Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr2.2525 Acer truncatum HOM05D003506 ORTHO05D004063 0.0e+00 1137.1 734 100.0
Atru.chr2.2548 Acer truncatum HOM05D003506 ORTHO05D004063 1.0e-254 883.6 737 84.8
Atru.chr2.2780 Acer truncatum HOM05D003506 ORTHO05D004063 2.2e-100 370.9 451 56.1
Atru.chr2.433 Acer truncatum HOM05D003506 ORTHO05D004063 5.5e-99 366.3 545 53.2
Ciclev10027583m.g Citrus clementina HOM05D003506 ORTHO05D004063 9.0e-78 295.8 545 38.7
Atru.chr2.2521 Acer truncatum HOM05D003506 ORTHO05D004063 9.7e-72 275.8 164 84.8
Potri.003G101000 Populus trichocarpa HOM05D003506 ORTHO05D004063 9.1e-70 269.2 755 31.7
QL12p009886 Quercus lobata HOM05D003506 ORTHO05D004063 1.4e-67 261.9 741 30.9
QL12p010549 Quercus lobata HOM05D003506 ORTHO05D004063 1.2e-66 258.8 741 30.8
Ciclev10033967m.g Citrus clementina HOM05D003506 ORTHO05D004063 6.7e-65 253.1 315 50.5
Prupe.7G078000 Prunus persica HOM05D003506 ORTHO05D004063 5.7e-64 250.0 737 31.5
TWI60G1006 Tripterygium wilfordii HOM05D003506 ORTHO05D004063 5.3e-62 243.4 552 35.0
FAN14G0755 Fragaria x ananassa HOM05D003506 ORTHO05D004063 1.3e-60 238.8 730 30.8
FvH4_6g22120 Fragaria vesca HOM05D003506 ORTHO05D004063 8.5e-60 236.1 730 30.7
Gohir.D12G206300 Gossypium hirsutum HOM05D003506 ORTHO05D004063 1.1e-59 235.7 723 29.2
Gorai.008G221500 Gossypium raimondii HOM05D003506 ORTHO05D004063 2.5e-59 234.6 744 28.9
Thecc.03G315800 Theobroma cacao HOM05D003506 ORTHO05D004063 4.2e-59 233.8 749 29.4
Gohir.A12G203900 Gossypium hirsutum HOM05D003506 ORTHO05D004063 9.4e-59 232.6 725 29.2
Eucgr.E00383 Eucalyptus grandis HOM05D003506 ORTHO05D004063 4.7e-58 230.3 525 35.8
RcHm_v2.0_Chr3g0479451 Rosa chinensis HOM05D003506 ORTHO05D004063 1.0e-57 229.2 727 29.3
Haze_19428 Corylus avellana HOM05D003506 ORTHO05D004063 3.3e-56 224.2 752 30.1
Cfa001535 Carpinus fangiana HOM05D003506 ORTHO05D004063 4.4e-56 223.8 549 33.3
COL.COLO4_37090 Corchorus olitorius HOM05D003506 ORTHO05D004063 4.4e-56 223.8 338 41.4
Cfa001536 Carpinus fangiana HOM05D003506 ORTHO05D004063 2.4e-54 218.0 555 32.8
Lj1A1215T59 Lonicera japonica HOM05D003506 ORTHO05D004063 2.0e-53 214.9 735 28.8
Haze_19427 Corylus avellana HOM05D003506 ORTHO05D004063 3.5e-53 214.2 561 34.0
Thecc.03G312300 Theobroma cacao HOM05D003506 ORTHO05D004063 7.7e-53 213.0 542 30.3
ClCG00G003230 Citrullus lanatus HOM05D003506 ORTHO05D004063 3.8e-52 210.7 543 30.9
ClCG01G004380 Citrullus lanatus HOM05D003506 ORTHO05D004063 3.8e-52 210.7 543 30.9
CSS0044487 Camellia sinensis var. sinensis HOM05D003506 ORTHO05D004063 1.5e-51 208.8 740 28.5
CSS0002170 Camellia sinensis var. sinensis HOM05D003506 ORTHO05D004063 8.0e-50 203.0 743 28.8
COL.COLO4_15511 Corchorus olitorius HOM05D003506 ORTHO05D004063 3.0e-49 201.1 716 28.4
