Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr2.2590 Acer truncatum HOM05D008181 ORTHO05D010459 1.1e-193 679.9 372 100.0
Atru.chr7.854 Acer truncatum HOM05D008181 ORTHO05D010459 2.6e-97 359.8 178 95.5
Atru.chr6.965 Acer truncatum HOM05D000028 ORTHO05D001343 1.0e-45 188.3 238 63.9
Atru.chr4.282 Acer truncatum HOM05D008181 ORTHO05D010459 3.3e-44 183.3 171 52.0
Atru.chr5.1893 Acer truncatum HOM05D008181 ORTHO05D010459 9.7e-44 181.8 195 47.7
Atru.chr8.857 Acer truncatum HOM05D008181 ORTHO05D010459 2.0e-25 120.9 186 37.1
Thecc.04G148800 Theobroma cacao HOM05D008181 ORTHO05D010459 3.8e-16 90.1 148 37.2
Thecc.01G188500 Theobroma cacao HOM05D008181 ORTHO05D010459 5.0e-16 89.7 152 35.5
SGA_v2.0_scaffold954G53748 Striga asiatica HOM05D011572 ORTHO05D010459 6.5e-16 89.4 170 28.8
Atru.chr7.61 Acer truncatum HOM05D008181 ORTHO05D010459 1.5e-15 88.2 182 32.4
Thecc.04G032800 Theobroma cacao HOM05D008181 ORTHO05D010459 9.4e-15 85.5 148 34.5
Thecc.10G113200 Theobroma cacao HOM05D008181 ORTHO05D010459 8.0e-14 82.4 132 37.1
SGA_v2.0_scaffold365G50015 Striga asiatica HOM05D011572 ORTHO05D012893 1.8e-13 81.3 177 27.7
CANSAT35G1946 Cannabis sativa HOM05D009344 ORTHO05D001269 4.0e-13 80.1 185 29.2
Thecc.10G054600 Theobroma cacao HOM05D008181 ORTHO05D010459 8.8e-13 79.0 133 33.8
HanXRQChr04g0099531 Helianthus annuus HOM05D010915 ORTHO05D010404 2.0e-12 77.8 180 30.0
Thecc.03G161900 Theobroma cacao HOM05D008181 ORTHO05D010459 2.6e-12 77.4 157 33.1
CANSAT35G1833 Cannabis sativa HOM05D009344 ORTHO05D001269 3.3e-12 77.0 165 31.5
HanXRQChr04g0099501 Helianthus annuus HOM05D010915 ORTHO05D010404 3.3e-12 77.0 182 30.2
Thecc.07G175000 Theobroma cacao HOM05D008181 ORTHO05D010459 3.3e-12 77.0 166 33.1
MELO3C007522.2 Cucumis melo HOM05D007907 ORTHO05D009079 5.7e-12 76.3 172 29.7
CANSAT56G2211 Cannabis sativa HOM05D009344 ORTHO05D001269 2.2e-11 74.3 166 30.7
Atru.chr5.2512 Acer truncatum HOM05D000034 ORTHO05D000037 4.8e-11 73.2 75 48.0
CANSAT54G0280 Cannabis sativa HOM05D009344 ORTHO05D001269 8.2e-11 72.4 164 30.5
CANSAT92G0002 Cannabis sativa HOM05D009344 ORTHO05D001269 8.2e-11 72.4 161 30.4
HanXRQChr04g0099521 Helianthus annuus HOM05D010915 ORTHO05D010404 8.2e-11 72.4 180 27.8
HanXRQChr04g0099511 Helianthus annuus HOM05D010915 ORTHO05D010404 1.4e-10 71.6 181 27.1
CANSAT01G2042 Cannabis sativa HOM05D009344 ORTHO05D001269 2.4e-10 70.9 163 28.8
CANSAT64G1497 Cannabis sativa HOM05D009344 ORTHO05D001269 2.4e-10 70.9 161 30.4
Oeu021073.1 Olea europaea HOM05D006164 ORTHO05D001269 2.4e-10 70.9 159 30.2
THA.LOC104803192 Tarenaya hassleriana HOM05D003554 ORTHO05D005130 4.1e-10 70.1 175 26.9
THA.LOC104811336 Tarenaya hassleriana HOM05D003554 ORTHO05D005130 4.1e-10 70.1 140 30.0
