Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr2.2679 Acer truncatum HOM05D004538 ORTHO05D052265 2.1e-61 238.8 120 100.0
Ciclev10008262m.g Citrus clementina HOM05D004538 ORTHO05D006068 3.1e-28 128.6 230 39.1
MD02G1271400 Malus domestica HOM05D004538 ORTHO05D006068 2.9e-26 122.1 231 37.2
Prupe.4G230100 Prunus persica HOM05D004538 ORTHO05D006068 6.5e-26 120.9 231 37.2
Potri.001G469701 Populus trichocarpa HOM05D004538 ORTHO05D006068 1.1e-25 120.2 201 39.8
Potri.011G166800 Populus trichocarpa HOM05D004538 ORTHO05D006068 1.1e-25 120.2 230 37.0
Sabra11G0139500 Salix brachista HOM05D004538 ORTHO05D006068 3.2e-25 118.6 230 36.5
Prupe.8G086500 Prunus persica HOM05D004538 ORTHO05D006068 7.2e-25 117.5 231 36.4
Actinidia00835 Actinidia chinensis HOM05D004538 ORTHO05D006068 2.7e-24 115.5 231 36.4
RcHm_v2.0_Chr6g0267391 Rosa chinensis HOM05D004538 ORTHO05D006068 3.6e-24 115.2 231 35.5
TWI39G0910 Tripterygium wilfordii HOM05D004538 ORTHO05D006068 3.6e-24 115.2 230 35.7
Psat2g005560 Pisum sativum HOM05D004538 ORTHO05D006068 6.1e-24 114.4 97 62.9
GSVIVG01014777001 Vitis vinifera HOM05D004538 ORTHO05D006068 6.1e-24 114.4 231 35.5
CANSAT11G1513 Cannabis sativa HOM05D004538 ORTHO05D006068 8.0e-24 114.0 231 35.1
CSS0012792 Camellia sinensis var. sinensis HOM05D004538 ORTHO05D006068 1.0e-23 113.6 231 35.5
Medtr5g096830 Medicago truncatula HOM05D004538 ORTHO05D006068 1.0e-23 113.6 97 62.9
Aa31LG3G12000 Aethionema arabicum HOM05D004538 ORTHO05D006068 1.4e-23 113.2 64 84.4
BcaC04g20151 Brassica carinata HOM05D004538 ORTHO05D006068 2.3e-23 112.5 230 35.2
Eucgr.F02006 Eucalyptus grandis HOM05D004538 ORTHO05D006068 3.0e-23 112.1 90 62.2
Thhalv10013497m.g Eutrema salsugineum HOM05D004538 ORTHO05D006068 3.0e-23 112.1 90 63.3
Sp6g17940 Schrenkiella parvula HOM05D004538 ORTHO05D006068 3.0e-23 112.1 90 63.3
AL2G22990 Arabidopsis lyrata HOM05D004538 ORTHO05D006068 4.0e-23 111.7 65 81.5
AL2G24490 Arabidopsis lyrata HOM05D004538 ORTHO05D006068 4.0e-23 111.7 65 81.5
AL8G31670 Arabidopsis lyrata HOM05D004538 ORTHO05D006068 4.0e-23 111.7 65 81.5
AL8G31690 Arabidopsis lyrata HOM05D004538 ORTHO05D006068 4.0e-23 111.7 65 81.5
AT5G56090 Arabidopsis thaliana HOM05D004538 ORTHO05D006068 4.0e-23 111.7 65 81.5
Carub.0008s1641 Capsella rubella HOM05D004538 ORTHO05D006068 4.0e-23 111.7 65 81.5
CsaV3_4G008160 Cucumis sativus L. HOM05D004538 ORTHO05D006068 4.0e-23 111.7 231 35.1
Duzib268G1486 Durio zibethinus HOM05D004538 ORTHO05D006068 4.0e-23 111.7 231 36.4
Glyma.02G303400 Glycine max HOM05D004538 ORTHO05D006068 4.0e-23 111.7 65 78.5
Lj8A182T63 Lonicera japonica HOM05D004538 ORTHO05D006068 4.0e-23 111.7 97 61.9
Thecc.07G004000 Theobroma cacao HOM05D004538 ORTHO05D006068 4.0e-23 111.7 65 81.5
BcaB08g35975 Brassica carinata HOM05D004538 ORTHO05D006068 5.2e-23 111.3 64 82.8
BcaC04g20158 Brassica carinata HOM05D004538 ORTHO05D006068 5.2e-23 111.3 64 82.8
A10p13290 Brassica napus HOM05D002718 ORTHO05D003269 5.2e-23 111.3 64 82.8
