Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr2.2479 Acer truncatum HOM05D005612 ORTHO05D007014 3.2e-234 814.7 403 100.0
Ciclev10010228m.g Citrus clementina HOM05D005612 ORTHO05D007014 3.0e-192 675.2 398 82.9
GSVIVG01027677001 Vitis vinifera HOM05D005612 ORTHO05D007014 4.2e-178 628.2 389 77.9
Prupe.6G155400 Prunus persica HOM05D005612 ORTHO05D007014 2.8e-174 615.5 390 78.5
QL08p052678 Quercus lobata HOM05D005612 ORTHO05D007014 1.4e-173 613.2 390 77.7
TWI14G1300 Tripterygium wilfordii HOM05D005612 ORTHO05D007014 2.0e-172 609.4 396 74.2
TAR375G1134 Trochodendron aralioides HOM05D005612 ORTHO05D007014 3.8e-171 605.1 391 76.0
Gorai.004G162600 Gossypium raimondii HOM05D005612 ORTHO05D007014 6.5e-171 604.4 407 73.0
Potri.014G068500 Populus trichocarpa HOM05D005612 ORTHO05D007014 3.0e-168 595.5 397 75.6
Gohir.A08G135500 Gossypium hirsutum HOM05D005612 ORTHO05D007014 4.0e-168 595.1 407 71.7
Nn4g26368 Nelumbo nucifera HOM05D005612 ORTHO05D007014 8.8e-168 594.0 391 74.4
vmacro13411 Vaccinium macrocarpon HOM05D005612 ORTHO05D007014 2.0e-167 592.8 390 75.4
Duzib138G1608 Durio zibethinus HOM05D005612 ORTHO05D007014 4.4e-167 591.7 407 72.7
CSS0047351 Camellia sinensis var. sinensis HOM05D005612 ORTHO05D007014 8.3e-166 587.4 390 73.6
Thecc.01G378200 Theobroma cacao HOM05D005612 ORTHO05D007014 8.3e-166 587.4 407 72.7
Dinv43696 Davidia involucrata HOM05D005612 ORTHO05D007014 1.8e-165 586.3 390 74.6
FAN28G0581 Fragaria x ananassa HOM05D005612 ORTHO05D007014 2.4e-165 585.9 391 74.9
RcHm_v2.0_Chr3g0497141 Rosa chinensis HOM05D005612 ORTHO05D007014 5.4e-165 584.7 391 75.7
Manes.01G266600 Manihot esculenta HOM05D005612 ORTHO05D007014 9.1e-165 583.9 389 72.8
CANSAT01G1400 Cannabis sativa HOM05D005612 ORTHO05D007014 2.0e-164 582.8 390 75.1
FAN28G2973 Fragaria x ananassa HOM05D005612 ORTHO05D007014 1.7e-163 579.7 391 74.2
FvH4_1g28100 Fragaria vesca HOM05D005612 ORTHO05D007014 2.9e-163 578.9 391 74.2
Aqoxy1G04104 Aquilegia oxysepala HOM05D005612 ORTHO05D007014 3.8e-163 578.6 391 71.6
CiPaw.01G263000 Carya illinoinensis HOM05D005612 ORTHO05D007014 3.8e-163 578.6 389 74.6
Aqoxy3G02061 Aquilegia oxysepala HOM05D005612 ORTHO05D007014 1.1e-162 577.0 391 71.9
Actinidia12252 Actinidia chinensis HOM05D005612 ORTHO05D007014 1.9e-162 576.2 399 70.7
FAN23G2738 Fragaria x ananassa HOM05D005612 ORTHO05D007014 1.9e-162 576.2 391 73.9
Eucgr.E01443 Eucalyptus grandis HOM05D005612 ORTHO05D007014 2.8e-161 572.4 389 72.0
FAN26G0204 Fragaria x ananassa HOM05D005612 ORTHO05D007014 4.7e-161 571.6 413 70.2
Hma1.2p1_2025F.1_g311480 Hydrangea macrophylla HOM05D005612 ORTHO05D007014 1.4e-160 570.1 390 72.1
Cpa.g.sc18.108 Carica papaya HOM05D005612 ORTHO05D007014 1.8e-160 569.7 386 73.8
COL.COLO4_12531 Corchorus olitorius HOM05D005612 ORTHO05D007014 1.8e-160 569.7 373 74.8
Manes.05G046700 Manihot esculenta HOM05D005612 ORTHO05D007014 1.2e-159 567.0 390 72.8
Lj3g0004128 Lotus japonicus HOM05D005612 ORTHO05D007014 2.0e-159 566.2 389 73.3
