3e-39 164.1 100 82.0
TAR674G0003 Trochodendron aralioides HOM05D006800 ORTHO05D008478 6.3e-39 164.1 105 81.9
AUR62029335 Chenopodium quinoa HOM05D006800 ORTHO05D008478 8.2e-39 163.7 100 82.0
Ciclev10008058m.g Citrus clementina HOM05D006800 ORTHO05D008478 8.2e-39 163.7 109 78.0
Manes.03G114600 Manihot esculenta HOM05D006800 ORTHO05D008478 1.4e-38 162.9 103 81.6
CSS0014964 Camellia sinensis var. sinensis HOM05D006800 ORTHO05D008478 2.4e-38 162.2 100 83.0
Eucgr.F01089 Eucalyptus grandis HOM05D006800 ORTHO05D008478 2.4e-38 162.2 100 83.0
Lalb_Chr19g0134361 Lupinus albus HOM05D006800 ORTHO05D008478 2.4e-38 162.2 99 81.8
vmacro11823 Vaccinium macrocarpon HOM05D006800 ORTHO05D008478 2.4e-38 162.2 97 85.6
Cpa.g.sc80.97 Carica papaya HOM05D006800 ORTHO05D008478 3.1e-38 161.8 97 84.5
Prupe.4G187400 Prunus persica HOM05D006800 ORTHO05D008478 3.1e-38 161.8 97 84.5
Hund15928 Selenicereus undatus HOM05D006800 ORTHO05D008478 4.1e-38 161.4 100 82.0
RcHm_v2.0_Chr5g0034961 Rosa chinensis HOM05D006800 ORTHO05D008478 5.3e-38 161.0 103 79.6
Sed0026398 Sechium edule HOM05D006800 ORTHO05D008478 5.3e-38 161.0 103 78.6
Sp3g13780 Schrenkiella parvula HOM05D006800 ORTHO05D008478 6.9e-38 160.6 97 81.4
Ah.06g183750 Amaranthus hybridus HOM05D006800 ORTHO05D008478 9.1e-38 160.2 100 79.0
EL10Ac4g08093 Beta vulgaris HOM05D006800 ORTHO05D008478 9.1e-38 160.2 100 82.0
Aa31LG8G2760 Aethionema arabicum HOM05D006800 ORTHO05D008478 1.2e-37 159.8 97 83.5
Dinv22373 Davidia involucrata HOM05D006800 ORTHO05D008478 1.2e-37 159.8 100 83.0
MD03G1222300 Malus domestica HOM05D006800 ORTHO05D008478 1.2e-37 159.8 99 81.8
BcaC05g28965 Brassica carinata HOM05D006800 ORTHO05D008478 1.5e-37 159.5 97 80.4
Hma1.2p1_1274F.1_g271940 Hydrangea macrophylla HOM05D006800 ORTHO05D008478 1.5e-37 159.5 100 81.0
Hma1.2p1_2417F.1_g321750 Hydrangea macrophylla HOM05D006800 ORTHO05D008478 1.5e-37 159.5 100 81.0
Rhsim06G0194400 Rhododendron simsii HOM05D006800 ORTHO05D008478 1.5e-37 159.5 96 84.4
AL3G28100 Arabidopsis lyrata HOM05D006800 ORTHO05D008478 2.0e-37 159.1 97 81.4
AT3G15520 Arabidopsis thaliana HOM05D006800 ORTHO05D008478 2.0e-37 159.1 97 81.4
FvH4_3g20740 Fragaria vesca HOM05D006800 ORTHO05D008478 2.0e-37 159.1 103 78.6
Psat7g032000 Pisum sativum HOM05D006800 ORTHO05D008478 2.6e-37 158.7 100 79.0
Carub.0003s1525 Capsella rubella HOM05D006800 ORTHO05D008478 3.4e-37 158.3 97 80.4
MELO3C016542.2 Cucumis melo HOM05D006800 ORTHO05D008478 3.4e-37 158.3 103 77.7
Lsat_1_v5_gn_9_95880 Lactuca sativa HOM05D006800 ORTHO05D008478 3.4e-37 158.3 98 81.6
Rhsim06G0193900 Rhododendron simsii HOM05D006800 ORTHO05D008478 3.4e-37 158.3 96 84.4