MD14G1055300 Malus domestica HOM05D003506 ORTHO05D004063 7.5e-48 196.4 503 33.8
QL12p010090 Quercus lobata HOM05D003506 ORTHO05D004063 7.5e-48 196.4 585 30.3
COL.COLO4_16868 Corchorus olitorius HOM05D003506 ORTHO05D004063 1.7e-47 195.3 504 32.3
Carub.0008s0262 Capsella rubella HOM05D003506 ORTHO05D004063 4.8e-47 193.7 531 27.9
CiPaw.12G027400 Carya illinoinensis HOM05D003506 ORTHO05D004063 6.3e-47 193.4 751 28.5
CsaV3_5G004570 Cucumis sativus L. HOM05D003506 ORTHO05D004063 1.4e-46 192.2 553 29.3
THA.LOC104806185 Tarenaya hassleriana HOM05D003506 ORTHO05D004063 1.2e-45 189.1 522 31.4
CiPaw.11G083500 Carya illinoinensis HOM05D003506 ORTHO05D004063 2.0e-45 188.3 547 32.0
Dinv40460 Davidia involucrata HOM05D003506 ORTHO05D004063 5.9e-45 186.8 554 29.8
MELO3C005504.2 Cucumis melo HOM05D003506 ORTHO05D004063 7.7e-45 186.4 552 28.6
BcaC06g34429 Brassica carinata HOM05D003506 ORTHO05D004063 2.2e-44 184.9 534 27.2
C07p28600 Brassica napus HOM05D003506 ORTHO05D004063 2.2e-44 184.9 534 27.2
BolC7t43398H Brassica oleracea HOM05D003506 ORTHO05D004063 2.2e-44 184.9 534 27.2
CARHR176610 Cardamine hirsuta HOM05D003506 ORTHO05D004063 2.2e-44 184.9 576 27.4
BcaC03g16771 Brassica carinata HOM05D003506 ORTHO05D004063 5.0e-44 183.7 566 27.7
BolC2t10698H Brassica oleracea HOM05D003506 ORTHO05D004063 5.0e-44 183.7 566 27.7
Actinidia26982 Actinidia chinensis HOM05D003506 ORTHO05D004063 6.5e-44 183.3 737 27.5
BcaB07g30440 Brassica carinata HOM05D003506 ORTHO05D004063 8.5e-44 183.0 352 33.8
Thhalv10024259m.g Eutrema salsugineum HOM05D003506 ORTHO05D004063 8.5e-44 183.0 545 27.7
C02p46460 Brassica napus HOM05D003506 ORTHO05D004063 1.1e-43 182.6 566 27.6
Duzib205G1851 Durio zibethinus HOM05D003506 ORTHO05D004063 1.1e-43 182.6 294 39.1
Actinidia20129 Actinidia chinensis HOM05D003506 ORTHO05D004063 1.9e-43 181.8 741 27.5
A02p29260 Brassica napus HOM05D003506 ORTHO05D004063 2.5e-43 181.4 565 27.6
BraA02t07955Z Brassica rapa HOM05D003506 ORTHO05D004063 2.5e-43 181.4 565 27.6
Carub.0007s2209 Capsella rubella HOM05D003506 ORTHO05D004063 2.5e-43 181.4 535 27.7
PGR044G0363 Punica granatum HOM05D003506 ORTHO05D004063 2.5e-43 181.4 760 27.2
Carub.0008s0251 Capsella rubella HOM05D003506 ORTHO05D004063 3.2e-43 181.0 562 28.8
THA.LOC109116396 Tarenaya hassleriana HOM05D003506 ORTHO05D004063 7.2e-43 179.9 547 29.3
BcaC09g51442 Brassica carinata HOM05D003506 ORTHO05D004063 1.6e-42 178.7 568 27.6
BolC1t01282H Brassica oleracea HOM05D003506 ORTHO05D004063 1.6e-42 178.7 568 27.6
C01p13080 Brassica napus HOM05D003506 ORTHO05D004063 2.1e-42 178.3 568 27.6
PGR042G2755 Punica granatum HOM05D003506 ORTHO05D004063 2.1e-42 178.3 764 27.1
CANSAT56G2852 Cannabis sativa HOM05D003506 ORTHO05D004063 3.6e-42 177.6 248 42.7