Sed0014004 Sechium edule HOM05D005612 ORTHO05D007014 2.0e-159 566.2 389 71.0
CsaV3_3G009760 Cucumis sativus L. HOM05D005612 ORTHO05D007014 1.7e-158 563.1 389 71.2
Gohir.D08G156300 Gossypium hirsutum HOM05D005612 ORTHO05D007014 2.2e-158 562.8 403 70.5
MD00G1094900 Malus domestica HOM05D005612 ORTHO05D007014 2.2e-158 562.8 397 72.3
ClCG05G002330 Citrullus lanatus HOM05D005612 ORTHO05D007014 2.8e-158 562.4 404 69.1
Hma1.2p1_0511F.1_g169190 Hydrangea macrophylla HOM05D005612 ORTHO05D007014 3.1e-157 558.9 390 71.3
DCAR_008555 Daucus carota HOM05D005612 ORTHO05D007014 5.4e-157 558.1 391 70.3
PSO339G2081 Papaver somniferum HOM05D005612 ORTHO05D007014 2.0e-156 556.2 392 71.2
PSO384G4101 Papaver somniferum HOM05D005612 ORTHO05D007014 2.3e-155 552.7 392 70.7
Nitab4.5_0000264g0010 Nicotiana tabacum HOM05D005612 ORTHO05D007014 5.6e-154 548.1 393 68.7
Phvul.011G138100 Phaseolus vulgaris HOM05D005612 ORTHO05D007014 7.3e-154 547.7 389 71.7
Glyma.12G134000 Glycine max HOM05D005612 ORTHO05D007014 1.2e-153 547.0 389 71.0
Cfa015219 Carpinus fangiana HOM05D005612 ORTHO05D007014 1.6e-153 546.6 381 72.7
Haze_16797 Corylus avellana HOM05D005612 ORTHO05D007014 1.6e-153 546.6 363 74.9
Peaxi162Scf00045g01936 Petunia axillaris HOM05D005612 ORTHO05D007014 2.8e-153 545.8 388 69.8
AUR62000130 Chenopodium quinoa HOM05D005612 ORTHO05D007014 8.0e-153 544.3 402 69.2
Cc02_g24020 Coffea canephora HOM05D005612 ORTHO05D007014 8.0e-153 544.3 390 68.7
Lalb_Chr03g0039601 Lupinus albus HOM05D005612 ORTHO05D007014 1.0e-152 543.9 389 69.7
THA.LOC104827614 Tarenaya hassleriana HOM05D005612 ORTHO05D007014 1.8e-152 543.1 394 67.8
Hund07502 Selenicereus undatus HOM05D005612 ORTHO05D007014 4.0e-152 542.0 424 64.9
Carub.0004s2795 Capsella rubella HOM05D005612 ORTHO05D007014 5.7e-151 538.1 395 67.1
Glyma.06G270700 Glycine max HOM05D005612 ORTHO05D007014 5.7e-151 538.1 391 71.1
Migut.B01623 Erythranthe guttata HOM05D005612 ORTHO05D007014 7.5e-151 537.7 391 67.0
PGR042G0232 Punica granatum HOM05D005612 ORTHO05D007014 9.8e-151 537.3 383 68.7
MSTRG.17178 Avicennia marina HOM05D005612 ORTHO05D007014 2.2e-150 536.2 391 66.5
Psat0s2995g0040 Pisum sativum HOM05D005612 ORTHO05D007014 3.7e-150 535.4 389 69.4
TPR.G17234 Trifolium pratense HOM05D005612 ORTHO05D007014 6.4e-150 534.6 389 69.7
Solyc08g006610.3 Solanum lycopersicum HOM05D005612 ORTHO05D007014 9.2e-149 530.8 393 66.7
arahy.Tifrunner.gnm1.ann1.39QM8U Arachis hypogaea HOM05D005612 ORTHO05D007014 1.2e-148 530.4 389 69.9
EL10Ac4g10240 Beta vulgaris HOM05D005612 ORTHO05D007014 1.2e-148 530.4 391 67.3
arahy.Tifrunner.gnm1.ann1.Q1YE57 Arachis hypogaea HOM05D005612 ORTHO05D007014 2.7e-148 529.3 391 69.8
Lalb_Chr01g0021461 Lupinus albus HOM05D005612 ORTHO05D007014 3.0e-147 525.8 389 68.1
Sopen08g002560 Solanum pennellii HOM05D005612 ORTHO05D007014 6.6e-147 524.6 393 66.2
Thhalv10001485m.g Eutrema salsugineum HOM05D005612 ORTHO05D007014 1.9e-146 523.1 396 65.9
