Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr2.2769 Acer truncatum HOM05D007708 ORTHO05D009506 3.7e-61 238.0 121 100.0
Manes.03G114400 Manihot esculenta HOM05D007708 ORTHO05D009506 1.3e-21 106.7 100 60.0
Ciclev10009880m.g Citrus clementina HOM05D007708 ORTHO05D009506 1.4e-20 103.2 105 57.1
Gohir.A01G066900 Gossypium hirsutum HOM05D007708 ORTHO05D009506 2.7e-19 99.0 67 70.1
Gohir.A04G028100 Gossypium hirsutum HOM05D007708 ORTHO05D009506 2.7e-19 99.0 92 58.7
Thecc.07G075600 Theobroma cacao HOM05D007708 ORTHO05D009506 2.7e-19 99.0 64 71.9
Gohir.D05G360000 Gossypium hirsutum HOM05D007708 ORTHO05D009506 6.0e-19 97.8 100 53.0
Gorai.009G432700 Gossypium raimondii HOM05D007708 ORTHO05D009506 6.0e-19 97.8 100 53.0
Gorai.002G073900 Gossypium raimondii HOM05D007708 ORTHO05D009506 1.0e-18 97.1 103 53.4
Gohir.D01G054100 Gossypium hirsutum HOM05D007708 ORTHO05D009506 1.3e-18 96.7 103 54.4
Duzib268G1443 Durio zibethinus HOM05D007708 ORTHO05D009506 3.9e-18 95.1 85 58.8
Potri.001G404500 Populus trichocarpa HOM05D007708 ORTHO05D009506 5.0e-18 94.7 100 53.0
Potri.011G123600 Populus trichocarpa HOM05D007708 ORTHO05D009506 9.5e-17 90.5 101 52.5
THA.LOC104818058 Tarenaya hassleriana HOM05D007708 ORTHO05D009506 1.6e-16 89.7 75 58.7
TWI38G1724 Tripterygium wilfordii HOM05D007708 ORTHO05D009506 4.7e-16 88.2 113 49.6
CiPaw.11G174300 Carya illinoinensis HOM05D007708 ORTHO05D009506 6.2e-16 87.8 126 46.8
Psat5g246000 Pisum sativum HOM05D007708 ORTHO05D009506 8.1e-16 87.4 65 63.1
Medtr2g080030 Medicago truncatula HOM05D007708 ORTHO05D009506 1.1e-15 87.0 65 63.1
Ca_01817_v3 Cicer arietinum L. HOM05D007708 ORTHO05D009506 1.4e-15 86.7 65 63.1
QL08p019254 Quercus lobata HOM05D007708 ORTHO05D009506 1.4e-15 86.7 119 46.2
THA.LOC104810490 Tarenaya hassleriana HOM05D007708 ORTHO05D009506 1.8e-15 86.3 76 52.6
Eucgr.F03340 Eucalyptus grandis HOM05D007708 ORTHO05D009506 3.1e-15 85.5 67 61.2
Lj3g0000986 Lotus japonicus HOM05D007708 ORTHO05D009506 3.1e-15 85.5 75 57.3
Glyma.12G221200 Glycine max HOM05D007708 ORTHO05D009506 5.2e-15 84.7 71 62.0
Aa31LG8G2750 Aethionema arabicum HOM05D007708 ORTHO05D009506 6.8e-15 84.3 74 56.8
Sp1g39450 Schrenkiella parvula HOM05D000067 ORTHO05D000097 8.9e-15 84.0 112 42.9
Aa31LG10G2210 Aethionema arabicum HOM05D007708 ORTHO05D009506 1.2e-14 83.6 104 46.2
BcaB07g33383 Brassica carinata HOM05D007708 ORTHO05D009506 3.4e-14 82.0 120 44.2
Thhalv10012270m.g Eutrema salsugineum HOM05D007708 ORTHO05D009506 4.4e-14 81.6 107 45.8
Phvul.005G084800 Phaseolus vulgaris HOM05D007708 ORTHO05D009506 7.5e-14 80.9 71 62.0
Prupe.4G187200 Prunus persica HOM05D007708 ORTHO05D009506 9.8e-14 80.5 68 60.3
TPR.G38977 Trifolium pratense HOM05D007708 ORTHO05D009506 9.8e-14 80.5 66 62.1
Carub.0003s1524 Capsella rubella HOM05D007708 ORTHO05D009506 1.3e-13 80.1 100 46.0
AL3G28090 Arabidopsis lyrata HOM05D007708 ORTHO05D009506 1.7e-13 79.7 99 46.5
BcaC08g43472 Brassica carinata HOM05D007708 ORTHO05D009506 1.7e-13 79.7 80 53.8
C06p08550 Brassica napus HOM05D007708 ORTHO05D009506 1.7e-13 79.7 80 53.8
BolC6t35934H Brassica oleracea HOM05D007708 ORTHO05D009506 1.7e-13 79.7 80 53.8
MD11G1239800 Malus domestica HOM05D007708 ORTHO05D009506 1.7e-13 79.7 87 56.3
