Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr2.2664 Acer truncatum HOM05D000300 ORTHO05D008505 2.2e-97 359.8 322 100.0
Manes.03G111900 Manihot esculenta HOM05D000300 ORTHO05D008505 5.0e-81 305.4 174 88.5
Duzib213G0972 Durio zibethinus HOM05D000300 ORTHO05D008505 3.6e-79 299.3 174 86.8
Thecc.07G080900 Theobroma cacao HOM05D000300 ORTHO05D008505 1.0e-78 297.7 174 86.2
Gohir.A04G028900 Gossypium hirsutum HOM05D000300 ORTHO05D008505 1.4e-78 297.4 174 85.6
Gohir.D05G358300 Gossypium hirsutum HOM05D000300 ORTHO05D008505 1.4e-78 297.4 174 85.6
Gorai.009G390800 Gossypium raimondii HOM05D000300 ORTHO05D008505 3.0e-78 296.2 174 85.6
Ciclev10007647m.g Citrus clementina HOM05D000300 ORTHO05D000383 8.8e-78 294.7 174 85.6
Cc05_g12170 Coffea canephora HOM05D000300 ORTHO05D000383 3.4e-77 292.7 174 85.1
Potri.011G121000 Populus trichocarpa HOM05D000300 ORTHO05D008505 5.7e-77 292.0 172 85.5
Dinv04313 Davidia involucrata HOM05D000300 ORTHO05D008505 7.5e-77 291.6 174 85.1
CiPaw.11G167900 Carya illinoinensis HOM05D000300 ORTHO05D008505 2.2e-76 290.0 173 85.0
CSS0002162 Camellia sinensis var. sinensis HOM05D000300 ORTHO05D008505 1.8e-75 287.0 174 82.8
Nn1g06576 Nelumbo nucifera HOM05D000300 ORTHO05D008505 2.4e-75 286.6 175 82.9
CANSAT56G2812 Cannabis sativa HOM05D000300 ORTHO05D008505 4.1e-75 285.8 174 83.9
FvH4_3g20100 Fragaria vesca HOM05D000300 ORTHO05D008505 7.0e-75 285.0 169 82.8
Sabra11G0105000 Salix brachista HOM05D000300 ORTHO05D008505 7.0e-75 285.0 173 85.5
VMungo1080G0699 Vigna mungo HOM05D000300 ORTHO05D008505 9.2e-75 284.6 174 82.8
FAN11G2262 Fragaria x ananassa HOM05D000300 ORTHO05D008505 1.2e-74 284.3 168 83.3
arahy.Tifrunner.gnm1.ann1.UT5NS3 Arachis hypogaea HOM05D000300 ORTHO05D008505 1.6e-74 283.9 174 82.8
arahy.Tifrunner.gnm1.ann1.Z7GNQ3 Arachis hypogaea HOM05D000300 ORTHO05D008505 1.6e-74 283.9 174 82.8
ClCG10G006870 Citrullus lanatus HOM05D000300 ORTHO05D008505 1.6e-74 283.9 174 82.8
Glyma.12G223300 Glycine max HOM05D000300 ORTHO05D008505 2.0e-74 283.5 174 81.6
Phvul.005G071500 Phaseolus vulgaris HOM05D000300 ORTHO05D008505 2.7e-74 283.1 174 82.2
MELO3C016520.2 Cucumis melo HOM05D000300 ORTHO05D008505 3.5e-74 282.7 174 82.2
Aqoxy1G02483 Aquilegia oxysepala HOM05D000300 ORTHO05D008505 4.5e-74 282.3 171 83.6
Lalb_Chr20g0109791 Lupinus albus HOM05D000300 ORTHO05D008505 4.5e-74 282.3 173 82.7
Prupe.4G183600 Prunus persica HOM05D000300 ORTHO05D008505 4.5e-74 282.3 172 82.6
CsaV3_3G006220 Cucumis sativus L. HOM05D000300 ORTHO05D008505 5.9e-74 282.0 174 81.6
FAN21G2789 Fragaria x ananassa HOM05D000300 ORTHO05D008505 5.9e-74 282.0 168 82.7