C09p47240 Brassica napus HOM05D004538 ORTHO05D006068 5.2e-23 111.3 230 35.2
BolC9t57574H Brassica oleracea HOM05D004538 ORTHO05D006068 5.2e-23 111.3 64 82.8
BraA10t43427Z Brassica rapa HOM05D004538 ORTHO05D006068 5.2e-23 111.3 64 82.8
LjContig00081g0007081 Lotus japonicus HOM05D004538 ORTHO05D006068 5.2e-23 111.3 65 80.0
Medtr3g095790 Medicago truncatula HOM05D004538 ORTHO05D006068 5.2e-23 111.3 65 80.0
RcHm_v2.0_Chr5g0075121 Rosa chinensis HOM05D004538 ORTHO05D006068 5.2e-23 111.3 231 35.1
Cc02_g09720 Coffea canephora HOM05D004538 ORTHO05D006068 6.7e-23 110.9 90 65.6
Dinv31347 Davidia involucrata HOM05D004538 ORTHO05D006068 6.7e-23 110.9 65 81.5
Atru.chr2.2684 Acer truncatum HOM05D004538 ORTHO05D006068 8.8e-23 110.5 78 76.9
CARHR269470 Cardamine hirsuta HOM05D004538 ORTHO05D006068 8.8e-23 110.5 231 35.1
Haze_03267 Corylus avellana HOM05D004538 ORTHO05D006068 8.8e-23 110.5 65 81.5
BcaC04g20148 Brassica carinata HOM05D004538 ORTHO05D006068 1.2e-22 110.2 64 81.2
C09p47190 Brassica napus HOM05D002718 ORTHO05D003269 1.2e-22 110.2 64 81.2
CiPaw.15G107100 Carya illinoinensis HOM05D004538 ORTHO05D006068 1.2e-22 110.2 65 80.0
Gohir.D13G132900 Gossypium hirsutum HOM05D004538 ORTHO05D006068 1.2e-22 110.2 231 35.5
Gorai.013G149100 Gossypium raimondii HOM05D004538 ORTHO05D006068 1.2e-22 110.2 231 35.5
Lalb_Chr04g0247681 Lupinus albus HOM05D004538 ORTHO05D006068 1.2e-22 110.2 65 80.0
VMungo0647G1241 Vigna mungo HOM05D004538 ORTHO05D006068 1.2e-22 110.2 97 60.8
arahy.Tifrunner.gnm1.ann1.01YFCZ Arachis hypogaea HOM05D004538 ORTHO05D006068 1.5e-22 109.8 65 78.5
arahy.Tifrunner.gnm1.ann1.0Z7D2W Arachis hypogaea HOM05D004538 ORTHO05D006068 1.5e-22 109.8 65 78.5
Gohir.A13G129700 Gossypium hirsutum HOM05D004538 ORTHO05D006068 1.5e-22 109.8 231 35.5
Lj1C898T12 Lonicera japonica HOM05D004538 ORTHO05D006068 1.5e-22 109.8 228 35.1
SGA_v2.0_scaffold62G21339 Striga asiatica HOM05D004538 ORTHO05D006068 2.0e-22 109.4 90 62.2
Ca_06424_v3 Cicer arietinum L. HOM05D000527 ORTHO05D000559 2.6e-22 109.0 65 76.9
COL.COLO4_07768 Corchorus olitorius HOM05D004538 ORTHO05D006068 2.6e-22 109.0 231 35.9
MELO3C016120.2 Cucumis melo HOM05D004538 ORTHO05D006068 2.6e-22 109.0 242 33.9
ECA236G0032 Erigeron canadensis HOM05D004538 ORTHO05D006068 2.6e-22 109.0 93 61.3
FvH4_3g41910 Fragaria vesca HOM05D004538 ORTHO05D006068 2.6e-22 109.0 231 34.6
Glyma.14G010400 Glycine max HOM05D004538 ORTHO05D006068 2.6e-22 109.0 65 78.5
Hma1.2p1_0321F.1_g124200 Hydrangea macrophylla HOM05D004538 ORTHO05D006068 2.6e-22 109.0 231 34.6
PGR083G1782 Punica granatum HOM05D004538 ORTHO05D006068 2.6e-22 109.0 231 34.6
QL09p046970 Quercus lobata HOM05D004538 ORTHO05D006068 2.6e-22 109.0 65 80.0
unitig_899.g14715 Utricularia gibba HOM05D004538 ORTHO05D006068 2.6e-22 109.0 90 60.0
vmacro09607 Vaccinium macrocarpon HOM05D004538 ORTHO05D006068 2.6e-22 109.0 90 58.9
Atru.chr2.2623 Acer truncatum HOM05D004538 ORTHO05D006068 3.3e-22 108.6 57 93.0
