Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr2.243 Acer truncatum HOM05D002683 ORTHO05D007541 3.9e-168 594.7 300 100.0
Atru.BG.137.p Acer truncatum HOM05D002683 ORTHO05D007541 3.3e-50 203.0 355 39.7
PGR031G0028 Punica granatum HOM05D002683 ORTHO05D007541 3.2e-37 159.8 321 35.2
Ciclev10000632m.g Citrus clementina HOM05D002683 ORTHO05D007541 7.3e-34 148.7 96 75.0
Sabra05G0008400 Salix brachista HOM05D002683 ORTHO05D007541 2.0e-31 140.6 129 59.7
Potri.005G011300 Populus trichocarpa HOM05D002683 ORTHO05D007541 7.6e-31 138.7 96 70.8
Manes.08G110000 Manihot esculenta HOM05D002683 ORTHO05D007541 1.3e-30 137.9 96 70.8
Sabra05G0019700 Salix brachista HOM05D002683 ORTHO05D007541 1.7e-30 137.5 96 69.8
Gorai.013G130300 Gossypium raimondii HOM05D002683 ORTHO05D007541 4.9e-30 136.0 94 68.1
Gohir.D13G115800 Gossypium hirsutum HOM05D002683 ORTHO05D007541 1.1e-29 134.8 85 75.3
Gohir.A13G112800 Gossypium hirsutum HOM05D002683 ORTHO05D007541 2.4e-29 133.7 86 73.3
TPR.G2627 Trifolium pratense HOM05D002683 ORTHO05D007541 2.7e-28 130.2 108 63.0
Cc02_g35250 Coffea canephora HOM05D002683 ORTHO05D007541 3.5e-28 129.8 95 68.4
Thecc.05G325100 Theobroma cacao HOM05D002683 ORTHO05D007541 3.5e-28 129.8 96 65.6
Psat6g153160 Pisum sativum HOM05D002683 ORTHO05D007541 4.6e-28 129.4 107 61.7
Phvul.007G202600 Phaseolus vulgaris HOM05D002683 ORTHO05D007541 1.3e-27 127.9 108 59.3
Lj5g0006657 Lotus japonicus HOM05D002683 ORTHO05D007541 1.7e-27 127.5 107 61.7
Medtr1g084180 Medicago truncatula HOM05D002683 ORTHO05D007541 1.7e-27 127.5 108 61.1
SGA_v2.0_scaffold37G14589 Striga asiatica HOM05D002683 ORTHO05D007541 1.7e-27 127.5 97 66.0
VMungo0720G0539 Vigna mungo HOM05D002683 ORTHO05D007541 1.7e-27 127.5 108 62.0
Actinidia16873 Actinidia chinensis HOM05D002683 ORTHO05D007541 2.3e-27 127.1 373 29.0
Dinv30907 Davidia involucrata HOM05D000768 ORTHO05D007541 3.0e-27 126.7 114 58.8
TAR636G0049 Trochodendron aralioides HOM05D002683 ORTHO05D007541 3.0e-27 126.7 95 66.3
GSVIVG01031261001 Vitis vinifera HOM05D002683 ORTHO05D007541 3.0e-27 126.7 95 66.3
Duzib177G0986 Durio zibethinus HOM05D002683 ORTHO05D007541 5.1e-27 125.9 86 69.8
COL.COLO4_05532 Corchorus olitorius HOM05D002683 ORTHO05D007541 8.6e-27 125.2 95 63.2
BraA06t23813Z Brassica rapa HOM05D002683 ORTHO05D007541 1.5e-26 124.4 96 62.5
Ca_10182_v3 Cicer arietinum L. HOM05D002683 ORTHO05D007541 1.5e-26 124.4 100 63.0
A06p06020 Brassica napus HOM05D002683 ORTHO05D007541 1.9e-26 124.0 359 28.7
Cpa.g.sc48.178 Carica papaya HOM05D002683 ORTHO05D007541 2.5e-26 123.6 109 59.6
