Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr2.2636 Acer truncatum HOM05D000397 ORTHO05D002023 6.2e-143 510.8 255 100.0
Atru.chr2.2620 Acer truncatum HOM05D000397 ORTHO05D002023 2.4e-78 296.2 161 88.8
Atru.chr2.2698 Acer truncatum HOM05D000397 ORTHO05D002023 5.4e-78 295.0 161 88.8
Atru.chr2.2627 Acer truncatum HOM05D000397 ORTHO05D002023 4.9e-71 271.9 159 83.0
Atru.chr2.2688 Acer truncatum HOM05D000397 ORTHO05D002023 2.6e-56 223.0 115 93.0
Ciclev10010435m.g Citrus clementina HOM05D000397 ORTHO05D002023 1.2e-37 161.0 143 55.2
Atru.chr2.2687 Acer truncatum HOM05D000397 ORTHO05D002023 1.6e-26 124.0 103 68.9
GSVIVG01014347001 Vitis vinifera HOM05D000397 ORTHO05D002023 3.6e-26 122.9 173 41.0
Manes.15G173200 Manihot esculenta HOM05D000397 ORTHO05D002023 2.9e-23 113.2 180 40.0
Duzib268G1410 Durio zibethinus HOM05D000397 ORTHO05D002023 5.4e-22 109.0 250 32.8
Duzib213G0908 Durio zibethinus HOM05D000397 ORTHO05D002023 3.5e-21 106.3 204 34.8
Gohir.D05G356300 Gossypium hirsutum HOM05D000397 ORTHO05D002023 7.9e-21 105.1 199 37.2
Gohir.D05G356600 Gossypium hirsutum HOM05D000397 ORTHO05D002023 1.0e-20 104.8 166 39.8
Gorai.N016800 Gossypium raimondii HOM05D000397 ORTHO05D002023 1.0e-20 104.8 166 39.8
Thecc.07G088400 Theobroma cacao HOM05D000397 ORTHO05D002023 1.3e-20 104.4 187 33.7
Duzib268G0967 Durio zibethinus HOM05D000397 ORTHO05D002023 2.3e-20 103.6 206 35.4
Gohir.A04G029908 Gossypium hirsutum HOM05D000397 ORTHO05D002023 6.7e-20 102.1 169 38.5
Gorai.009G389300 Gossypium raimondii HOM05D000397 ORTHO05D002023 6.7e-20 102.1 169 39.6
Gorai.009G388500 Gossypium raimondii HOM05D000397 ORTHO05D002023 8.7e-20 101.7 147 40.8
Dinv04308 Davidia involucrata HOM05D000397 ORTHO05D002023 1.1e-19 101.3 154 40.3
Gohir.D05G356400 Gossypium hirsutum HOM05D000397 ORTHO05D002023 1.1e-19 101.3 171 39.2
Gohir.D05G356900 Gossypium hirsutum HOM05D000397 ORTHO05D002023 1.5e-19 100.9 169 39.1
Thecc.07G088700 Theobroma cacao HOM05D000397 ORTHO05D002023 1.5e-19 100.9 188 32.4
TAR624G1261 Trochodendron aralioides HOM05D000397 ORTHO05D002023 3.3e-19 99.8 238 31.5
Ciclev10010518m.g Citrus clementina HOM05D000397 ORTHO05D002023 4.3e-19 99.4 166 39.2
Gohir.A04G030200 Gossypium hirsutum HOM05D000397 ORTHO05D002023 7.4e-19 98.6 159 38.4
Gohir.A01G064000 Gossypium hirsutum HOM05D000397 ORTHO05D002023 9.6e-19 98.2 159 37.7
Gohir.D01G050700 Gossypium hirsutum HOM05D000397 ORTHO05D002023 1.3e-18 97.8 159 38.4
Gorai.002G070600 Gossypium raimondii HOM05D000397 ORTHO05D002023 1.6e-18 97.4 159 38.4
Gohir.D05G356001 Gossypium hirsutum HOM05D000397 ORTHO05D002023 4.8e-18 95.9 131 42.0
Gohir.D05G356500 Gossypium hirsutum HOM05D000397 ORTHO05D002023 4.8e-18 95.9 131 40.5
Potri.003G087400 Populus trichocarpa HOM05D000397 ORTHO05D002023 4.8e-18 95.9 158 40.5
Gorai.009G388800 Gossypium raimondii HOM05D000397 ORTHO05D002023 1.8e-17 94.0 131 42.7
GSVIVG01014344001 Vitis vinifera HOM05D000397 ORTHO05D002023 3.1e-17 93.2 176 35.8
