Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr2.2541 Acer truncatum HOM05D001339 ORTHO05D002998 1.1e-37 159.5 83 100.0
Atru.chr2.2573 Acer truncatum HOM05D001339 ORTHO05D002998 1.2e-15 86.3 60 76.7
Atru.chr2.3728 Acer truncatum HOM05D001339 ORTHO05D002998 2.1e-15 85.5 55 83.6
Dinv28769 Davidia involucrata HOM05D001339 ORTHO05D003609 1.1e-11 73.2 56 66.1
Manes.18G121800 Manihot esculenta HOM05D001339 ORTHO05D002998 1.1e-11 73.2 55 69.1
Manes.02G210000 Manihot esculenta HOM05D001339 ORTHO05D002998 1.4e-11 72.8 55 69.1
Ciclev10003449m.g Citrus clementina HOM05D001339 ORTHO05D002998 9.1e-11 70.1 55 67.3
Medtr5g076080 Medicago truncatula HOM05D001339 ORTHO05D002998 5.9e-10 67.4 56 60.7
Thecc.01G000200 Theobroma cacao HOM05D001339 ORTHO05D002998 7.7e-10 67.0 52 65.4
Psat2g048800 Pisum sativum HOM05D001339 ORTHO05D002998 2.2e-09 65.5 55 60.0
TAR623G0286 Trochodendron aralioides HOM05D001339 ORTHO05D002998 2.9e-09 65.1 56 60.7
MBI18_g38874_MAGBIO Magnolia biondii HOM05D001339 ORTHO05D002998 3.8e-09 64.7 55 58.2
TPR.G15401 Trifolium pratense HOM05D001339 ORTHO05D002998 3.8e-09 64.7 55 60.0
Sed0005884 Sechium edule HOM05D001339 ORTHO05D002998 5.0e-09 64.3 55 65.5
Sed0008479 Sechium edule HOM05D001339 ORTHO05D002998 5.0e-09 64.3 56 64.3
vmacro02854 Vaccinium macrocarpon HOM05D001339 ORTHO05D002998 5.0e-09 64.3 60 53.3
Lalb_Chr20g0117221 Lupinus albus HOM05D001339 ORTHO05D002998 6.5e-09 63.9 57 57.9
DCAR_018596 Daucus carota HOM05D001339 ORTHO05D002998 1.1e-08 63.2 55 60.0
Duzib213G1068 Durio zibethinus HOM05D001339 ORTHO05D002998 1.1e-08 63.2 55 58.2
Potri.013G161500 Populus trichocarpa HOM05D001339 ORTHO05D002998 1.1e-08 63.2 55 58.2
QL01p023409 Quercus lobata HOM05D001339 ORTHO05D002998 1.1e-08 63.2 55 58.2
Sabra13G0129100 Salix brachista HOM05D001339 ORTHO05D002998 1.1e-08 63.2 55 58.2
CiPaw.13G059200 Carya illinoinensis HOM05D001339 ORTHO05D002998 1.5e-08 62.8 56 57.1
Lalb_Chr18g0053981 Lupinus albus HOM05D001339 ORTHO05D002998 1.5e-08 62.8 57 56.1
Sc10g0009450 Simmondsia chinensis HOM05D001339 ORTHO05D002998 1.9e-08 62.4 53 62.3
MELO3C019601.2 Cucumis melo HOM05D001339 ORTHO05D002998 2.5e-08 62.0 56 64.3
CsaV3_6G013290 Cucumis sativus L. HOM05D001339 ORTHO05D002998 2.5e-08 62.0 56 64.3
FAN21G3752 Fragaria x ananassa HOM05D001339 ORTHO05D002998 2.5e-08 62.0 79 45.6
Gohir.D13G128900 Gossypium hirsutum HOM05D001339 ORTHO05D002998 2.5e-08 62.0 55 65.5
Gorai.013G145100 Gossypium raimondii HOM05D001339 ORTHO05D002998 2.5e-08 62.0 55 65.5
Lalb_Chr15g0085501 Lupinus albus HOM05D001339 ORTHO05D002998 2.5e-08 62.0 57 56.1
Phvul.008G243300 Phaseolus vulgaris HOM05D001339 ORTHO05D002998 2.5e-08 62.0 56 55.4
VMungo0647G2108 Vigna mungo HOM05D001339 ORTHO05D002998 2.5e-08 62.0 55 56.4
Nn1g09382 Nelumbo nucifera HOM05D001339 ORTHO05D002998 3.2e-08 61.6 62 51.6
CANSAT54G1115 Cannabis sativa HOM05D001339 ORTHO05D002998 4.2e-08 61.2 55 54.5
LjContig00141g0017332 Lotus japonicus HOM05D001339 ORTHO05D002998 4.2e-08 61.2 55 54.5
Lalb_Chr10g0103911 Lupinus albus HOM05D001339 ORTHO05D002998 4.2e-08 61.2 55 56.4
Nn7g37404 Nelumbo nucifera HOM05D001339 ORTHO05D002998 4.2e-08 61.2 56 55.4
Potri.017G000100 Populus trichocarpa HOM05D001339 ORTHO05D002998 4.2e-08 61.2 55 56.4
Cpa.g.sc70.24 Carica papaya HOM05D001339 ORTHO05D002998 5.5e-08 60.8 55 52.7
GSVIVG01024516001 Vitis vinifera HOM05D001339 ORTHO05D002998 5.5e-08 60.8 56 57.1
Cfa018684 Carpinus fangiana HOM05D001339 ORTHO05D002998 7.2e-08 60.5 55 56.4