Eucgr.H03304 Eucalyptus grandis HOM05D002683 ORTHO05D007541 2.5e-26 123.6 96 62.5
SalBow3G0235 Salvia bowleyana HOM05D002683 ORTHO05D007541 2.5e-26 123.6 97 63.9
AT1G09280 Arabidopsis thaliana HOM05D002683 ORTHO05D007541 3.3e-26 123.2 105 58.1
THA.LOC104823718 Tarenaya hassleriana HOM05D002683 ORTHO05D007541 4.3e-26 122.9 96 61.5
BcaC05g24784 Brassica carinata HOM05D002683 ORTHO05D007541 5.6e-26 122.5 363 29.2
C05p07290 Brassica napus HOM05D002683 ORTHO05D007541 5.6e-26 122.5 363 29.2
BolC5t29487H Brassica oleracea HOM05D002683 ORTHO05D007541 5.6e-26 122.5 363 29.2
TWI12G0569 Tripterygium wilfordii HOM05D002683 ORTHO05D007541 5.6e-26 122.5 112 58.0
Lalb_Chr21g0310191 Lupinus albus HOM05D002683 ORTHO05D007541 7.3e-26 122.1 108 59.3
BcaB03g13281 Brassica carinata HOM05D002683 ORTHO05D007541 9.6e-26 121.7 99 58.6
CSS0018487 Camellia sinensis var. sinensis HOM05D002683 ORTHO05D007541 9.6e-26 121.7 96 63.5
Glyma.20G095800 Glycine max HOM05D002683 ORTHO05D007541 9.6e-26 121.7 108 59.3
AL1G19770 Arabidopsis lyrata HOM05D002683 ORTHO05D007541 1.2e-25 121.3 94 62.8
Hma1.2p1_0008F-1.1_g005450 Hydrangea macrophylla HOM05D002683 ORTHO05D007541 1.2e-25 121.3 96 63.5
MBI18_g27380_MAGBIO Magnolia biondii HOM05D002683 ORTHO05D007541 1.6e-25 120.9 107 57.0
Cfa006719 Carpinus fangiana HOM05D002683 ORTHO05D007541 2.1e-25 120.6 99 63.6
Thhalv10007152m.g Eutrema salsugineum HOM05D002683 ORTHO05D007541 2.1e-25 120.6 96 60.4
BcaB07g34132 Brassica carinata HOM05D002683 ORTHO05D007541 3.6e-25 119.8 116 53.4
Hund07305 Selenicereus undatus HOM05D002683 ORTHO05D007541 3.6e-25 119.8 369 29.0
Lju926A2G19 Lonicera japonica HOM05D002683 ORTHO05D007541 4.7e-25 119.4 85 70.6
Rhsim11G0097600 Rhododendron simsii HOM05D002683 ORTHO05D007541 4.7e-25 119.4 96 61.5
Aa31LG1G5850 Aethionema arabicum HOM05D002683 ORTHO05D007541 6.2e-25 119.0 99 57.6
DCAR_025291 Daucus carota HOM05D002683 ORTHO05D007541 6.2e-25 119.0 110 56.4
ECA236G2288 Erigeron canadensis HOM05D002683 ORTHO05D007541 6.2e-25 119.0 96 59.4
Sp1g07890 Schrenkiella parvula HOM05D002683 ORTHO05D007541 6.2e-25 119.0 99 57.6
Migut.N00946 Erythranthe guttata HOM05D002683 ORTHO05D007541 8.1e-25 118.6 98 62.2
vmacro01579 Vaccinium macrocarpon HOM05D002683 ORTHO05D007541 8.1e-25 118.6 96 61.5
Oeu000064.1 Olea europaea HOM05D002683 ORTHO05D007541 1.1e-24 118.2 97 59.8
Carub.0001s0862 Capsella rubella HOM05D002683 ORTHO05D007541 1.8e-24 117.5 99 59.6
MELO3C026102.2 Cucumis melo HOM05D002683 ORTHO05D007541 2.4e-24 117.1 97 61.9
PSO170G6550 Papaver somniferum HOM05D002683 ORTHO05D007541 2.4e-24 117.1 107 57.0