Aa31LG9G7510 Aethionema arabicum HOM05D003506 ORTHO05D004063 8.0e-42 176.4 539 27.6
AT5G45510 Arabidopsis thaliana HOM05D003506 ORTHO05D004063 1.0e-41 176.0 550 30.4
Sed0023391 Sechium edule HOM05D003506 ORTHO05D004063 1.4e-41 175.6 464 30.8
CSS0017703 Camellia sinensis var. sinensis HOM05D003506 ORTHO05D004063 2.3e-41 174.9 518 31.7
Eucgr.E03821 Eucalyptus grandis HOM05D003506 ORTHO05D004063 3.0e-41 174.5 337 39.5
Actinidia11820 Actinidia chinensis HOM05D003506 ORTHO05D006958 4.0e-41 174.1 742 26.7
Sp7g17770 Schrenkiella parvula HOM05D003506 ORTHO05D004063 5.2e-41 173.7 548 27.7
Gohir.A08G152600 Gossypium hirsutum HOM05D003506 ORTHO05D004063 1.2e-40 172.6 547 27.6
AT4G19050 Arabidopsis thaliana HOM05D003506 ORTHO05D004063 1.5e-40 172.2 774 25.5
Thhalv10000742m.g Eutrema salsugineum HOM05D003506 ORTHO05D004063 2.6e-40 171.4 542 28.2
AL8G13340 Arabidopsis lyrata HOM05D003506 ORTHO05D004063 5.7e-40 170.2 780 24.4
Gorai.004G181200 Gossypium raimondii HOM05D003506 ORTHO05D004063 5.7e-40 170.2 742 25.3
Lj2C372T7 Lonicera japonica HOM05D003506 ORTHO05D004063 7.5e-40 169.9 509 27.9
QL12p009920 Quercus lobata HOM05D003506 ORTHO05D004063 7.5e-40 169.9 522 32.4
Cc08_g04830 Coffea canephora HOM05D003506 ORTHO05D004063 3.7e-39 167.5 543 26.2
CiPaw.12G027500 Carya illinoinensis HOM05D003506 ORTHO05D004063 6.3e-39 166.8 344 36.3
Gohir.D08G173500 Gossypium hirsutum HOM05D003506 ORTHO05D004063 6.3e-39 166.8 742 24.9
AL7G35050 Arabidopsis lyrata HOM05D003506 ORTHO05D004063 8.3e-39 166.4 773 25.0
CARHR176510 Cardamine hirsuta HOM05D003506 ORTHO05D004063 1.1e-38 166.0 310 33.9
AL8G13190 Arabidopsis lyrata HOM05D003506 ORTHO05D004063 1.4e-38 165.6 620 28.4
Eucgr.D00770 Eucalyptus grandis HOM05D003506 ORTHO05D004063 1.4e-38 165.6 509 32.6
Cc05_g09100 Coffea canephora HOM05D003506 ORTHO05D004063 5.4e-38 163.7 516 30.6
BcaNung04016 Brassica carinata HOM05D003506 ORTHO05D004063 7.0e-38 163.3 781 25.4
COL.COLO4_16912 Corchorus olitorius HOM05D003506 ORTHO05D004063 7.0e-38 163.3 305 36.1
Cc08_g04930 Coffea canephora HOM05D003506 ORTHO05D004063 1.2e-37 162.5 543 25.8
Lsat_1_v5_gn_1_124100 Lactuca sativa HOM05D003506 ORTHO05D004063 1.6e-37 162.2 345 35.4
Atru.chr2.2522 Acer truncatum HOM05D003506 ORTHO05D004063 2.7e-37 161.4 92 95.7
BcaNung04011 Brassica carinata HOM05D003506 ORTHO05D004063 2.7e-37 161.4 536 26.5
DCAR_013527 Daucus carota HOM05D003506 ORTHO05D004063 2.7e-37 161.4 752 24.9
Atru.chr2.2523 Acer truncatum HOM05D003506 ORTHO05D004063 2.3e-36 158.3 89 94.4
Eucgr.E03688 Eucalyptus grandis HOM05D003506 ORTHO05D004063 2.3e-36 158.3 308 37.3
CiPaw.12G027300 Carya illinoinensis HOM05D003506 ORTHO05D004063 6.6e-36 156.8 558 29.0
A01p11060 Brassica napus HOM05D003506 ORTHO05D004063 1.5e-35 155.6 536 26.5
