Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr2.2422 Acer truncatum HOM05D006259 ORTHO05D007804 2.9e-134 481.9 239 100.0
QL08p022713 Quercus lobata HOM05D006259 ORTHO05D007804 4.2e-101 371.7 236 76.3
Ciclev10008595m.g Citrus clementina HOM05D006259 ORTHO05D007804 2.3e-99 365.9 231 78.4
Cfa020561 Carpinus fangiana HOM05D006259 ORTHO05D007804 1.5e-98 363.2 231 77.1
Prupe.4G176500 Prunus persica HOM05D006259 ORTHO05D007804 4.8e-97 358.2 234 76.5
Dinv20198 Davidia involucrata HOM05D006259 ORTHO05D007804 6.3e-97 357.8 236 77.1
Haze_09453 Corylus avellana HOM05D006259 ORTHO05D007804 2.0e-95 352.8 237 73.0
CiPaw.11G171900 Carya illinoinensis HOM05D006259 ORTHO05D007804 3.5e-95 352.1 237 71.3
MD11G1252500 Malus domestica HOM05D006259 ORTHO05D007804 6.5e-94 347.8 236 73.3
RcHm_v2.0_Chr5g0032751 Rosa chinensis HOM05D006259 ORTHO05D007804 6.5e-94 347.8 234 72.2
Manes.15G089200 Manihot esculenta HOM05D006259 ORTHO05D007804 2.5e-93 345.9 234 73.1
CANSAT56G1257 Cannabis sativa HOM05D006259 ORTHO05D007804 2.7e-92 342.4 233 70.8
FvH4_3g19490 Fragaria vesca HOM05D006259 ORTHO05D007804 8.0e-92 340.9 231 72.3
Ciclev10010717m.g Citrus clementina HOM05D006259 ORTHO05D007804 1.4e-91 340.1 230 75.2
CSS0047365 Camellia sinensis var. sinensis HOM05D006259 ORTHO05D007804 1.8e-91 339.7 232 72.8
CSS0047678 Camellia sinensis var. sinensis HOM05D006259 ORTHO05D007804 1.8e-91 339.7 232 72.8
Eucgr.F01160 Eucalyptus grandis HOM05D006259 ORTHO05D007804 4.0e-91 338.6 233 72.5
Potri.011G116100 Populus trichocarpa HOM05D006259 ORTHO05D007804 5.2e-91 338.2 231 72.7
FAN11G4033 Fragaria x ananassa HOM05D006259 ORTHO05D007804 1.2e-90 337.0 231 71.4
Duzib244G0007 Durio zibethinus HOM05D006259 ORTHO05D007804 4.4e-90 335.1 234 73.1
GSVIVG01014295001 Vitis vinifera HOM05D006259 ORTHO05D007804 4.4e-90 335.1 235 71.5
vmacro11886 Vaccinium macrocarpon HOM05D006259 ORTHO05D007804 5.7e-90 334.7 236 72.0
TWI39G0898 Tripterygium wilfordii HOM05D006259 ORTHO05D007804 9.8e-90 334.0 239 70.7
Lj8A154G76 Lonicera japonica HOM05D006259 ORTHO05D007804 1.1e-88 330.5 231 71.9
MSTRG.15241 Avicennia marina HOM05D006259 ORTHO05D007804 1.2e-87 327.0 235 67.7
Sc16g0007160 Simmondsia chinensis HOM05D006259 ORTHO05D007804 2.7e-87 325.9 229 70.3
Thecc.07G095600 Theobroma cacao HOM05D006259 ORTHO05D007804 3.5e-87 325.5 234 70.5
Cpa.g.sc622.1 Carica papaya HOM05D006259 ORTHO05D007804 5.9e-87 324.7 233 70.0
Glyma.06G237700 Glycine max HOM05D006259 ORTHO05D007804 1.7e-86 323.2 226 70.4
Gohir.D05G348100 Gossypium hirsutum HOM05D006259 ORTHO05D007804 2.9e-86 322.4 230 70.9
Nitab4.5_0002330g0080 Nicotiana tabacum HOM05D006259 ORTHO05D007804 6.5e-86 321.2 232 69.4
Sabra11G0101700 Salix brachista HOM05D006259 ORTHO05D007804 1.1e-85 320.5 266 62.8
CAN.G162.38 Capsicum annuum HOM05D006259 ORTHO05D007804 1.5e-85 320.1 232 68.5
THA.LOC104811875 Tarenaya hassleriana HOM05D006259 ORTHO05D007804 1.9e-85 319.7 235 69.8
Sed0019446 Sechium edule HOM05D006259 ORTHO05D007804 2.5e-85 319.3 235 68.5