ATR0693G071 Amborella trichopoda HOM05D002683 ORTHO05D007541 3.1e-24 116.7 101 54.5
arahy.Tifrunner.gnm1.ann1.87Y8BK Arachis hypogaea HOM05D002683 ORTHO05D007541 3.1e-24 116.7 97 62.9
arahy.Tifrunner.gnm1.ann1.K1W924 Arachis hypogaea HOM05D002683 ORTHO05D007541 3.1e-24 116.7 97 62.9
Nn4g25521 Nelumbo nucifera HOM05D002683 ORTHO05D007541 3.1e-24 116.7 98 58.2
PSO357G0623 Papaver somniferum HOM05D002683 ORTHO05D007541 3.1e-24 116.7 96 61.5
CsaV3_1G015660 Cucumis sativus L. HOM05D002683 ORTHO05D007541 5.2e-24 115.9 97 60.8
Nitab4.5_0003838g0060 Nicotiana tabacum HOM05D002683 ORTHO05D007541 5.2e-24 115.9 97 60.8
CANSAT54G0992 Cannabis sativa HOM05D002683 ORTHO05D007541 6.9e-24 115.5 95 61.1
MD04G1192000 Malus domestica HOM05D002683 ORTHO05D007541 6.9e-24 115.5 95 62.1
CiPaw.08G154500 Carya illinoinensis HOM05D002683 ORTHO05D007541 8.9e-24 115.2 95 61.1
AUR62000421 Chenopodium quinoa HOM05D002683 ORTHO05D007541 8.9e-24 115.2 314 29.9
Prupe.6G310600 Prunus persica HOM05D002683 ORTHO05D007541 8.9e-24 115.2 111 55.9
Solyc01g100730.3 Solanum lycopersicum HOM05D002683 ORTHO05D007541 8.9e-24 115.2 101 62.4
PGSC0003DMG400002793 Solanum tuberosum HOM05D002683 ORTHO05D007541 1.2e-23 114.8 101 62.4
Glyma.10G146100 Glycine max HOM05D002683 ORTHO05D007541 1.5e-23 114.4 112 56.2
CAN.G1076.35 Capsicum annuum HOM05D002683 ORTHO05D007541 2.0e-23 114.0 96 60.4
Nitab4.5_0001338g0020 Nicotiana tabacum HOM05D002683 ORTHO05D007541 2.6e-23 113.6 114 54.4
ClCG01G011120 Citrullus lanatus HOM05D002683 ORTHO05D007541 3.4e-23 113.2 97 59.8
AUR62006767 Chenopodium quinoa HOM05D002683 ORTHO05D007541 4.4e-23 112.8 314 29.6
Peaxi162Scf00357g00734 Petunia axillaris HOM05D002683 ORTHO05D007541 7.6e-23 112.1 98 59.2
Aqoxy5G02708 Aquilegia oxysepala HOM05D002683 ORTHO05D007541 1.3e-22 111.3 97 60.8
HanXRQChr11g0338181 Helianthus annuus HOM05D002683 ORTHO05D007541 1.3e-22 111.3 82 67.1
Sopen01g044230 Solanum pennellii HOM05D002683 ORTHO05D007541 1.3e-22 111.3 101 61.4
CDE02G3281 Ceratophyllum demersum HOM05D002683 ORTHO05D007541 2.2e-22 110.5 98 55.1
Haze_04041 Corylus avellana HOM05D002683 ORTHO05D007541 2.2e-22 110.5 109 55.0
Sed0027160 Sechium edule HOM05D002683 ORTHO05D007541 2.2e-22 110.5 98 59.2
FAN14G5638 Fragaria x ananassa HOM05D002683 ORTHO05D007541 2.9e-22 110.2 99 55.6
RcHm_v2.0_Chr3g0457491 Rosa chinensis HOM05D002683 ORTHO05D007541 2.9e-22 110.2 111 53.2
Sc06g0005730 Simmondsia chinensis HOM05D002683 ORTHO05D007541 6.4e-22 109.0 95 62.1
FAN09G3521 Fragaria x ananassa HOM05D002683 ORTHO05D007541 8.4e-22 108.6 111 52.3