CsaV3_3G006070 Cucumis sativus L. HOM05D006800 ORTHO05D008478 4.5e-37 157.9 103 77.7
arahy.Tifrunner.gnm1.ann1.F90IWS Arachis hypogaea HOM05D006800 ORTHO05D008478 5.9e-37 157.5 99 79.8
Ca_23043_v3 Cicer arietinum L. HOM05D006800 ORTHO05D008478 5.9e-37 157.5 100 80.0
HanXRQChr10g0289501 Helianthus annuus HOM05D006800 ORTHO05D008478 5.9e-37 157.5 98 81.6
BcaB06g29587 Brassica carinata HOM05D006800 ORTHO05D008478 7.7e-37 157.1 97 79.4
FAN11G0427 Fragaria x ananassa HOM05D006800 ORTHO05D008478 7.7e-37 157.1 103 77.7
FAN25G0840 Fragaria x ananassa HOM05D006800 ORTHO05D008478 7.7e-37 157.1 103 77.7
Lj3g0016801 Lotus japonicus HOM05D006800 ORTHO05D008478 7.7e-37 157.1 101 82.2
Sc16g0006830 Simmondsia chinensis HOM05D006800 ORTHO05D008478 7.7e-37 157.1 100 79.0
TPR.G29364 Trifolium pratense HOM05D006800 ORTHO05D008478 7.7e-37 157.1 100 79.0
CARHR090580 Cardamine hirsuta HOM05D006800 ORTHO05D008478 1.3e-36 156.4 97 80.4
Thhalv10020685m.g Eutrema salsugineum HOM05D006800 ORTHO05D008478 1.3e-36 156.4 96 80.2
MSTRG.14374 Avicennia marina HOM05D006800 ORTHO05D008478 1.7e-36 156.0 105 77.1
Migut.H01913 Erythranthe guttata HOM05D006800 ORTHO05D008478 1.7e-36 156.0 98 79.6
arahy.Tifrunner.gnm1.ann1.6T6X8W Arachis hypogaea HOM05D006800 ORTHO05D008478 2.2e-36 155.6 99 78.8
ClCG10G006680 Citrullus lanatus HOM05D006800 ORTHO05D008478 2.2e-36 155.6 103 76.7
PSO541G1958 Papaver somniferum HOM05D006800 ORTHO05D008478 2.2e-36 155.6 97 80.4
Glyma.12G148600 Glycine max HOM05D006800 ORTHO05D008478 5.0e-36 154.5 105 76.2
Phvul.011G148100 Phaseolus vulgaris HOM05D006800 ORTHO05D008478 5.0e-36 154.5 105 75.2
Cc05_g12540 Coffea canephora HOM05D006800 ORTHO05D008478 6.5e-36 154.1 100 77.0
ECA240G3736 Erigeron canadensis HOM05D006800 ORTHO05D008478 6.5e-36 154.1 98 78.6
Medtr8g059435 Medicago truncatula HOM05D006800 ORTHO05D008478 6.5e-36 154.1 100 77.0
Peaxi162Scf00000g00497 Petunia axillaris HOM05D006800 ORTHO05D008478 6.5e-36 154.1 97 79.4
PSO675G5315 Papaver somniferum HOM05D006800 ORTHO05D008478 8.5e-36 153.7 97 79.4
Glyma.06G249300 Glycine max HOM05D006800 ORTHO05D008478 1.4e-35 152.9 105 75.2
BolC5t33848H Brassica oleracea HOM05D006800 ORTHO05D008478 2.5e-35 152.1 105 74.3
BraA05t22211Z Brassica rapa HOM05D006800 ORTHO05D008478 2.5e-35 152.1 105 74.3
ATR0693G395 Amborella trichopoda HOM05D006800 ORTHO05D008478 3.2e-35 151.8 97 79.4
Nitab4.5_0000662g0050 Nicotiana tabacum HOM05D006800 ORTHO05D008478 3.2e-35 151.8 97 78.4
VMungo1127G1600 Vigna mungo HOM05D006800 ORTHO05D008478 3.2e-35 151.8 96 79.2
FAN16G0832 Fragaria x ananassa HOM05D006800 ORTHO05D008478 4.2e-35 151.4 103 75.7
SalBow7G3299 Salvia bowleyana HOM05D006800 ORTHO05D008478 5.5e-35 151.0 98 76.5