Gorai.009G375900 Gossypium raimondii HOM05D006259 ORTHO05D007804 3.3e-85 318.9 230 70.4
Cc05_g11780 Coffea canephora HOM05D006259 ORTHO05D007804 4.2e-85 318.5 234 68.8
Solyc07g062930.3 Solanum lycopersicum HOM05D006259 ORTHO05D007804 9.5e-85 317.4 232 69.4
Sopen07g031120 Solanum pennellii HOM05D006259 ORTHO05D007804 1.2e-84 317.0 232 69.4
Nitab4.5_0005017g0010 Nicotiana tabacum HOM05D006259 ORTHO05D007804 3.6e-84 315.5 232 67.7
Duzib268G0576 Durio zibethinus HOM05D006259 ORTHO05D007804 1.0e-83 313.9 234 69.7
Migut.M00783 Erythranthe guttata HOM05D006259 ORTHO05D007804 1.0e-83 313.9 232 66.8
arahy.Tifrunner.gnm1.ann1.J8ZMQ9 Arachis hypogaea HOM05D006259 ORTHO05D007804 2.3e-83 312.8 235 66.4
TPR.G32110 Trifolium pratense HOM05D006259 ORTHO05D007804 3.0e-83 312.4 232 66.4
SGA_v2.0_scaffold73G24236 Striga asiatica HOM05D006259 ORTHO05D007804 6.8e-83 311.2 229 67.2
TAR629G2204 Trochodendron aralioides HOM05D006259 ORTHO05D007804 6.8e-83 311.2 213 72.3
HanXRQChr11g0351981 Helianthus annuus HOM05D006259 ORTHO05D007804 1.2e-82 310.5 235 65.1
Peaxi162Scf00069g01731 Petunia axillaris HOM05D006259 ORTHO05D007804 2.6e-82 309.3 231 66.7
DCAR_017124 Daucus carota HOM05D006259 ORTHO05D007804 3.4e-82 308.9 230 66.5
Medtr8g058780 Medicago truncatula HOM05D006259 ORTHO05D007804 7.5e-82 307.8 232 64.7
Medtr8g061260 Medicago truncatula HOM05D006259 ORTHO05D007804 7.5e-82 307.8 232 64.7
ECA236G1201 Erigeron canadensis HOM05D006259 ORTHO05D007804 2.8e-81 305.8 235 65.1
Hund02234 Selenicereus undatus HOM05D006259 ORTHO05D007804 2.8e-81 305.8 229 67.2
Aqoxy1G02333 Aquilegia oxysepala HOM05D006259 ORTHO05D007804 1.1e-80 303.9 232 65.9
CsaV3_4G033510 Cucumis sativus L. HOM05D006259 ORTHO05D007804 7.0e-80 301.2 233 67.0
Phvul.011G163100 Phaseolus vulgaris HOM05D006259 ORTHO05D007804 1.2e-79 300.4 230 65.7
Nn1g06450 Nelumbo nucifera HOM05D006259 ORTHO05D007804 2.0e-79 299.7 231 65.8
Lalb_Chr19g0134121 Lupinus albus HOM05D006259 ORTHO05D007804 3.5e-79 298.9 231 65.8
arahy.Tifrunner.gnm1.ann1.KCB6L6 Arachis hypogaea HOM05D006259 ORTHO05D007804 4.5e-79 298.5 254 61.0
ClCG11G017880 Citrullus lanatus HOM05D006259 ORTHO05D007804 4.5e-79 298.5 225 66.2
Rhsim06G0201700 Rhododendron simsii HOM05D006259 ORTHO05D007804 4.5e-79 298.5 245 62.9
VMungo1127G0077 Vigna mungo HOM05D006259 ORTHO05D007804 2.3e-78 296.2 224 66.1
MELO3C025605.2 Cucumis melo HOM05D006259 ORTHO05D007804 3.8e-78 295.4 235 64.7
Lsat_1_v5_gn_7_104661 Lactuca sativa HOM05D006259 ORTHO05D007804 3.8e-78 295.4 232 62.5
EL10Ac4g08228 Beta vulgaris HOM05D006259 ORTHO05D007804 6.6e-78 294.7 233 65.7
AUR62019461 Chenopodium quinoa HOM05D006259 ORTHO05D007804 8.6e-78 294.3 229 67.2
Psat4g178120 Pisum sativum HOM05D006259 ORTHO05D007804 1.9e-77 293.1 235 63.0
Aa31LG3G10030 Aethionema arabicum HOM05D006259 ORTHO05D007804 2.5e-77 292.7 232 63.8
Thhalv10015851m.g Eutrema salsugineum HOM05D006259 ORTHO05D007804 7.3e-77 291.2 231 64.1
Ah.04g164700 Amaranthus hybridus HOM05D006259 ORTHO05D007804 9.5e-77 290.8 227 67.0
CARHR267060 Cardamine hirsuta HOM05D006259 ORTHO05D007804 4.7e-76 288.5 231 64.5