Oeu060546.1 Olea europaea HOM05D000300 ORTHO05D008505 5.9e-74 282.0 172 82.0
RcHm_v2.0_Chr5g0033901 Rosa chinensis HOM05D000300 ORTHO05D008505 5.9e-74 282.0 168 82.7
QL08p020830 Quercus lobata HOM05D000300 ORTHO05D008505 7.7e-74 281.6 173 80.3
Peaxi162Scf00000g00412 Petunia axillaris HOM05D000300 ORTHO05D008505 1.0e-73 281.2 172 81.4
Lj3g0005060 Lotus japonicus HOM05D000300 ORTHO05D008505 2.3e-73 280.0 172 82.6
TWI38G1039 Tripterygium wilfordii HOM05D000300 ORTHO05D008505 3.8e-73 279.3 174 80.5
vmacro11851 Vaccinium macrocarpon HOM05D000300 ORTHO05D008505 3.8e-73 279.3 174 80.5
Glyma.13G278100 Glycine max HOM05D000300 ORTHO05D008505 8.6e-73 278.1 173 82.1
Medtr2g079460 Medicago truncatula HOM05D000300 ORTHO05D008505 8.6e-73 278.1 174 81.6
Psat3g101080 Pisum sativum HOM05D000300 ORTHO05D008505 1.9e-72 276.9 173 81.5
PGSC0003DMG400015358 Solanum tuberosum HOM05D000300 ORTHO05D008505 1.9e-72 276.9 172 79.7
Hma1.2p1_1618F.1_g293900 Hydrangea macrophylla HOM05D000300 ORTHO05D008505 2.5e-72 276.6 172 80.8
GSVIVG01014363001 Vitis vinifera HOM05D000300 ORTHO05D000383 4.3e-72 275.8 174 80.5
Cpa.g.sc80.49 Carica papaya HOM05D000300 ORTHO05D008505 7.3e-72 275.0 167 83.2
PSO541G3772 Papaver somniferum HOM05D000300 ORTHO05D008505 9.5e-72 274.6 175 79.4
MD11G1245300 Malus domestica HOM05D000300 ORTHO05D008505 1.2e-71 274.2 172 80.2
MD03G1225800 Malus domestica HOM05D000300 ORTHO05D008505 2.8e-71 273.1 174 78.7
PSO675G9140 Papaver somniferum HOM05D000300 ORTHO05D008505 3.6e-71 272.7 175 78.9
THA.LOC104813391 Tarenaya hassleriana HOM05D000300 ORTHO05D008505 3.6e-71 272.7 174 77.6
PGR031G2267 Punica granatum HOM05D000300 ORTHO05D008505 6.1e-71 271.9 174 79.9
TPR.G38968 Trifolium pratense HOM05D000300 ORTHO05D008505 6.1e-71 271.9 173 79.8
HPP92_025994 Vanilla planifolia HOM05D000300 ORTHO05D008505 8.0e-71 271.6 174 78.2
MSTRG.6839 Avicennia marina HOM05D000300 ORTHO05D008505 1.8e-70 270.4 172 80.2
Os04g0530300 Oryza sativa ssp. japonica HOM05D000300 ORTHO05D008505 2.3e-70 270.0 171 77.8
DCAR_013093 Daucus carota HOM05D000300 ORTHO05D008505 8.9e-70 268.1 172 80.8
Migut.M00819 Erythranthe guttata HOM05D000300 ORTHO05D008505 1.5e-69 267.3 169 78.7
Thhalv10013922m.g Eutrema salsugineum HOM05D000300 ORTHO05D008505 1.7e-68 263.8 174 76.4
Haze_09412 Corylus avellana HOM05D000300 ORTHO05D008505 4.9e-68 262.3 172 79.7
SalBow7G1295 Salvia bowleyana HOM05D000300 ORTHO05D008505 1.1e-67 261.2 170 78.8
SalBow7G3546 Salvia bowleyana HOM05D000300 ORTHO05D008505 1.1e-67 261.2 170 78.8
BcaC04g20418 Brassica carinata HOM05D000300 ORTHO05D008505 7.0e-67 258.5 174 74.1