Oeu055499.1 Olea europaea HOM05D005612 ORTHO05D007014 5.6e-146 521.5 379 67.3
Medtr4g053430 Medicago truncatula HOM05D005612 ORTHO05D007014 9.5e-146 520.8 350 74.0
ECA236G2759 Erigeron canadensis HOM05D005612 ORTHO05D007014 1.2e-145 520.4 400 66.2
AL4G44420 Arabidopsis lyrata HOM05D005612 ORTHO05D007014 2.1e-145 519.6 394 66.2
CAN.G530.1 Capsicum annuum HOM05D005612 ORTHO05D007014 3.6e-145 518.8 395 66.1
Sabra14G0048200 Salix brachista HOM05D005612 ORTHO05D007014 6.2e-145 518.1 388 69.6
AT2G45320 Arabidopsis thaliana HOM05D005612 ORTHO05D007014 1.4e-144 516.9 402 64.9
Sp4g27340 Schrenkiella parvula HOM05D005612 ORTHO05D007014 5.2e-144 515.0 396 64.9
A03p25180 Brassica napus HOM05D005612 ORTHO05D007014 1.9e-141 506.5 396 63.4
BcaB01g03271 Brassica carinata HOM05D005612 ORTHO05D007014 1.2e-140 503.8 395 62.3
BraA03t11718Z Brassica rapa HOM05D005612 ORTHO05D007014 1.6e-140 503.4 396 62.9
Lj7C530T5 Lonicera japonica HOM05D005612 ORTHO05D007014 7.8e-140 501.1 424 61.6
vmacro21020 Vaccinium macrocarpon HOM05D005612 ORTHO05D007014 1.3e-139 500.4 396 64.9
Lsat_1_v5_gn_7_9741 Lactuca sativa HOM05D005612 ORTHO05D007014 2.3e-139 499.6 379 66.0
C03p30020 Brassica napus HOM05D005612 ORTHO05D007014 3.0e-139 499.2 396 62.4
SalBow5G3218 Salvia bowleyana HOM05D005612 ORTHO05D007014 7.3e-138 494.6 367 65.9
BcaC01g05140 Brassica carinata HOM05D005612 ORTHO05D007014 9.5e-138 494.2 396 62.6
BolC3t15349H Brassica oleracea HOM05D005612 ORTHO05D007014 9.5e-138 494.2 396 62.6
HanXRQChr04g0122751 Helianthus annuus HOM05D005612 ORTHO05D007014 6.2e-137 491.5 397 64.5
unitig_749.g14376 Utricularia gibba HOM05D005612 ORTHO05D007014 1.8e-136 490.0 391 62.9
Ca_19396_v3 Cicer arietinum L. HOM05D005612 ORTHO05D007014 8.9e-136 487.6 365 67.9
Lsat_1_v5_gn_8_86120 Lactuca sativa HOM05D005612 ORTHO05D007014 2.2e-134 483.0 373 65.7
Ah.04g161950 Amaranthus hybridus HOM05D004275 ORTHO05D005720 4.6e-132 475.3 418 60.3
Nitab4.5_0005450g0010 Nicotiana tabacum HOM05D005612 ORTHO05D007014 2.1e-129 466.5 393 61.3
Sc16g0011470 Simmondsia chinensis HOM05D005612 ORTHO05D007014 2.1e-129 466.5 349 67.6
MELO3C006197.2 Cucumis melo HOM05D005612 ORTHO05D007014 5.2e-128 461.8 336 68.8
PGSC0003DMG400026305 Solanum tuberosum HOM05D005612 ORTHO05D007014 5.8e-119 431.8 323 65.9
Zm00001eb195050 Zea mays HOM05D005612 ORTHO05D007014 2.9e-118 429.5 377 60.5
CDE07G1659 Ceratophyllum demersum HOM05D005612 ORTHO05D007014 1.0e-115 421.0 361 58.7
AUR62019310 Chenopodium quinoa HOM05D005612 ORTHO05D007014 4.5e-111 405.6 265 74.3
VMungo1127G0102 Vigna mungo HOM05D005612 ORTHO05D007014 3.8e-110 402.5 251 76.1
ATR1100G025 Amborella trichopoda HOM05D005612 ORTHO05D007014 1.5e-103 380.6 325 59.1
unitig_76.g29085 Utricularia gibba HOM05D005612 ORTHO05D007014 6.0e-100 368.6 391 51.2
MBI14_g08144_MAGBIO Magnolia biondii HOM05D005612 ORTHO05D007014 6.2e-97 358.6 265 69.1
CiPaw.09G176500 Carya illinoinensis HOM05D005612 ORTHO05D007014 6.7e-91 338.6 323 55.7
CARHR140520 Cardamine hirsuta HOM05D005612 ORTHO05D007014 2.2e-89 333.6 202 78.2