AL7G35000 Arabidopsis lyrata HOM05D000432 ORTHO05D004063 1.9e-35 155.2 531 27.5
CANSAT21G2366 Cannabis sativa HOM05D003506 ORTHO05D004063 1.9e-35 155.2 565 26.2
PGR042G2042 Punica granatum HOM05D003506 ORTHO05D004063 2.5e-35 154.8 540 29.6
Rhsim03G0013700 Rhododendron simsii HOM05D003506 ORTHO05D004063 2.5e-35 154.8 761 25.1
Cfa001537 Carpinus fangiana HOM05D003506 ORTHO05D004063 4.3e-35 154.1 379 34.3
QL12p010204 Quercus lobata HOM05D003506 ORTHO05D004063 7.3e-35 153.3 456 30.9
Rhsim03G0013200 Rhododendron simsii HOM05D003506 ORTHO05D004063 1.6e-34 152.1 756 25.5
BraA01t01053Z Brassica rapa HOM05D003506 ORTHO05D004063 2.1e-34 151.8 536 26.3
THA.LOC104798470 Tarenaya hassleriana HOM05D002287 ORTHO05D004063 2.1e-34 151.8 534 28.8
Rhsim03G0013500 Rhododendron simsii HOM05D003506 ORTHO05D004063 5.2e-33 147.1 546 26.9
Cpa.g.sc27.152 Carica papaya HOM05D003506 ORTHO05D004063 2.0e-32 145.2 745 24.6
CARHR225950 Cardamine hirsuta HOM05D003506 ORTHO05D004063 4.4e-32 144.1 593 25.0
RhsimUnG0207500 Rhododendron simsii HOM05D003506 ORTHO05D004063 9.8e-32 142.9 763 25.7
Cpa.g.sc27.142 Carica papaya HOM05D003506 ORTHO05D004063 2.2e-31 141.7 510 29.0
CAN.G641.75 Capsicum annuum HOM05D003506 ORTHO05D004063 3.7e-31 141.0 438 27.6
Aa31LG6G1760 Aethionema arabicum HOM05D003506 ORTHO05D004063 8.3e-31 139.8 531 24.7
Rhsim03G0012900 Rhododendron simsii HOM05D003506 ORTHO05D004063 3.2e-30 137.9 782 24.2
Cc00_g30260 Coffea canephora HOM05D003506 ORTHO05D004063 4.1e-30 137.5 747 24.8
Thhalv10024294m.g Eutrema salsugineum HOM05D003506 ORTHO05D004063 1.6e-29 135.6 533 27.4
Cpa.g.sc27.145 Carica papaya HOM05D003506 ORTHO05D004063 6.6e-28 130.2 533 28.0
ECA248G2101 Erigeron canadensis HOM05D003506 ORTHO05D004063 1.6e-26 125.6 567 27.9
DCAR_009112 Daucus carota HOM05D003506 ORTHO05D004063 2.1e-26 125.2 748 23.8
Cpa.g.sc27.148 Carica papaya HOM05D003506 ORTHO05D004063 1.0e-25 122.9 454 26.7
Nn7g37688 Nelumbo nucifera HOM05D003506 ORTHO05D004063 2.9e-23 114.8 298 31.5
Atru.chr2.2779 Acer truncatum HOM05D003506 ORTHO05D004063 1.6e-21 109.0 89 60.7
HanXRQChr01g0003761 Helianthus annuus HOM05D003506 ORTHO05D004063 2.0e-21 108.6 528 27.5
Cpa.g.sc27.147 Carica papaya HOM05D003506 ORTHO05D004063 1.9e-19 102.1 458 27.3
SGA_v2.0_scaffold69G23083 Striga asiatica HOM05D003506 ORTHO05D004063 3.3e-19 101.3 731 23.7
Rhsim03G0054300 Rhododendron simsii HOM05D003506 ORTHO05D004063 9.5e-19 99.8 228 34.2
CAN.G641.65 Capsicum annuum HOM05D003506 ORTHO05D004063 1.6e-18 99.0 179 34.6
Cc02_g12230 Coffea canephora HOM05D003506 ORTHO05D004063 1.6e-18 99.0 393 28.2
Nn1g03848 Nelumbo nucifera HOM05D003506 ORTHO05D004063 1.4e-17 95.9 325 28.3
Cpa.g.sc27.154 Carica papaya HOM05D003506 ORTHO05D004063 5.2e-17 94.0 226 31.4