A10p11170 Brassica napus HOM05D000300 ORTHO05D008505 7.0e-67 258.5 174 74.1
C09p43740 Brassica napus HOM05D000300 ORTHO05D008505 7.0e-67 258.5 174 74.1
BolC9t57259H Brassica oleracea HOM05D000300 ORTHO05D008505 7.0e-67 258.5 174 74.1
BraA10t43209Z Brassica rapa HOM05D000300 ORTHO05D008505 7.0e-67 258.5 174 74.1
BcaB08g35739 Brassica carinata HOM05D000300 ORTHO05D008505 1.6e-66 257.3 174 73.6
SGA_v2.0_scaffold34G13828 Striga asiatica HOM05D000300 ORTHO05D008505 1.6e-66 257.3 206 68.0
Sp6g15870 Schrenkiella parvula HOM05D000300 ORTHO05D008505 2.7e-66 256.5 174 73.6
Carub.0008s1409 Capsella rubella HOM05D000300 ORTHO05D008505 4.6e-66 255.8 174 74.1
AL8G28840 Arabidopsis lyrata HOM05D000300 ORTHO05D008505 7.8e-66 255.0 174 74.1
AT5G53800 Arabidopsis thaliana HOM05D000300 ORTHO05D008505 7.8e-66 255.0 174 74.1
Sed0021435 Sechium edule HOM05D000300 ORTHO05D008505 3.0e-65 253.1 174 75.3
Solyc12g013790.3 Solanum lycopersicum HOM05D000300 ORTHO05D008505 3.0e-65 253.1 172 73.8
ATR0680G062 Amborella trichopoda HOM05D000300 ORTHO05D008505 2.5e-64 250.0 170 74.7
Nitab4.5_0007374g0020 Nicotiana tabacum HOM05D000300 ORTHO05D008505 3.3e-64 249.6 221 62.9
Sopen12g007100 Solanum pennellii HOM05D000300 ORTHO05D008505 5.6e-64 248.8 171 73.1
Aa31LG3G10120 Aethionema arabicum HOM05D000300 ORTHO05D008505 7.3e-64 248.4 202 64.4
Hma1.2p1_1738F.1_g299980 Hydrangea macrophylla HOM05D000300 ORTHO05D008505 9.5e-64 248.1 172 75.0
Sc16g0006940 Simmondsia chinensis HOM05D000300 ORTHO05D008505 2.1e-63 246.9 198 67.2
SEGI_35024 Sequoiadendron giganteum HOM05D000300 ORTHO05D008505 4.0e-62 242.7 166 70.5
ECA240G3136 Erigeron canadensis HOM05D000300 ORTHO05D008505 1.5e-61 240.7 166 74.7
Zm00001eb075780 Zea mays HOM05D000300 ORTHO05D008505 2.6e-61 240.0 156 76.3
Mapoly0026s0140 Marchantia polymorpha HOM05D000300 ORTHO05D008505 4.9e-60 235.7 163 71.2
Rhsim06G0197200 Rhododendron simsii HOM05D000300 ORTHO05D008505 6.4e-60 235.3 150 80.7
Hund02219 Selenicereus undatus HOM05D000300 ORTHO05D008505 6.4e-60 235.3 171 72.5
Lsat_1_v5_gn_9_97040 Lactuca sativa HOM05D000300 ORTHO05D008505 8.3e-60 235.0 168 72.0
Ca_01834_v3 Cicer arietinum L. HOM05D000300 ORTHO05D008505 1.2e-58 231.1 149 80.5
CDE02G0965 Ceratophyllum demersum HOM05D000300 ORTHO05D008505 6.6e-57 225.3 150 76.7
Ah.04g164930 Amaranthus hybridus HOM05D000300 ORTHO05D008505 1.1e-56 224.6 169 68.0
unitig_747.g21571 Utricularia gibba HOM05D000300 ORTHO05D008505 1.5e-56 224.2 160 74.4
HanXRQChr03g0078531 Helianthus annuus HOM05D000300 ORTHO05D008505 2.5e-56 223.4 156 73.1