Zm00001eb028560 Zea mays HOM05D002683 ORTHO05D007541 3.5e-20 103.2 84 59.5
unitig_749.g13411 Utricularia gibba HOM05D002683 ORTHO05D007541 1.7e-19 100.9 133 45.9
FAN02G4083 Fragaria x ananassa HOM05D002683 ORTHO05D007541 3.0e-19 100.1 132 45.5
Os12g0563400 Oryza sativa ssp. japonica HOM05D002683 ORTHO05D007541 3.0e-19 100.1 84 57.1
HPP92_003768 Vanilla planifolia HOM05D002683 ORTHO05D007541 3.0e-19 100.1 86 60.5
EL10Ac4g09492 Beta vulgaris HOM05D002683 ORTHO05D007541 5.1e-19 99.4 97 53.6
Ah.04g158520 Amaranthus hybridus HOM05D002683 ORTHO05D007541 6.6e-19 99.0 146 43.2
FAN05G3006 Fragaria x ananassa HOM05D002683 ORTHO05D007541 8.7e-19 98.6 132 44.7
Mapoly0166s0012 Marchantia polymorpha HOM05D002683 ORTHO05D007541 3.3e-18 96.7 92 52.2
QL03p016208 Quercus lobata HOM05D002683 ORTHO05D007541 5.6e-18 95.9 95 57.9
SEGI_16486 Sequoiadendron giganteum HOM05D002683 ORTHO05D007541 1.6e-17 94.4 86 55.8
FvH4_6g07770 Fragaria vesca HOM05D002683 ORTHO05D007541 1.4e-16 91.3 99 52.5
Atru.chr2.247 Acer truncatum HOM05D002683 ORTHO05D007541 4.5e-15 86.3 155 42.6
Lsat_1_v5_gn_7_79981 Lactuca sativa HOM05D002683 ORTHO05D007541 5.8e-15 85.9 110 48.2
Ah.04g158510 Amaranthus hybridus HOM05D002683 ORTHO05D007541 6.4e-14 82.4 69 59.4
SMO147G0335 Selaginella moellendorffii HOM05D002683 ORTHO05D007541 1.1e-13 81.6 96 43.8
AagrBONN_evm.TU.Sc2ySwM_344.4363 Anthoceros agrestis HOM05D002683 ORTHO05D007541 3.5e-12 76.6 94 43.6
SEGI_04781 Sequoiadendron giganteum HOM05D002683 ORTHO05D007541 9.6e-10 68.6 51 58.8
HPP92_003769 Vanilla planifolia HOM05D002683 ORTHO05D007541 9.6e-10 68.6 73 47.9
HPP92_003748 Vanilla planifolia HOM05D002683 ORTHO05D007541 3.6e-09 66.6 54 64.8
TPR.G19824 Trifolium pratense HOM05D002683 ORTHO05D410724 4.8e-09 66.2 85 49.4
SMO025G0004 Selaginella moellendorffii HOM05D002683 ORTHO05D007541 6.2e-09 65.9 55 58.2
SMO273G0037 Selaginella moellendorffii HOM05D002683 ORTHO05D007541 6.2e-09 65.9 55 58.2
Pp3c5_28120 Physcomitrium patens HOM05D002683 ORTHO05D007541 1.4e-08 64.7 49 61.2
CBR_g985 Chara braunii HOM05D002683 ORTHO05D007541 9.9e-07 58.5 53 49.1
SalBow3G0722 Salvia bowleyana HOM05D000277 ORTHO05D000214 1.3e-06 58.2 37 75.7
Cre17.g719522 Chlamydomonas reinhardtii HOM05D002683 ORTHO05D007541 2.2e-06 57.4 44 59.1
Duzib128G0271 Durio zibethinus HOM05D002683 ORTHO05D007757 3.8e-06 56.6 41 68.3
Sabra13G0006000 Salix brachista HOM05D002683 ORTHO05D007757 3.8e-06 56.6 41 65.9
CiPaw.07G031200 Carya illinoinensis HOM05D002683 ORTHO05D007757 8.4e-06 55.5 41 63.4


User provided reference genes

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