THA.LOC104807807 Tarenaya hassleriana HOM05D003554 ORTHO05D005130 5.3e-10 69.7 175 26.9
CANSAT01G0062 Cannabis sativa HOM05D008058 ORTHO05D001269 9.1e-10 68.9 154 29.2
CANSAT78G1060 Cannabis sativa HOM05D009344 ORTHO05D001269 9.1e-10 68.9 161 28.0
THA.LOC104799670 Tarenaya hassleriana HOM05D003554 ORTHO05D005130 1.2e-09 68.6 140 30.0
Oeu037738.1 Olea europaea HOM05D002262 ORTHO05D000482 1.6e-09 68.2 174 28.7
SGA_v2.0_scaffold491G52433 Striga asiatica HOM05D008585 ORTHO05D000397 1.6e-09 68.2 176 26.1
THA.LOC104807874 Tarenaya hassleriana HOM05D003554 ORTHO05D005130 2.7e-09 67.4 140 29.3
Atru.chr9.1115 Acer truncatum HOM05D008181 ORTHO05D010459 4.5e-09 66.6 151 31.8
Lsat_1_v5_gn_4_99201 Lactuca sativa HOM05D009439 ORTHO05D010827 4.5e-09 66.6 174 27.0
Oeu029820.1 Olea europaea HOM05D008585 ORTHO05D000397 4.5e-09 66.6 159 28.3
Oeu041493.2 Olea europaea HOM05D008585 ORTHO05D000397 4.5e-09 66.6 159 28.3
CANSAT21G1491 Cannabis sativa HOM05D001081 ORTHO05D001269 5.9e-09 66.2 165 25.5
CANSAT54G1962 Cannabis sativa HOM05D009344 ORTHO05D001269 5.9e-09 66.2 164 29.3
Atru.chr11.709 Acer truncatum HOM05D008181 ORTHO05D010459 7.7e-09 65.9 169 26.6
SGA_v2.0_scaffold12G06039 Striga asiatica HOM05D008585 ORTHO05D000397 7.7e-09 65.9 175 26.3
THA.LOC104798704 Tarenaya hassleriana HOM05D003554 ORTHO05D005130 7.7e-09 65.9 140 29.3
Thecc.06G057400 Theobroma cacao HOM05D008181 ORTHO05D010459 7.7e-09 65.9 146 27.4
Oeu027636.1 Olea europaea HOM05D002749 ORTHO05D000708 1.0e-08 65.5 174 28.7
Oeu014738.1 Olea europaea HOM05D002749 ORTHO05D000708 1.7e-08 64.7 168 29.8
Oeu045265.1 Olea europaea HOM05D002749 ORTHO05D000708 2.2e-08 64.3 178 29.2
Thecc.02G036800 Theobroma cacao HOM05D008181 ORTHO05D010459 2.9e-08 63.9 119 33.6
Lsat_1_v5_gn_4_153261 Lactuca sativa HOM05D009439 ORTHO05D010404 3.8e-08 63.5 187 24.1
SGA_v2.0_scaffold3G01660 Striga asiatica HOM05D008585 ORTHO05D000397 5.0e-08 63.2 154 27.3
Lsat_1_v5_gn_6_59841 Lactuca sativa HOM05D009439 ORTHO05D010404 6.5e-08 62.8 187 24.1
Nitab4.5_0002279g0010 Nicotiana tabacum HOM05D005063 ORTHO05D000482 6.5e-08 62.8 190 26.3
Oeu048688.1 Olea europaea HOM05D002749 ORTHO05D000708 6.5e-08 62.8 171 29.8
SGA_v2.0_scaffold9G04779 Striga asiatica HOM05D008585 ORTHO05D000397 8.5e-08 62.4 175 25.7
THA.LOC109116563 Tarenaya hassleriana HOM05D003554 ORTHO05D005130 8.5e-08 62.4 142 28.9
THA.LOC104798881 Tarenaya hassleriana HOM05D003554 ORTHO05D005130 1.5e-07 61.6 126 30.2
SGA_v2.0_scaffold41G15715 Striga asiatica HOM05D008585 ORTHO05D000397 1.9e-07 61.2 156 23.7
Lsat_1_v5_gn_0_25881 Lactuca sativa HOM05D009439 ORTHO05D010404 2.5e-07 60.8 187 23.5
Lsat_1_v5_gn_1_106180 Lactuca sativa HOM05D009439 ORTHO05D010404 2.5e-07 60.8 187 23.5
Lsat_1_v5_gn_2_108261 Lactuca sativa HOM05D009439 ORTHO05D010404 2.5e-07 60.8 187 23.5
