Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr2.2424 Acer truncatum HOM05D005295 ORTHO05D005962 1.6e-133 479.6 259 100.0
Ciclev10009383m.g Citrus clementina HOM05D005295 ORTHO05D005962 5.1e-76 288.5 257 66.5
Ciclev10009380m.g Citrus clementina HOM05D005295 ORTHO05D005962 2.9e-71 272.7 257 62.6
Hma1.2p1_0387F.1_g141920 Hydrangea macrophylla HOM05D005295 ORTHO05D005962 6.2e-66 255.0 255 58.4
Thecc.07G095500 Theobroma cacao HOM05D005295 ORTHO05D005962 1.2e-64 250.8 261 52.1
Duzib213G0204 Durio zibethinus HOM05D005295 ORTHO05D005962 2.0e-64 250.0 266 56.8
Gohir.A04G035200 Gossypium hirsutum HOM05D005295 ORTHO05D005962 2.6e-64 249.6 263 52.1
Gorai.009G376000 Gossypium raimondii HOM05D005295 ORTHO05D005962 5.8e-64 248.4 263 52.1
Lj3g0021836 Lotus japonicus HOM05D005295 ORTHO05D005962 1.7e-63 246.9 253 52.6
CiPaw.11G171800 Carya illinoinensis HOM05D005295 ORTHO05D005962 6.5e-63 245.0 253 53.8
Haze_09452 Corylus avellana HOM05D005295 ORTHO05D005962 1.4e-62 243.8 260 58.8
Lalb_Chr20g0109501 Lupinus albus HOM05D005295 ORTHO05D005962 2.5e-62 243.0 256 51.2
Cfa020562 Carpinus fangiana HOM05D005295 ORTHO05D005962 4.2e-62 242.3 262 59.2
Sabra11G0101800 Salix brachista HOM05D005295 ORTHO05D005962 4.2e-62 242.3 256 58.2
Manes.03G106500 Manihot esculenta HOM05D005295 ORTHO05D005962 7.1e-62 241.5 261 57.9
VMungo1080G0752 Vigna mungo HOM05D005295 ORTHO05D005962 1.2e-61 240.7 253 51.8
Potri.001G396900 Populus trichocarpa HOM05D005295 ORTHO05D005962 2.1e-61 240.0 259 58.3
CSS0001236 Camellia sinensis var. sinensis HOM05D005295 ORTHO05D005962 3.5e-61 239.2 269 53.9
Phvul.005G075000 Phaseolus vulgaris HOM05D005295 ORTHO05D005962 7.9e-61 238.0 253 51.4
PGR083G0729 Punica granatum HOM05D005295 ORTHO05D005962 7.9e-61 238.0 260 56.5
COL.COLO4_36711 Corchorus olitorius HOM05D005295 ORTHO05D005962 1.0e-60 237.7 262 53.4
Medtr2g078650 Medicago truncatula HOM05D005295 ORTHO05D005962 1.8e-60 236.9 254 52.0
Potri.011G116200 Populus trichocarpa HOM05D005295 ORTHO05D005962 1.8e-60 236.9 256 55.1
Glyma.13G273800 Glycine max HOM05D005295 ORTHO05D005962 2.3e-60 236.5 254 52.0
Rhsim06G0201600 Rhododendron simsii HOM05D005295 ORTHO05D005962 3.0e-60 236.1 263 52.9
Sabra16G0260000 Salix brachista HOM05D005295 ORTHO05D005962 3.0e-60 236.1 260 51.9
TWI38G0013 Tripterygium wilfordii HOM05D005295 ORTHO05D005962 6.7e-60 235.0 262 49.2
MD03G1231400 Malus domestica HOM05D005295 ORTHO05D005962 3.3e-59 232.6 257 49.8
Actinidia12794 Actinidia chinensis HOM05D005295 ORTHO05D005962 4.3e-59 232.3 258 51.9
Lj8A154T78 Lonicera japonica HOM05D005295 ORTHO05D005962 4.3e-59 232.3 262 51.5
Aqoxy1G02337 Aquilegia oxysepala HOM05D005295 ORTHO05D005962 9.7e-59 231.1 266 47.7
arahy.Tifrunner.gnm1.ann1.3CLR9I Arachis hypogaea HOM05D005295 ORTHO05D005962 1.3e-58 230.7 265 52.5
arahy.Tifrunner.gnm1.ann1.B1NQ7W Arachis hypogaea HOM05D005295 ORTHO05D005962 1.3e-58 230.7 265 52.5