CiPaw.14G047200 Carya illinoinensis HOM05D001339 ORTHO05D002998 7.2e-08 60.5 55 58.2
Gohir.A13G125200 Gossypium hirsutum HOM05D001339 ORTHO05D002998 1.2e-07 59.7 55 61.8
Ca_05734_v3 Cicer arietinum L. HOM05D001339 ORTHO05D002998 1.6e-07 59.3 54 55.6
CSS0023896 Camellia sinensis var. sinensis HOM05D001339 ORTHO05D002998 2.1e-07 58.9 56 51.8
Cc01_g15650 Coffea canephora HOM05D001339 ORTHO05D002998 2.1e-07 58.9 56 51.8
ECA247G0838 Erigeron canadensis HOM05D001339 ORTHO05D002998 2.1e-07 58.9 55 54.5
HanXRQChr08g0231041 Helianthus annuus HOM05D001339 ORTHO05D002998 2.1e-07 58.9 57 50.9
SalBow2G0190 Salvia bowleyana HOM05D001339 ORTHO05D002998 2.1e-07 58.9 55 56.4
THA.LOC104814988 Tarenaya hassleriana HOM05D001339 ORTHO05D002998 2.1e-07 58.9 55 56.4
COL.COLO4_32264 Corchorus olitorius HOM05D003670 ORTHO05D004767 2.7e-07 58.5 58 56.9
arahy.Tifrunner.gnm1.ann1.5N4VNG Arachis hypogaea HOM05D001339 ORTHO05D002998 3.6e-07 58.2 56 51.8
Glyma.14G207600 Glycine max HOM05D001339 ORTHO05D002998 3.6e-07 58.2 55 52.7
Hma1.2p1_0161F.1_g071920 Hydrangea macrophylla HOM05D001339 ORTHO05D002998 3.6e-07 58.2 55 50.9
AL6G21430 Arabidopsis lyrata HOM05D001339 ORTHO05D002998 6.1e-07 57.4 55 54.5
arahy.Tifrunner.gnm1.ann1.3I28FP Arachis hypogaea HOM05D001339 ORTHO05D002998 6.1e-07 57.4 56 51.8
Carub.0006s0936 Capsella rubella HOM05D001339 ORTHO05D002998 6.1e-07 57.4 55 50.9
CARHR202420 Cardamine hirsuta HOM05D001339 ORTHO05D002998 6.1e-07 57.4 55 52.7
Medtr5g076010 Medicago truncatula HOM05D005775 ORTHO05D000023 6.1e-07 57.4 55 54.5
Aa31LG3G16250 Aethionema arabicum HOM05D001339 ORTHO05D002998 8.0e-07 57.0 69 46.4
arahy.Tifrunner.gnm1.ann1.TK8AAC Arachis hypogaea HOM05D001339 ORTHO05D002998 8.0e-07 57.0 55 54.5
FAN25G0793 Fragaria x ananassa HOM05D001339 ORTHO05D002998 8.0e-07 57.0 55 52.7
RcHm_v2.0_Chr5g0074091 Rosa chinensis HOM05D001339 ORTHO05D002998 8.0e-07 57.0 55 52.7
A10p26790 Brassica napus HOM05D000238 ORTHO05D001043 1.0e-06 56.6 56 46.4
BraA10t44733Z Brassica rapa HOM05D000238 ORTHO05D002998 1.0e-06 56.6 56 46.4
Duzib192G0625 Durio zibethinus HOM05D001339 ORTHO05D002998 1.0e-06 56.6 44 63.6
FvH4_3g41290 Fragaria vesca HOM05D001339 ORTHO05D002998 1.0e-06 56.6 55 52.7
FAN11G1411 Fragaria x ananassa HOM05D001339 ORTHO05D002998 1.0e-06 56.6 55 52.7
FAN16G0641 Fragaria x ananassa HOM05D001339 ORTHO05D002998 1.0e-06 56.6 55 52.7
TWI31G1369 Tripterygium wilfordii HOM05D001339 ORTHO05D002998 1.0e-06 56.6 55 54.5
Zm00001eb056450 Zea mays HOM05D001339 ORTHO05D002998 1.4e-06 56.2 54 55.6
Thhalv10014695m.g Eutrema salsugineum HOM05D001339 ORTHO05D002998 1.8e-06 55.8 55 50.9
Glyma.02G238700 Glycine max HOM05D001339 ORTHO05D002998 1.8e-06 55.8 55 50.9
Hma1.2p1_1631F.1_g294600 Hydrangea macrophylla HOM05D001339 ORTHO05D002998 1.8e-06 55.8 53 49.1
Prupe.6G037200 Prunus persica HOM05D001339 ORTHO05D002998 2.3e-06 55.5 55 50.9
Peaxi162Scf00293g00510 Petunia axillaris HOM05D001339 ORTHO05D002998 3.0e-06 55.1 55 49.1
BcaC04g19279 Brassica carinata HOM05D001339 ORTHO05D002998 4.0e-06 54.7 56 46.4
C09p65930 Brassica napus HOM05D000238 ORTHO05D002998 4.0e-06 54.7 56 46.4
Nitab4.5_0000539g0040 Nicotiana tabacum HOM05D001339 ORTHO05D002998 4.0e-06 54.7 55 47.3
PGR102G0880 Punica granatum HOM05D001339 ORTHO05D002998 4.0e-06 54.7 55 56.4
AT5G10860 Arabidopsis thaliana HOM05D001339 ORTHO05D002998 6.8e-06 53.9 55 50.9
Nitab4.5_0004383g0020 Nicotiana tabacum HOM05D001339 ORTHO05D002998 8.8e-06 53.5 55 47.3


User provided reference genes

Program Settings