DCAR_013080 Daucus carota HOM05D006800 ORTHO05D008478 9.4e-35 150.2 100 75.0
Solyc12g013580.3 Solanum lycopersicum HOM05D006800 ORTHO05D008478 1.2e-34 149.8 101 77.2
Sopen12g006940 Solanum pennellii HOM05D006800 ORTHO05D008478 1.2e-34 149.8 101 77.2
PGSC0003DMG400008569 Solanum tuberosum HOM05D006800 ORTHO05D008478 1.2e-34 149.8 101 77.2
CAN.G433.18 Capsicum annuum HOM05D006800 ORTHO05D008478 1.6e-34 149.4 105 73.3
Nitab4.5_0001610g0020 Nicotiana tabacum HOM05D006800 ORTHO05D008478 2.1e-34 149.1 97 76.3
Os07g0565600 Oryza sativa ssp. japonica HOM05D006800 ORTHO05D008478 2.7e-34 148.7 99 75.8
HPP92_001820 Vanilla planifolia HOM05D006800 ORTHO05D008478 4.7e-34 147.9 96 78.1
SGA_v2.0_scaffold9G04949 Striga asiatica HOM05D006800 ORTHO05D008478 7.9e-34 147.1 98 74.5
A05p33890 Brassica napus HOM05D006800 ORTHO05D008478 2.3e-33 145.6 97 76.3
C05p51600 Brassica napus HOM05D006800 ORTHO05D008478 2.3e-33 145.6 97 76.3
unitig_899.g15558 Utricularia gibba HOM05D006800 ORTHO05D008478 3.9e-33 144.8 102 69.6
CDE02G3099 Ceratophyllum demersum HOM05D006800 ORTHO05D008478 1.1e-32 143.3 96 76.0
Zm00001eb107080 Zea mays HOM05D006800 ORTHO05D008478 2.0e-32 142.5 99 72.7
COL.COLO4_03558 Corchorus olitorius HOM05D006800 ORTHO05D008478 2.6e-32 142.1 97 77.3
SEGI_03689 Sequoiadendron giganteum HOM05D006800 ORTHO05D008478 3.1e-30 135.2 97 70.1
AagrBONN_evm.TU.Sc2ySwM_117.2587 Anthoceros agrestis HOM05D006800 ORTHO05D008478 2.9e-28 128.6 99 68.7
Pp3c13_22210 Physcomitrium patens HOM05D006800 ORTHO05D008478 2.9e-28 128.6 104 65.4
Pp3c3_20400 Physcomitrium patens HOM05D006800 ORTHO05D008478 3.2e-27 125.2 98 64.3
Mapoly0082s0064 Marchantia polymorpha HOM05D006800 ORTHO05D008478 8.0e-26 120.6 98 60.2
Nn1g03972 Nelumbo nucifera HOM05D006800 ORTHO05D008478 2.3e-25 119.0 98 67.3
SMO367G0771 Selaginella moellendorffii HOM05D006800 ORTHO05D008478 2.6e-24 115.5 99 60.6
Atru.chr2.2807 Acer truncatum HOM05D006800 ORTHO05D008478 4.5e-21 104.8 105 58.1
Atru.chr2.2775 Acer truncatum HOM05D006800 ORTHO05D008478 1.0e-20 103.6 69 79.7
CBR_g19822 Chara braunii HOM05D006800 ORTHO05D008478 1.7e-20 102.8 96 53.1
Haze_09503 Corylus avellana HOM05D006800 ORTHO05D008478 8.5e-20 100.5 130 50.0
Oeu055670.1 Olea europaea HOM05D006800 ORTHO05D008478 8.8e-17 90.5 93 55.9
MCO05G047 Micromonas commoda HOM05D006800 ORTHO05D008478 2.5e-11 72.4 89 43.8
Hma1.2p1_2417F.1_g321760 Hydrangea macrophylla HOM05D006800 ORTHO05D008478 3.0e-09 65.5 42 73.8
Cre06.g303300 Chlamydomonas reinhardtii HOM05D006800 ORTHO05D008478 4.0e-09 65.1 77 44.2


User provided reference genes

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