ATR0686G054 Amborella trichopoda HOM05D005612 ORTHO05D007014 1.1e-88 331.3 265 61.1
Aa31LG1G26830 Aethionema arabicum HOM05D005612 ORTHO05D007014 2.1e-84 317.0 186 78.0
Duzib138G0844 Durio zibethinus HOM05D005612 ORTHO05D007014 6.3e-81 305.4 163 88.3
SGA_v2.0_scaffold153G37000 Striga asiatica HOM05D005612 ORTHO05D007014 1.1e-74 284.6 226 64.2
Dinv32369 Davidia involucrata HOM05D005612 ORTHO05D007014 4.1e-72 276.2 194 71.6
SMO119G0175 Selaginella moellendorffii HOM05D005612 ORTHO05D007014 3.8e-70 269.6 279 47.0
Zm00001eb249030 Zea mays HOM05D005612 ORTHO05D007014 1.7e-65 254.2 204 63.2
Zm00001eb012290 Zea mays HOM05D005612 ORTHO05D007014 6.3e-65 252.3 188 64.4
FAN19G0199 Fragaria x ananassa HOM05D005612 ORTHO05D007014 5.5e-61 239.2 130 84.6
AagrBONN_evm.TU.Sc2ySwM_117.669 Anthoceros agrestis HOM05D005612 ORTHO05D007014 1.7e-54 217.6 217 48.8
Pp3c17_6010 Physcomitrium patens HOM05D005612 ORTHO05D007014 1.2e-50 204.9 357 35.0
MSTRG.28297 Avicennia marina HOM05D005612 ORTHO05D007014 2.6e-50 203.8 113 80.5
CARHR140530 Cardamine hirsuta HOM05D005612 ORTHO05D007014 3.7e-49 199.9 193 54.4
Gohir.A08G135200 Gossypium hirsutum HOM05D005612 ORTHO05D007014 9.1e-48 195.3 165 61.8
Medtr8g102045 Medicago truncatula HOM05D005612 ORTHO05D007014 5.2e-43 179.5 124 71.8
Medtr8g102040 Medicago truncatula HOM05D005612 ORTHO05D007014 1.3e-41 174.9 131 64.9
Zm00001eb385140 Zea mays HOM05D005612 ORTHO05D007014 3.7e-41 173.3 133 63.2
Zm00001eb084960 Zea mays HOM05D005612 ORTHO05D007014 4.1e-40 169.9 133 62.4
Gohir.A08G135550 Gossypium hirsutum HOM05D005612 ORTHO05D007014 2.5e-37 160.6 143 60.1
Oeu011925.1 Olea europaea HOM05D005612 ORTHO05D007014 4.4e-34 149.8 200 42.0
SEGI_33395 Sequoiadendron giganteum HOM05D005612 ORTHO05D007014 1.6e-31 141.4 185 47.6
Rhsim01G0149000 Rhododendron simsii HOM05D005612 ORTHO05D007014 3.5e-31 140.2 235 37.4
Zm00001eb270960 Zea mays HOM05D005612 ORTHO05D002685 9.5e-29 132.1 84 75.0
MBI14_g08143_MAGBIO Magnolia biondii HOM05D005612 ORTHO05D007014 9.8e-26 122.1 113 58.4
Glyma.20G076400 Glycine max HOM05D005612 ORTHO05D007014 2.2e-25 120.9 75 73.3
TAR626G0370 Trochodendron aralioides HOM05D005612 ORTHO05D007014 1.2e-23 115.2 63 85.7
Zm00001eb321930 Zea mays HOM05D005612 ORTHO05D007014 1.6e-23 114.8 109 55.0
Haze_18350 Corylus avellana HOM05D005612 ORTHO05D007014 2.3e-22 110.9 72 75.0
Os06g0571300 Oryza sativa ssp. japonica HOM05D005612 ORTHO05D007014 9.9e-18 95.5 95 57.9
MD15G1255900 Malus domestica HOM05D001392 ORTHO05D036605 3.9e-14 83.6 45 86.7
Lalb_Chr08g0243441 Lupinus albus HOM05D005612 ORTHO05D007014 3.6e-12 77.0 45 80.0
Medtr8g102042 Medicago truncatula HOM05D005612 ORTHO05D007014 3.6e-12 77.0 64 64.1
Dinv39084 Davidia involucrata HOM05D005612 ORTHO05D007014 2.2e-09 67.8 105 39.0
Lalb_Chr16g0388221 Lupinus albus HOM05D005612 ORTHO05D007014 6.0e-07 59.7 34 79.4


User provided reference genes

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