Cpa.g.sc622.2 Carica papaya HOM05D005295 ORTHO05D005962 2.2e-58 229.9 257 55.3
Gohir.D05G348200 Gossypium hirsutum HOM05D005295 ORTHO05D005962 2.2e-58 229.9 263 49.4
CANSAT56G1083 Cannabis sativa HOM05D005295 ORTHO05D005962 2.8e-58 229.6 269 48.3
Prupe.4G176600 Prunus persica HOM05D005295 ORTHO05D005962 2.8e-58 229.6 257 51.4
Cc05_g11790 Coffea canephora HOM05D005295 ORTHO05D005962 3.7e-58 229.2 276 53.6
GSVIVG01014296001 Vitis vinifera HOM05D005295 ORTHO05D005962 1.1e-57 227.6 257 49.0
Psat0s1402g0040 Pisum sativum HOM05D005295 ORTHO05D005962 1.8e-57 226.9 249 49.8
Ca_03531_v3 Cicer arietinum L. HOM05D005295 ORTHO05D005962 2.4e-57 226.5 255 56.5
TWI39G0015 Tripterygium wilfordii HOM05D005295 ORTHO05D005962 5.3e-57 225.3 261 51.3
Thhalv10026112m.g Eutrema salsugineum HOM05D005295 ORTHO05D005962 6.9e-57 224.9 267 54.3
Aa31LG5G9970 Aethionema arabicum HOM05D005295 ORTHO05D005962 9.0e-57 224.6 257 49.4
Migut.M00784 Erythranthe guttata HOM05D005295 ORTHO05D005962 9.0e-57 224.6 264 47.7
CsaV3_4G033520 Cucumis sativus L. HOM05D005295 ORTHO05D005962 2.6e-56 223.0 258 49.2
Eucgr.F01159 Eucalyptus grandis HOM05D005295 ORTHO05D005962 4.5e-56 222.2 260 55.4
MELO3C025603.2 Cucumis melo HOM05D005295 ORTHO05D005962 5.9e-56 221.9 258 49.2
Carub.0007s1331 Capsella rubella HOM05D005295 ORTHO05D005962 1.0e-55 221.1 264 53.8
ECA234G3281 Erigeron canadensis HOM05D005295 ORTHO05D005962 1.0e-55 221.1 261 53.3
Sopen12g005670 Solanum pennellii HOM05D005295 ORTHO05D005962 1.3e-55 220.7 266 53.4
Sp7g25480 Schrenkiella parvula HOM05D005295 ORTHO05D005962 2.2e-55 219.9 267 53.6
BraA01t01821Z Brassica rapa HOM05D005295 ORTHO05D005962 3.8e-55 219.2 265 53.2
Solyc12g013910.2 Solanum lycopersicum HOM05D005295 ORTHO05D005962 6.5e-55 218.4 272 52.2
SGA_v2.0_scaffold34G13800 Striga asiatica HOM05D005295 ORTHO05D005962 8.5e-55 218.0 250 48.4
THA.LOC104811877 Tarenaya hassleriana HOM05D005295 ORTHO05D005962 8.5e-55 218.0 255 48.2
Lsat_1_v5_gn_5_128440 Lactuca sativa HOM05D005295 ORTHO05D005962 1.1e-54 217.6 265 46.8
BcaNung06688 Brassica carinata HOM05D005295 ORTHO05D005962 1.4e-54 217.2 269 52.8
PGSC0003DMG400015366 Solanum tuberosum HOM05D005295 ORTHO05D005962 1.4e-54 217.2 272 51.8
Nn1g04175 Nelumbo nucifera HOM05D005295 ORTHO05D005962 1.9e-54 216.9 270 49.3
C01p23710 Brassica napus HOM05D005295 ORTHO05D005962 2.5e-54 216.5 268 52.6
AT4G27540 Arabidopsis thaliana HOM05D005295 ORTHO05D005962 3.2e-54 216.1 267 53.6
BcaNung06687 Brassica carinata HOM05D005295 ORTHO05D005962 3.2e-54 216.1 268 52.6
AL7G25230 Arabidopsis lyrata HOM05D005295 ORTHO05D005962 4.2e-54 215.7 267 53.6
A01p18770 Brassica napus HOM05D005295 ORTHO05D005962 5.5e-54 215.3 269 52.8
CARHR235220 Cardamine hirsuta HOM05D005295 ORTHO05D005962 5.5e-54 215.3 268 53.0
Oeu019302.2 Olea europaea HOM05D005295 ORTHO05D005962 7.2e-54 214.9 268 45.5