Cc00_g10090 Coffea canephora HOM05D003506 ORTHO05D004063 3.7e-15 87.8 525 24.2
Atru.chr2.1044 Acer truncatum HOM05D003506 ORTHO05D004063 6.4e-15 87.0 91 56.0
Atru.chr2.1020 Acer truncatum HOM05D003506 ORTHO05D004063 8.3e-15 86.7 91 56.0
Atru.chr2.1027 Acer truncatum HOM05D003506 ORTHO05D004063 8.3e-15 86.7 91 56.0
Aqoxy1G02153 Aquilegia oxysepala HOM05D003506 ORTHO05D004063 3.2e-14 84.7 460 25.4
Eucgr.G01441 Eucalyptus grandis HOM05D003506 ORTHO05D004063 5.4e-14 84.0 272 28.3
Cpa.g.sc27.153 Carica papaya HOM05D003506 ORTHO05D004063 6.0e-13 80.5 456 23.9
EL10Ac4g07650 Beta vulgaris HOM05D003506 ORTHO05D004063 3.0e-12 78.2 249 30.5
Cc10_g11570 Coffea canephora HOM05D003506 ORTHO05D004063 1.1e-11 76.3 90 43.3
Aqoxy1G04209 Aquilegia oxysepala HOM05D003506 ORTHO05D004063 2.5e-11 75.1 460 23.3
Cc00_g21830 Coffea canephora HOM05D003506 ORTHO05D004063 4.3e-11 74.3 90 43.3
BcaC06g31546 Brassica carinata HOM05D003506 ORTHO05D004063 1.2e-10 72.8 340 23.8
Hma1.2p1_2475F.1_g322790 Hydrangea macrophylla HOM05D003506 ORTHO05D004063 1.6e-10 72.4 532 24.1
BcaC01g01510 Brassica carinata HOM05D000101 ORTHO05D000089 8.9e-09 66.6 515 23.5
Ah.06g181800 Amaranthus hybridus HOM05D003506 ORTHO05D004063 2.0e-08 65.5 334 24.9
Aqoxy4G00441 Aquilegia oxysepala HOM05D003506 ORTHO05D004063 3.4e-08 64.7 223 29.1
Aqoxy1G04134 Aquilegia oxysepala HOM05D003506 ORTHO05D004063 1.7e-07 62.4 259 25.9
Aqoxy4G00435 Aquilegia oxysepala HOM05D003506 ORTHO05D004063 2.9e-07 61.6 85 37.6
Cc08_g04780 Coffea canephora HOM05D003506 ORTHO05D004063 2.9e-07 61.6 98 38.8
Gohir.D01G058200 Gossypium hirsutum HOM05D000101 ORTHO05D000089 2.9e-07 61.6 346 26.6
CAN.G641.64 Capsicum annuum HOM05D003506 ORTHO05D004063 3.8e-07 61.2 90 41.1
Atru.chr2.1012 Acer truncatum HOM05D003506 ORTHO05D004063 8.4e-07 60.1 84 45.2
Aqoxy1G04135 Aquilegia oxysepala HOM05D003506 ORTHO05D004063 8.4e-07 60.1 296 24.3
Aqoxy4G00428 Aquilegia oxysepala HOM05D003506 ORTHO05D004063 8.4e-07 60.1 219 26.5
BolC1t02276H Brassica oleracea HOM05D000092 ORTHO05D000089 2.4e-06 58.5 91 38.5
BraA01t01790Z Brassica rapa HOM05D000101 ORTHO05D000089 2.4e-06 58.5 91 37.4
Thecc.07G078300 Theobroma cacao HOM05D000101 ORTHO05D000089 3.2e-06 58.2 256 25.8
Duzib268G1765 Durio zibethinus HOM05D000101 ORTHO05D000089 5.4e-06 57.4 265 22.6
MBI11_g25856_MAGBIO Magnolia biondii HOM05D001013 ORTHO05D001703 5.4e-06 57.4 273 22.7
BcaC09g50597 Brassica carinata HOM05D000101 ORTHO05D000089 7.1e-06 57.0 91 37.4
Duzib114G0705 Durio zibethinus HOM05D000101 ORTHO05D000089 7.1e-06 57.0 214 27.1
A01p18420 Brassica napus HOM05D000101 ORTHO05D000089 9.2e-06 56.6 107 36.4


User provided reference genes

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