Glyma.13G280400 Glycine max HOM05D007708 ORTHO05D009506 2.2e-13 79.3 71 59.2
AT3G15518 Arabidopsis thaliana HOM05D007708 ORTHO05D009506 2.9e-13 79.0 99 46.5
A05p33900 Brassica napus HOM05D007708 ORTHO05D009506 2.9e-13 79.0 99 48.5
BraA05t22212Z Brassica rapa HOM05D007708 ORTHO05D009506 2.9e-13 79.0 99 48.5
Lalb_Chr07g0181711 Lupinus albus HOM05D007708 ORTHO05D009506 2.9e-13 79.0 73 58.9
BcaC05g28966 Brassica carinata HOM05D007708 ORTHO05D009506 3.7e-13 78.6 99 47.5
C05p51610 Brassica napus HOM05D007708 ORTHO05D009506 3.7e-13 78.6 99 47.5
BolC5t33849H Brassica oleracea HOM05D007708 ORTHO05D009506 3.7e-13 78.6 99 47.5
VMungo1080G0096 Vigna mungo HOM05D007708 ORTHO05D009506 3.7e-13 78.6 101 50.5
A06p01470 Brassica napus HOM05D007708 ORTHO05D009506 4.9e-13 78.2 80 52.5
BraA06t23368Z Brassica rapa HOM05D007708 ORTHO05D009506 4.9e-13 78.2 80 52.5
FAN16G0929 Fragaria x ananassa HOM05D007708 ORTHO05D009506 8.3e-13 77.4 72 55.6
CARHR090570 Cardamine hirsuta HOM05D007708 ORTHO05D009506 1.1e-12 77.0 103 45.6
Haze_09495 Corylus avellana HOM05D007708 ORTHO05D009506 1.1e-12 77.0 103 45.6
MD03G1222500 Malus domestica HOM05D007708 ORTHO05D009506 1.4e-12 76.6 99 51.5
FvH4_3g20710 Fragaria vesca HOM05D007708 ORTHO05D009506 1.9e-12 76.3 104 45.2
FAN11G2360 Fragaria x ananassa HOM05D007708 ORTHO05D009506 1.9e-12 76.3 104 45.2
FAN25G1391 Fragaria x ananassa HOM05D007708 ORTHO05D009506 1.9e-12 76.3 104 45.2
BolC1t04856H Brassica oleracea HOM05D007708 ORTHO05D009506 2.4e-12 75.9 91 47.3
Thhalv10021811m.g Eutrema salsugineum HOM05D007708 ORTHO05D009506 2.4e-12 75.9 103 43.7
FAN21G3926 Fragaria x ananassa HOM05D007708 ORTHO05D009506 4.1e-12 75.1 104 44.2
BcaB06g29586 Brassica carinata HOM05D007708 ORTHO05D009506 5.4e-12 74.7 100 46.0
RcHm_v2.0_Chr5g0034861 Rosa chinensis HOM05D007708 ORTHO05D009506 5.4e-12 74.7 104 45.2
Sp3g13770 Schrenkiella parvula HOM05D007708 ORTHO05D009506 5.4e-12 74.7 103 45.6
BcaB04g20921 Brassica carinata HOM05D007708 ORTHO05D009506 7.1e-12 74.3 103 46.6
BcaC09g48516 Brassica carinata HOM05D007708 ORTHO05D009506 7.1e-12 74.3 100 44.0
BcaC09g48517 Brassica carinata HOM05D007708 ORTHO05D009506 7.1e-12 74.3 100 44.0
Cfa020536 Carpinus fangiana HOM05D007708 ORTHO05D009506 6.0e-11 71.2 123 41.5
COL.COLO4_09450 Corchorus olitorius HOM05D007708 ORTHO05D009506 1.0e-10 70.5 48 72.9
MBI02_g19253_MAGBIO Magnolia biondii HOM05D007708 ORTHO05D009506 3.6e-08 62.0 75 49.3
Glyma.06G249202 Glycine max HOM05D007708 ORTHO05D009506 2.3e-07 59.3 84 47.6
BcaC09g48515 Brassica carinata HOM05D007708 ORTHO05D009506 5.2e-07 58.2 100 39.0
ClCG11G018300 Citrullus lanatus HOM05D007708 ORTHO05D009506 6.8e-07 57.8 47 59.6
CsaV3_3G044520 Cucumis sativus L. HOM05D007708 ORTHO05D009506 6.8e-07 57.8 47 57.4
Lsat_1_v5_gn_5_7381 Lactuca sativa HOM05D007708 ORTHO05D009506 8.9e-07 57.4 36 75.0
MELO3C018234.2 Cucumis melo HOM05D007708 ORTHO05D009506 1.5e-06 56.6 47 55.3
Sed0014711 Sechium edule HOM05D007708 ORTHO05D009506 3.4e-06 55.5 72 45.8
Nn1g06676 Nelumbo nucifera HOM05D007708 ORTHO05D009506 9.9e-06 53.9 76 46.1
TAR626G1828 Trochodendron aralioides HOM05D007708 ORTHO05D009506 9.9e-06 53.9 90 40.0


User provided reference genes

Program Settings