Sed0001385 Sechium edule HOM05D005295 ORTHO05D005962 7.2e-54 214.9 255 47.8
SGA_v2.0_scaffold73G24237 Striga asiatica HOM05D005295 ORTHO05D005962 2.1e-53 213.4 261 46.7
BolC1t02323H Brassica oleracea HOM05D005295 ORTHO05D005962 2.7e-53 213.0 268 51.9
ClCG11G017890 Citrullus lanatus HOM05D005295 ORTHO05D005962 1.4e-52 210.7 261 47.1
PSO675G2991 Papaver somniferum HOM05D005295 ORTHO05D005962 1.4e-52 210.7 283 46.3
HanXRQChr12g0361161 Helianthus annuus HOM05D005295 ORTHO05D005962 2.3e-52 209.9 268 49.3
Peaxi162Scf00000g00314 Petunia axillaris HOM05D005295 ORTHO05D005962 3.0e-52 209.5 273 50.9
SalBow8G4458 Salvia bowleyana HOM05D005295 ORTHO05D005962 3.0e-52 209.5 261 46.0
CAN.G213.18 Capsicum annuum HOM05D005295 ORTHO05D005962 2.5e-51 206.5 275 50.5
Nitab4.5_0000332g0010 Nicotiana tabacum HOM05D005295 ORTHO05D005962 1.7e-50 203.8 210 57.6
Ah.06g184530 Amaranthus hybridus HOM05D005295 ORTHO05D005962 1.4e-49 200.7 280 42.5
TPR.G7946 Trifolium pratense HOM05D005295 ORTHO05D005962 3.1e-49 199.5 250 45.6
DCAR_013119 Daucus carota HOM05D005295 ORTHO05D005962 4.1e-49 199.1 185 54.1
unitig_0.g1149 Utricularia gibba HOM05D005295 ORTHO05D005962 6.9e-49 198.4 257 44.0
MSTRG.6822 Avicennia marina HOM05D005295 ORTHO05D005962 1.2e-48 197.6 188 63.8
QL08p022700 Quercus lobata HOM05D005295 ORTHO05D005962 1.2e-48 197.6 373 41.3
MBI02_g22345_MAGBIO Magnolia biondii HOM05D005295 ORTHO05D005962 2.6e-48 196.4 267 43.8
Hund22882 Selenicereus undatus HOM05D005295 ORTHO05D005962 2.6e-48 196.4 280 45.0
EL10Ac4g08225 Beta vulgaris HOM05D005295 ORTHO05D005962 2.2e-47 193.4 275 43.6
FvH4_3g19520 Fragaria vesca HOM05D005295 ORTHO05D005962 8.5e-47 191.4 261 48.7
FAN21G0215 Fragaria x ananassa HOM05D005295 ORTHO05D005962 8.5e-47 191.4 261 48.7
Sc16g0007150 Simmondsia chinensis HOM05D005295 ORTHO05D005962 8.5e-47 191.4 196 53.6
FAN25G2205 Fragaria x ananassa HOM05D005295 ORTHO05D005962 2.5e-46 189.9 261 48.3
AUR62036172 Chenopodium quinoa HOM05D005295 ORTHO05D005962 9.4e-46 188.0 281 47.7
CDE05G1939 Ceratophyllum demersum HOM05D005295 ORTHO05D005962 1.6e-45 187.2 256 43.4
RcHm_v2.0_Chr5g0032761 Rosa chinensis HOM05D005295 ORTHO05D005962 1.6e-45 187.2 263 46.4
CDE05G3097 Ceratophyllum demersum HOM05D006331 ORTHO05D008043 1.5e-43 180.6 254 45.7
FAN11G0135 Fragaria x ananassa HOM05D005295 ORTHO05D005962 4.8e-42 175.6 257 43.6
HPP92_003730 Vanilla planifolia HOM05D005295 ORTHO05D005962 6.3e-42 175.3 261 41.0
BolC2t07912H Brassica oleracea HOM05D005295 ORTHO05D005962 5.3e-41 172.2 242 43.0
BcaC03g14369 Brassica carinata HOM05D005295 ORTHO05D005962 2.6e-40 169.9 242 43.0
Ciclev10010240m.g Citrus clementina HOM05D005295 ORTHO05D005962 2.9e-39 166.4 257 45.9
AUR62019458 Chenopodium quinoa HOM05D005295 ORTHO05D005962 5.0e-39 165.6 210 54.8
BcaB05g22086 Brassica carinata HOM05D005295 ORTHO05D005962 4.2e-38 162.5 248 40.3