Gohir.D05G356100 Gossypium hirsutum HOM05D000397 ORTHO05D002023 4.0e-17 92.8 157 39.5
Sabra03G0057200 Salix brachista HOM05D000397 ORTHO05D002023 9.0e-17 91.7 140 40.0
Atru.chr2.2699 Acer truncatum HOM05D000397 ORTHO05D002023 7.6e-16 88.6 233 32.2
COL.COLO4_24815 Corchorus olitorius HOM05D000397 ORTHO05D002023 7.6e-16 88.6 153 35.9
Nn1g06534 Nelumbo nucifera HOM05D000397 ORTHO05D002023 7.6e-16 88.6 173 33.5
COL.COLO4_24814 Corchorus olitorius HOM05D000397 ORTHO05D002023 1.3e-15 87.8 139 41.7
Phvul.001G079400 Phaseolus vulgaris HOM05D000397 ORTHO05D002023 1.4e-14 84.3 147 35.4
Gohir.D05G356866 Gossypium hirsutum HOM05D000397 ORTHO05D002023 1.9e-14 84.0 223 33.2
Sabra03G0057300 Salix brachista HOM05D000397 ORTHO05D002023 1.9e-14 84.0 130 37.7
Haze_09422 Corylus avellana HOM05D000397 ORTHO05D002023 7.1e-14 82.0 160 31.9
Thecc.07G089000 Theobroma cacao HOM05D000397 ORTHO05D002023 7.1e-14 82.0 129 40.3
CSS0009049 Camellia sinensis var. sinensis HOM05D000397 ORTHO05D002023 1.2e-13 81.3 222 30.6
Rhsim04G0020600 Rhododendron simsii HOM05D000397 ORTHO05D002023 2.1e-13 80.5 158 31.6
QL08p021666 Quercus lobata HOM05D000397 ORTHO05D002023 4.6e-13 79.3 172 31.4
CSS0048812 Camellia sinensis var. sinensis HOM05D000397 ORTHO05D002023 6.0e-13 79.0 151 35.1
QL08p021701 Quercus lobata HOM05D000397 ORTHO05D002023 7.9e-13 78.6 165 30.9
CSS0002760 Camellia sinensis var. sinensis HOM05D000397 ORTHO05D002023 1.0e-12 78.2 151 35.1
CSS0024633 Camellia sinensis var. sinensis HOM05D000397 ORTHO05D002023 1.3e-12 77.8 139 35.3
PSO541G5412 Papaver somniferum HOM05D000397 ORTHO05D002023 1.3e-12 77.8 141 35.5
PSO675G7294 Papaver somniferum HOM05D000397 ORTHO05D002023 1.3e-12 77.8 141 35.5
Eucgr.F01124 Eucalyptus grandis HOM05D000397 ORTHO05D002023 1.8e-12 77.4 135 35.6
VMungo1383G3263 Vigna mungo HOM05D000397 ORTHO05D002023 1.8e-12 77.4 152 32.9
CSS0003130 Camellia sinensis var. sinensis HOM05D000397 ORTHO05D002023 2.3e-12 77.0 150 29.3
CSS0038494 Camellia sinensis var. sinensis HOM05D000397 ORTHO05D002023 2.3e-12 77.0 141 34.8
MBI07_g30172_MAGBIO Magnolia biondii HOM05D000397 ORTHO05D002023 3.0e-12 76.6 148 32.4
QL03p071110 Quercus lobata HOM05D000397 ORTHO05D002023 3.0e-12 76.6 203 29.6
CSS0011471 Camellia sinensis var. sinensis HOM05D000397 ORTHO05D002023 3.9e-12 76.3 151 30.5
PGR083G1019 Punica granatum HOM05D000397 ORTHO05D002023 3.9e-12 76.3 169 34.9
CSS0033816 Camellia sinensis var. sinensis HOM05D000397 ORTHO05D002023 6.7e-12 75.5 150 29.3
Ciclev10010651m.g Citrus clementina HOM05D000397 ORTHO05D002023 6.7e-12 75.5 157 34.4
Atru.chr2.2619 Acer truncatum HOM05D000397 ORTHO05D002023 8.7e-12 75.1 220 29.5
Cc05_g12090 Coffea canephora HOM05D000397 ORTHO05D002023 8.7e-12 75.1 173 34.1
COL.COLO4_09388 Corchorus olitorius HOM05D000397 ORTHO05D002023 8.7e-12 75.1 131 38.2
Eucgr.F01122 Eucalyptus grandis HOM05D000397 ORTHO05D002023 8.7e-12 75.1 136 35.3