MD11G1245600 Malus domestica HOM05D000300 ORTHO05D008505 1.6e-55 220.7 152 75.7
Nitab4.5_0000662g0230 Nicotiana tabacum HOM05D000300 ORTHO05D008505 4.7e-55 219.2 193 62.7
Pp3c25_13690 Physcomitrium patens HOM05D000300 ORTHO05D008505 1.8e-54 217.2 174 64.9
AagrBONN_evm.TU.Sc2ySwM_340.171 Anthoceros agrestis HOM05D000300 ORTHO05D008505 4.4e-53 212.6 165 64.2
SMO367G0821 Selaginella moellendorffii HOM05D000300 ORTHO05D008505 7.8e-50 201.8 149 68.5
CDE01G0218 Ceratophyllum demersum HOM05D005098 ORTHO05D006646 1.7e-49 200.7 131 74.0
FAN16G2347 Fragaria x ananassa HOM05D000300 ORTHO05D008505 2.2e-44 183.7 118 79.7
Actinidia12817 Actinidia chinensis HOM05D000300 ORTHO05D008505 7.1e-35 152.1 73 94.5
AUR62029376 Chenopodium quinoa HOM05D000300 ORTHO05D008505 9.6e-32 141.7 108 70.4
AUR62034261 Chenopodium quinoa HOM05D000300 ORTHO05D008505 2.8e-31 140.2 108 69.4
COL.COLO4_09413 Corchorus olitorius HOM05D000300 ORTHO05D008505 1.8e-30 137.5 93 81.7
FAN25G2371 Fragaria x ananassa HOM05D000300 ORTHO05D008505 1.7e-28 131.0 65 92.3
MD11G1132100 Malus domestica HOM05D000300 ORTHO05D008505 2.9e-28 130.2 70 84.3
EL10Ac4g08146 Beta vulgaris HOM05D000300 ORTHO05D008505 1.8e-25 120.9 124 58.1
Cre03.g176050 Chlamydomonas reinhardtii HOM05D000300 ORTHO05D008505 4.3e-24 116.3 163 41.7
MCO10G111 Micromonas commoda HOM05D000300 ORTHO05D008505 5.6e-24 115.9 176 39.8
Nn1g04059 Nelumbo nucifera HOM05D000300 ORTHO05D008505 5.6e-24 115.9 104 61.5
CBR_g12199 Chara braunii HOM05D000300 ORTHO05D008505 4.8e-23 112.8 71 71.8
GSVIVG01021702001 Vitis vinifera HOM05D000300 ORTHO05D008505 6.4e-20 102.4 78 75.6
GSVIVG01021454001 Vitis vinifera HOM05D000300 ORTHO05D008505 4.2e-19 99.8 78 73.1
arahy.Tifrunner.gnm1.ann1.MM4FDC Arachis hypogaea HOM05D000300 ORTHO05D008505 1.6e-18 97.8 82 68.3
TAR626G1261 Trochodendron aralioides HOM05D000300 ORTHO05D008505 7.9e-18 95.5 65 81.5
AL8G13240 Arabidopsis lyrata HOM05D000300 ORTHO05D008505 1.6e-15 87.8 67 65.7
FAN25G3258 Fragaria x ananassa HOM05D000300 ORTHO05D008505 3.4e-13 80.1 64 64.1
arahy.Tifrunner.gnm1.ann1.5AH57W Arachis hypogaea HOM05D000300 ORTHO05D008505 4.9e-12 76.3 51 82.4
arahy.Tifrunner.gnm1.ann1.F96EFF Arachis hypogaea HOM05D003444 ORTHO05D008505 4.6e-10 69.7 63 65.1
arahy.Tifrunner.gnm1.ann1.MF7AUF Arachis hypogaea HOM05D003391 ORTHO05D008505 6.0e-10 69.3 40 87.5
GSVIVG01014364001 Vitis vinifera HOM05D000300 ORTHO05D008505 7.9e-10 68.9 32 93.8
arahy.Tifrunner.gnm1.ann1.1E0HE3 Arachis hypogaea HOM05D001903 ORTHO05D013215 2.8e-07 60.5 47 74.5


User provided reference genes

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