ATR0150G019 Amborella trichopoda HOM05D005295 ORTHO05D005962 7.2e-38 161.8 258 38.4
C02p17850 Brassica napus HOM05D005295 ORTHO05D005962 5.2e-36 155.6 242 39.3
BcaC03g14372 Brassica carinata HOM05D005295 ORTHO05D005962 1.5e-35 154.1 242 39.3
BolC2t07916H Brassica oleracea HOM05D005295 ORTHO05D005962 1.5e-35 154.1 242 39.3
Zm00001eb231100 Zea mays HOM05D005295 ORTHO05D005962 1.4e-33 147.5 257 36.2
C02p17830 Brassica napus HOM05D005295 ORTHO05D005962 1.8e-33 147.1 179 45.3
SEGI_06803 Sequoiadendron giganteum HOM05D005295 ORTHO05D005962 3.1e-33 146.4 244 37.3
Eucgr.F01198 Eucalyptus grandis HOM05D005295 ORTHO05D005962 1.6e-32 144.1 136 66.9
Dinv14935 Davidia involucrata HOM05D005295 ORTHO05D005962 1.0e-31 141.4 232 42.7
A02p10710 Brassica napus HOM05D005295 ORTHO05D005962 3.8e-31 139.4 179 44.1
BraA02t06134Z Brassica rapa HOM05D005295 ORTHO05D005962 3.8e-31 139.4 179 44.1
vmacro11885 Vaccinium macrocarpon HOM05D005295 ORTHO05D005962 2.1e-29 133.7 262 37.0
Thhalv10015755m.g Eutrema salsugineum HOM05D005295 ORTHO05D005962 6.1e-29 132.1 187 40.6
Os09g0134400 Oryza sativa ssp. japonica HOM05D005295 ORTHO05D005962 8.8e-28 128.3 241 39.8
Lj1C840T8 Lonicera japonica HOM05D005295 ORTHO05D005962 1.8e-25 120.6 122 51.6
SMO285G0011 Selaginella moellendorffii HOM05D005295 ORTHO05D005962 9.1e-25 118.2 250 30.4
Mapoly0124s0020 Marchantia polymorpha HOM05D005295 ORTHO05D005962 1.0e-20 104.8 155 39.4
MD06G1175000 Malus domestica HOM05D005295 ORTHO05D005962 1.8e-20 104.0 108 50.0
Pp3c9_10810 Physcomitrium patens HOM05D005295 ORTHO05D005962 8.8e-20 101.7 176 34.7
Dinv12314 Davidia involucrata HOM05D005295 ORTHO05D005962 3.4e-19 99.8 125 46.4
BcaB06g26783 Brassica carinata HOM05D005295 ORTHO05D005962 1.1e-14 84.7 86 54.7
BcaNung07036 Brassica carinata HOM05D005295 ORTHO05D005962 7.2e-14 82.0 116 40.5
A01p38800 Brassica napus HOM05D005295 ORTHO05D005962 2.8e-13 80.1 117 40.2
BraA01t03927Z Brassica rapa HOM05D005295 ORTHO05D005962 2.8e-13 80.1 117 40.2
BcaC09g48479 Brassica carinata HOM05D005295 ORTHO05D005962 1.4e-12 77.8 117 39.3
BolC1t04893H Brassica oleracea HOM05D005295 ORTHO05D005962 1.4e-12 77.8 117 39.3
Hma1.2p1_0387F.1_g141930 Hydrangea macrophylla HOM05D005295 ORTHO05D005962 4.0e-12 76.3 83 49.4
BcaB04g20941 Brassica carinata HOM05D001464 ORTHO05D005962 8.9e-12 75.1 112 40.2
Duzib268G1416 Durio zibethinus HOM05D005295 ORTHO05D005962 4.4e-11 72.8 195 33.3
AagrBONN_evm.TU.Sc2ySwM_117.1842 Anthoceros agrestis HOM05D005295 ORTHO05D005962 7.5e-11 72.0 149 34.9
Carub.0003s1487 Capsella rubella HOM05D005295 ORTHO05D005962 2.8e-10 70.1 181 32.6
AL3G27610 Arabidopsis lyrata HOM05D005295 ORTHO05D005962 5.9e-08 62.4 89 37.1
Cc11_g09910 Coffea canephora HOM05D005295 ORTHO05D005962 1.5e-06 57.8 30 83.3


User provided reference genes

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