AUR62031724 Chenopodium quinoa HOM05D004538 ORTHO05D006068 4.4e-22 108.2 208 38.5
Cc02_g29800 Coffea canephora HOM05D004538 ORTHO05D006068 4.4e-22 108.2 90 64.4
Lj5g0024294 Lotus japonicus HOM05D004538 ORTHO05D006068 4.4e-22 108.2 65 78.5
Phvul.008G282700 Phaseolus vulgaris HOM05D004538 ORTHO05D006068 4.4e-22 108.2 65 75.4
THA.LOC104811692 Tarenaya hassleriana HOM05D004538 ORTHO05D006068 4.4e-22 108.2 89 65.2
ClCG07G010160 Citrullus lanatus HOM05D004538 ORTHO05D006068 5.7e-22 107.8 242 33.9
FvH4_2g10180 Fragaria vesca HOM05D004538 ORTHO05D006068 5.7e-22 107.8 65 80.0
FAN11G3993 Fragaria x ananassa HOM05D004538 ORTHO05D006068 5.7e-22 107.8 231 34.2
Nitab4.5_0004391g0070 Nicotiana tabacum HOM05D004538 ORTHO05D006068 5.7e-22 107.8 206 37.4
DCAR_013768 Daucus carota HOM05D004538 ORTHO05D006068 7.5e-22 107.5 90 63.3
Cpa.g.sc97.88 Carica papaya HOM05D004538 ORTHO05D006068 9.7e-22 107.1 65 78.5
Oeu036424.1 Olea europaea HOM05D004538 ORTHO05D006068 9.7e-22 107.1 90 58.9
TPR.G1264 Trifolium pratense HOM05D004538 ORTHO05D006068 9.7e-22 107.1 97 59.8
Duzib213G1090 Durio zibethinus HOM05D004538 ORTHO05D006068 1.3e-21 106.7 216 36.1
Migut.F00884 Erythranthe guttata HOM05D004538 ORTHO05D006068 1.3e-21 106.7 90 62.2
FAN21G0976 Fragaria x ananassa HOM05D004538 ORTHO05D006068 1.3e-21 106.7 231 33.8
FAN24G0261 Fragaria x ananassa HOM05D004538 ORTHO05D006068 1.3e-21 106.7 65 78.5
Lsat_1_v5_gn_7_116401 Lactuca sativa HOM05D004538 ORTHO05D006068 1.7e-21 106.3 93 60.2
MD07G1040600 Malus domestica HOM05D004538 ORTHO05D006068 2.2e-21 105.9 232 34.1
HanXRQChr04g0114571 Helianthus annuus HOM05D004538 ORTHO05D006068 3.7e-21 105.1 93 58.1
HanXRQChr11g0334561 Helianthus annuus HOM05D004538 ORTHO05D006068 3.7e-21 105.1 93 58.1
Nitab4.5_0001437g0060 Nicotiana tabacum HOM05D004538 ORTHO05D006068 4.8e-21 104.8 90 57.8
EL10Ac2g02751 Beta vulgaris HOM05D004538 ORTHO05D006068 6.3e-21 104.4 86 66.3
FAN25G0511 Fragaria x ananassa HOM05D004538 ORTHO05D006068 6.3e-21 104.4 231 32.9
Hund25422 Selenicereus undatus HOM05D004538 ORTHO05D006068 6.3e-21 104.4 65 76.9
TAR626G1654 Trochodendron aralioides HOM05D004538 ORTHO05D006068 8.3e-21 104.0 230 33.9
AUR62032611 Chenopodium quinoa HOM05D004538 ORTHO05D006068 1.8e-20 102.8 71 73.2
Sed0002758 Sechium edule HOM05D004538 ORTHO05D006068 1.8e-20 102.8 65 72.3
Ah.12g065010 Amaranthus hybridus HOM05D004538 ORTHO05D006068 2.4e-20 102.4 65 75.4
ATR0751G112 Amborella trichopoda HOM05D004538 ORTHO05D006068 3.1e-20 102.1 65 72.3
AUR62001067 Chenopodium quinoa HOM05D004538 ORTHO05D006068 3.1e-20 102.1 71 73.2
MBI14_g30901_MAGBIO Magnolia biondii HOM05D004538 ORTHO05D006068 4.1e-20 101.7 65 73.8
Aqoxy7G01640 Aquilegia oxysepala HOM05D004538 ORTHO05D006068 9.1e-20 100.5 64 73.4
Nitab4.5_0005622g0040 Nicotiana tabacum HOM05D004538 ORTHO05D006068 9.1e-20 100.5 90 55.6
Peaxi162Scf00173g00324 Petunia axillaris HOM05D004538 ORTHO05D006068 1.2e-19 100.1 90 56.7