Lsat_1_v5_gn_3_109740 Lactuca sativa HOM05D009439 ORTHO05D010404 2.5e-07 60.8 187 23.5
Lsat_1_v5_gn_5_133480 Lactuca sativa HOM05D009439 ORTHO05D010404 2.5e-07 60.8 187 23.5
Lsat_1_v5_gn_5_151300 Lactuca sativa HOM05D009439 ORTHO05D010404 2.5e-07 60.8 187 23.5
Lsat_1_v5_gn_5_62540 Lactuca sativa HOM05D009439 ORTHO05D010404 2.5e-07 60.8 190 25.3
Lsat_1_v5_gn_7_108221 Lactuca sativa HOM05D009439 ORTHO05D010404 2.5e-07 60.8 187 23.5
Lsat_1_v5_gn_7_48561 Lactuca sativa HOM05D009439 ORTHO05D010404 2.5e-07 60.8 187 23.5
Lsat_1_v5_gn_9_102201 Lactuca sativa HOM05D009439 ORTHO05D010404 2.5e-07 60.8 187 23.5
Oeu031350.1 Olea europaea HOM05D002749 ORTHO05D000708 2.5e-07 60.8 179 27.4
PSO421G0071 Papaver somniferum HOM05D007816 ORTHO05D000397 2.5e-07 60.8 192 22.9
PSO063G4195 Papaver somniferum HOM05D007816 ORTHO05D000397 3.2e-07 60.5 192 22.9
SGA_v2.0_scaffold16G07582 Striga asiatica HOM05D008585 ORTHO05D000397 3.2e-07 60.5 175 25.1
TWI14G0228 Tripterygium wilfordii HOM05D007816 ORTHO05D000397 3.2e-07 60.5 196 28.1
TWI75G0282 Tripterygium wilfordii HOM05D007816 ORTHO05D000397 3.2e-07 60.5 196 28.1
CANSAT11G2391 Cannabis sativa HOM05D009344 ORTHO05D001269 4.2e-07 60.1 296 21.6
Oeu037089.1 Olea europaea HOM05D002262 ORTHO05D000708 4.2e-07 60.1 174 26.4
TWI59G0262 Tripterygium wilfordii HOM05D007816 ORTHO05D000397 4.2e-07 60.1 196 28.1
Atru.chr13.1945 Acer truncatum HOM05D008181 ORTHO05D000397 5.5e-07 59.7 154 27.3
Oeu038220.1 Olea europaea HOM05D002262 ORTHO05D000482 5.5e-07 59.7 183 28.4
Thecc.09G121600 Theobroma cacao HOM05D008181 ORTHO05D010459 7.2e-07 59.3 187 26.7
Oeu046189.1 Olea europaea HOM05D002749 ORTHO05D000708 9.4e-07 58.9 186 29.0
SGA_v2.0_scaffold63G21779 Striga asiatica HOM05D008585 ORTHO05D000397 9.4e-07 58.9 156 25.6
CANSAT35G0637 Cannabis sativa HOM05D009344 ORTHO05D001269 2.1e-06 57.8 127 31.5
CANSAT54G1637 Cannabis sativa HOM05D009344 ORTHO05D001269 2.1e-06 57.8 127 29.1
Nitab4.5_0000377g0060 Nicotiana tabacum HOM05D005063 ORTHO05D000482 2.1e-06 57.8 164 28.0
CANSAT80G2675 Cannabis sativa HOM05D002262 ORTHO05D000482 3.6e-06 57.0 167 25.1
Oeu045767.1 Olea europaea HOM05D006164 ORTHO05D001269 3.6e-06 57.0 168 25.6
SalBow8G4995 Salvia bowleyana HOM05D008082 ORTHO05D006517 3.6e-06 57.0 175 28.6
SGA_v2.0_scaffold162G37930 Striga asiatica HOM05D008585 ORTHO05D000397 3.6e-06 57.0 173 21.4
Oeu038998.1 Olea europaea HOM05D002749 ORTHO05D000708 6.1e-06 56.2 184 26.6
SGA_v2.0_scaffold164G38150 Striga asiatica HOM05D008585 ORTHO05D000397 6.1e-06 56.2 161 24.2
Thecc.07G043200 Theobroma cacao HOM05D008181 ORTHO05D010459 8.0e-06 55.8 162 25.9


User provided reference genes

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