Thecc.07G088900 Theobroma cacao HOM05D000397 ORTHO05D002023 1.5e-11 74.3 156 35.9
Dinv07559 Davidia involucrata HOM05D000397 ORTHO05D002023 1.9e-11 73.9 187 29.4
Medtr2g079310 Medicago truncatula HOM05D000397 ORTHO05D002023 2.5e-11 73.6 148 36.5
Cfa020591 Carpinus fangiana HOM05D000397 ORTHO05D002023 3.3e-11 73.2 159 30.8
Lalb_Chr01g0016881 Lupinus albus HOM05D000397 ORTHO05D002023 3.3e-11 73.2 132 33.3
Glyma.13G277500 Glycine max HOM05D000397 ORTHO05D002023 4.3e-11 72.8 151 32.5
CiPaw.09G060200 Carya illinoinensis HOM05D000397 ORTHO05D002023 5.7e-11 72.4 135 36.3
Gorai.007G322400 Gossypium raimondii HOM05D000397 ORTHO05D002023 5.7e-11 72.4 130 33.8
Hma1.2p1_0885F.1_g232630 Hydrangea macrophylla HOM05D000397 ORTHO05D002023 5.7e-11 72.4 134 34.3
Hma1.2p1_0885F.1_g232635 Hydrangea macrophylla HOM05D000397 ORTHO05D002023 5.7e-11 72.4 134 34.3
Phvul.005G065300 Phaseolus vulgaris HOM05D000397 ORTHO05D002023 9.6e-11 71.6 150 34.7
Glyma.06G244800 Glycine max HOM05D000397 ORTHO05D002023 1.3e-10 71.2 156 30.8
Rhsim04G0020700 Rhododendron simsii HOM05D000397 ORTHO05D002023 1.6e-10 70.9 130 30.0
CiPaw.11G169100 Carya illinoinensis HOM05D000397 ORTHO05D002023 2.8e-10 70.1 201 29.9
CDE10G0305 Ceratophyllum demersum HOM05D000397 ORTHO05D002023 2.8e-10 70.1 142 31.0
DCAR_013102 Daucus carota HOM05D000397 ORTHO05D002023 3.7e-10 69.7 139 32.4
Gorai.009G389200 Gossypium raimondii HOM05D000397 ORTHO05D002023 6.3e-10 68.9 168 33.3
Lalb_Chr25g0286401 Lupinus albus HOM05D000397 ORTHO05D002023 6.3e-10 68.9 162 32.1
Rhsim04G0021000 Rhododendron simsii HOM05D000397 ORTHO05D002023 6.3e-10 68.9 147 30.6
Duzib213G0914 Durio zibethinus HOM05D000397 ORTHO05D002023 8.2e-10 68.6 234 31.2
SGA_v2.0_scaffold9G04921 Striga asiatica HOM05D000397 ORTHO05D002023 1.1e-09 68.2 164 34.1
Lj3g0026221 Lotus japonicus HOM05D000397 ORTHO05D002023 1.4e-09 67.8 153 32.0
Hma1.2p1_0785F.1_g217460 Hydrangea macrophylla HOM05D000397 ORTHO05D002023 1.8e-09 67.4 152 32.2
Medtr2g079300 Medicago truncatula HOM05D000397 ORTHO05D002023 1.8e-09 67.4 145 29.7
Migut.H01933 Erythranthe guttata HOM05D000397 ORTHO05D002023 5.3e-09 65.9 144 31.2
Prupe.4G181700 Prunus persica HOM05D000397 ORTHO05D002023 5.3e-09 65.9 173 31.2
SalBow7G3370 Salvia bowleyana HOM05D000397 ORTHO05D002023 5.3e-09 65.9 150 31.3
Psat5g244640 Pisum sativum HOM05D000397 ORTHO05D002023 1.2e-08 64.7 130 30.8
Psat5g242840 Pisum sativum HOM05D000397 ORTHO05D002023 1.5e-08 64.3 158 31.6
RcHm_v2.0_Chr5g0034201 Rosa chinensis HOM05D000397 ORTHO05D002023 2.0e-08 63.9 154 33.1
Gohir.A10G025800 Gossypium hirsutum HOM05D000397 ORTHO05D002023 2.6e-08 63.5 173 30.6
TPR.G40575 Trifolium pratense HOM05D000397 ORTHO05D002023 4.5e-08 62.8 146 32.9
Dinv40561 Davidia involucrata HOM05D000397 ORTHO05D002023 5.8e-08 62.4 153 31.4
Prupe.4G182000 Prunus persica HOM05D000397 ORTHO05D002023 5.8e-08 62.4 138 33.3
Lsat_1_v5_gn_9_96680 Lactuca sativa HOM05D000397 ORTHO05D002023 7.6e-08 62.0 175 33.1