Solyc11g007000.2 Solanum lycopersicum HOM05D004538 ORTHO05D006068 1.2e-19 100.1 90 56.7
Sopen11g002920 Solanum pennellii HOM05D004538 ORTHO05D006068 1.2e-19 100.1 90 56.7
PGSC0003DMG400023975 Solanum tuberosum HOM05D004538 ORTHO05D006068 1.2e-19 100.1 90 56.7
HPP92_015457 Vanilla planifolia HOM05D004538 ORTHO05D006068 1.2e-19 100.1 91 54.9
Cc02_g29790 Coffea canephora HOM05D004538 ORTHO05D006068 1.6e-19 99.8 68 72.1
Nn1g08442 Nelumbo nucifera HOM05D004538 ORTHO05D006068 1.6e-19 99.8 71 70.4
Zm00001eb033900 Zea mays HOM05D004538 ORTHO05D006068 1.6e-19 99.8 92 58.7
Os08g0496000 Oryza sativa ssp. japonica HOM05D004538 ORTHO05D006068 2.0e-19 99.4 89 57.3
PSO675G3744 Papaver somniferum HOM05D004538 ORTHO05D006068 2.7e-19 99.0 64 71.9
CAN.G645.5 Capsicum annuum HOM05D004538 ORTHO05D006068 3.5e-19 98.6 90 55.6
PSO541G6331 Papaver somniferum HOM05D004538 ORTHO05D006068 4.5e-19 98.2 64 71.9
Sc07g0002240 Simmondsia chinensis HOM05D004538 ORTHO05D006068 7.7e-19 97.4 66 72.7
Cc02_g29840 Coffea canephora HOM05D004538 ORTHO05D006068 1.0e-18 97.1 61 75.4
Hund19415 Selenicereus undatus HOM05D004538 ORTHO05D006068 1.0e-18 97.1 65 72.3
SalBow6G4226 Salvia bowleyana HOM05D004538 ORTHO05D006068 2.2e-18 95.9 91 54.9
PSO063G5767 Papaver somniferum HOM05D004538 ORTHO05D006068 2.9e-18 95.5 230 32.2
SEGI_29632 Sequoiadendron giganteum HOM05D004538 ORTHO05D006068 8.5e-18 94.0 64 68.8
CDE03G0061 Ceratophyllum demersum HOM05D004538 ORTHO05D006068 7.2e-17 90.9 68 64.7
CDE06G0653 Ceratophyllum demersum HOM05D004538 ORTHO05D006068 1.6e-16 89.7 68 64.7
CDE02G3208 Ceratophyllum demersum HOM05D004538 ORTHO05D006068 1.5e-14 83.2 64 56.2
Mapoly0020s0071 Marchantia polymorpha HOM05D004538 ORTHO05D006068 1.3e-13 80.1 65 61.5
SalBow6G3380 Salvia bowleyana HOM05D004538 ORTHO05D006068 1.3e-13 80.1 79 51.9
BolC9t57580H Brassica oleracea HOM05D004538 ORTHO05D006068 6.3e-13 77.8 179 35.8
A10p13310 Brassica napus HOM05D004538 ORTHO05D006068 1.8e-12 76.3 64 60.9
Pp3c7_5710 Physcomitrium patens HOM05D004538 ORTHO05D006068 3.1e-12 75.5 64 60.9
Atru.chr2.2641 Acer truncatum HOM05D004538 ORTHO05D052874 9.1e-12 73.9 48 79.2
Aa31LG3G11950 Aethionema arabicum HOM05D004538 ORTHO05D006068 2.7e-11 72.4 51 72.5
AagrBONN_evm.TU.Sc2ySwM_368.2501 Anthoceros agrestis HOM05D004538 ORTHO05D006068 3.5e-11 72.0 96 45.8
QL03p014007 Quercus lobata HOM05D001565 ORTHO05D005515 1.3e-10 70.1 63 57.1
Manes.01G005033 Manihot esculenta HOM05D004538 ORTHO05D006068 8.6e-10 67.4 44 75.0
CBR_g24146 Chara braunii HOM05D004538 ORTHO05D006068 7.2e-09 64.3 90 45.6
SMO353G0004 Selaginella moellendorffii HOM05D004538 ORTHO05D006068 1.2e-08 63.5 66 50.0
Cre02.g082700 Chlamydomonas reinhardtii HOM05D004538 ORTHO05D006068 1.4e-07 60.1 74 45.9
PRCOL_00000259 Prasinoderma coloniale HOM05D004538 ORTHO05D006068 1.4e-07 60.1 93 36.6


User provided reference genes

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