RcHm_v2.0_Chr5g0034271 Rosa chinensis HOM05D000397 ORTHO05D002023 7.6e-08 62.0 163 33.1
Glyma.12G224000 Glycine max HOM05D000397 ORTHO05D002023 1.3e-07 61.2 149 31.5
MSTRG.14360 Avicennia marina HOM05D000397 ORTHO05D002023 2.2e-07 60.5 164 31.7
Ca_01838_v3 Cicer arietinum L. HOM05D000397 ORTHO05D002023 2.2e-07 60.5 147 32.7
TPR.G38966 Trifolium pratense HOM05D000397 ORTHO05D002023 2.2e-07 60.5 146 32.2
TPR.G38996 Trifolium pratense HOM05D000397 ORTHO05D002023 2.2e-07 60.5 149 30.9
FAN21G2793 Fragaria x ananassa HOM05D000397 ORTHO05D002023 2.9e-07 60.1 163 29.4
FAN25G1777 Fragaria x ananassa HOM05D000397 ORTHO05D002023 2.9e-07 60.1 149 30.9
Lj1C844T5 Lonicera japonica HOM05D000397 ORTHO05D002023 2.9e-07 60.1 190 30.0
FAN11G4036 Fragaria x ananassa HOM05D000397 ORTHO05D002023 3.8e-07 59.7 163 29.4
Prupe.4G047300 Prunus persica HOM05D000397 ORTHO05D002023 3.8e-07 59.7 201 31.3
RcHm_v2.0_Chr5g0034231 Rosa chinensis HOM05D000397 ORTHO05D002023 3.8e-07 59.7 161 32.9
Sp7g19830 Schrenkiella parvula HOM05D000397 ORTHO05D002023 3.8e-07 59.7 143 35.7
Ah.09g237380 Amaranthus hybridus HOM05D000397 ORTHO05D002023 5.0e-07 59.3 130 32.3
Duzib213G0657 Durio zibethinus HOM05D000397 ORTHO05D002023 5.0e-07 59.3 230 28.7
MD11G1246500 Malus domestica HOM05D000397 ORTHO05D002023 5.0e-07 59.3 123 35.0
VMungo1080G0545 Vigna mungo HOM05D000397 ORTHO05D002023 5.0e-07 59.3 109 37.6
AT4G21700 Arabidopsis thaliana HOM05D000397 ORTHO05D002023 6.5e-07 58.9 140 33.6
DCAR_010209 Daucus carota HOM05D000397 ORTHO05D002023 6.5e-07 58.9 165 29.7
FAN16G3478 Fragaria x ananassa HOM05D000397 ORTHO05D002023 6.5e-07 58.9 149 30.9
Eucgr.F01120 Eucalyptus grandis HOM05D000397 ORTHO05D002023 8.4e-07 58.5 84 38.1
Thhalv10024323m.g Eutrema salsugineum HOM05D000397 ORTHO05D002023 8.4e-07 58.5 172 30.2
QL05p040325 Quercus lobata HOM05D000397 ORTHO05D002023 8.4e-07 58.5 141 31.9
AL5G23650 Arabidopsis lyrata HOM05D000397 ORTHO05D002023 1.4e-06 57.8 137 32.8
AL5G38510 Arabidopsis lyrata HOM05D000397 ORTHO05D002023 1.4e-06 57.8 137 32.8
COL.COLO4_27165 Corchorus olitorius HOM05D000397 ORTHO05D002023 1.4e-06 57.8 169 32.5
AL7G32260 Arabidopsis lyrata HOM05D000397 ORTHO05D002023 1.9e-06 57.4 166 31.3
BraA01t01242Z Brassica rapa HOM05D000397 ORTHO05D002023 2.5e-06 57.0 170 32.9
Haze_06458 Corylus avellana HOM05D000397 ORTHO05D002023 3.2e-06 56.6 141 32.6
Rhsim04G0021200 Rhododendron simsii HOM05D000397 ORTHO05D002023 3.2e-06 56.6 117 29.9
A01p12990 Brassica napus HOM05D000397 ORTHO05D002023 4.2e-06 56.2 170 32.4
CARHR228430 Cardamine hirsuta HOM05D000397 ORTHO05D002023 4.2e-06 56.2 143 32.9
C01p15680 Brassica napus HOM05D000397 ORTHO05D002023 5.5e-06 55.8 204 31.4
BolC1t01522H Brassica oleracea HOM05D000397 ORTHO05D002023 5.5e-06 55.8 204 31.4
EL10Ac8g20384 Beta vulgaris HOM05D000397 ORTHO05D002023 9.3e-06 55.1 130 31.5


User provided reference genes

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