AL8G29030 Arabidopsis lyrata HOM05D006259 ORTHO05D007804 6.1e-76 288.1 236 63.6
BcaB05g22091 Brassica carinata HOM05D006259 ORTHO05D007804 6.1e-76 288.1 231 63.6
Sp6g16000 Schrenkiella parvula HOM05D006259 ORTHO05D007804 6.1e-76 288.1 231 63.2
AT5G53920 Arabidopsis thaliana HOM05D006259 ORTHO05D007804 1.0e-75 287.3 236 62.3
FAN16G3026 Fragaria x ananassa HOM05D006259 ORTHO05D007804 3.0e-75 285.8 200 71.5
FAN25G1146 Fragaria x ananassa HOM05D006259 ORTHO05D007804 4.0e-75 285.4 226 65.5
Carub.0008s1423 Capsella rubella HOM05D006259 ORTHO05D007804 8.9e-75 284.3 236 60.2
FAN21G1610 Fragaria x ananassa HOM05D006259 ORTHO05D007804 1.5e-74 283.5 231 64.1
Lj3g0016272 Lotus japonicus HOM05D006259 ORTHO05D007804 2.0e-74 283.1 228 64.0
A02p10700 Brassica napus HOM05D006259 ORTHO05D007804 5.8e-74 281.6 231 62.8
BcaC03g14368 Brassica carinata HOM05D006259 ORTHO05D007804 9.8e-74 280.8 231 62.3
C02p17820 Brassica napus HOM05D006259 ORTHO05D007804 1.6e-71 273.5 246 59.3
BolC2t07911H Brassica oleracea HOM05D006259 ORTHO05D007804 1.6e-71 273.5 246 59.3
CDE05G3386 Ceratophyllum demersum HOM05D006259 ORTHO05D007804 1.6e-71 273.5 231 58.4
BraA02t06133Z Brassica rapa HOM05D006259 ORTHO05D007804 2.7e-71 272.7 238 60.9
ATR0150G016 Amborella trichopoda HOM05D006259 ORTHO05D007804 5.0e-70 268.5 233 60.9
Os05g0497675 Oryza sativa ssp. japonica HOM05D006259 ORTHO05D007804 4.7e-68 261.9 231 54.5
Hma1.2p1_1411F.1_g281740 Hydrangea macrophylla HOM05D006259 ORTHO05D007804 2.3e-67 259.6 191 72.8
PGR083G2616 Punica granatum HOM05D006259 ORTHO05D007804 6.8e-67 258.1 198 66.2
arahy.Tifrunner.gnm1.ann1.IZH9YM Arachis hypogaea HOM05D006259 ORTHO05D007804 2.0e-66 256.5 199 65.3
PSO541G2103 Papaver somniferum HOM05D006259 ORTHO05D007804 2.0e-66 256.5 207 64.3
HPP92_017550 Vanilla planifolia HOM05D006259 ORTHO05D007804 3.4e-66 255.8 231 56.7
arahy.Tifrunner.gnm1.ann1.JJTS0M Arachis hypogaea HOM05D006259 ORTHO05D007804 9.8e-66 254.2 199 65.3
Oeu025362.1 Olea europaea HOM05D006259 ORTHO05D007804 1.3e-65 253.8 233 57.1
Gohir.A04G035300 Gossypium hirsutum HOM05D006259 ORTHO05D007804 6.4e-65 251.5 230 59.1
PSO675G6900 Papaver somniferum HOM05D006259 ORTHO05D007804 9.2e-64 247.7 215 61.4
Actinidia09701 Actinidia chinensis HOM05D006259 ORTHO05D007804 6.6e-62 241.5 174 71.3
Mapoly0161s0032 Marchantia polymorpha HOM05D006259 ORTHO05D007804 4.4e-58 228.8 234 50.4
Pp3c22_15620 Physcomitrium patens HOM05D006259 ORTHO05D007804 1.3e-57 227.3 229 51.1
unitig_46.g18320 Utricularia gibba HOM05D006259 ORTHO05D007804 1.6e-55 220.3 230 56.5
COL.COLO4_36712 Corchorus olitorius HOM05D006259 ORTHO05D007804 7.3e-53 211.5 172 65.1
AagrBONN_evm.TU.Sc2ySwM_362.1898 Anthoceros agrestis HOM05D006259 ORTHO05D007804 6.2e-52 208.4 228 48.2
SMO230G0105 Selaginella moellendorffii HOM05D006259 ORTHO05D007804 6.9e-43 178.3 198 48.5
Thecc.02G165400 Theobroma cacao HOM05D006259 ORTHO05D007804 2.0e-42 176.8 110 79.1
MBI18_g48079_MAGBIO Magnolia biondii HOM05D006259 ORTHO05D007804 1.6e-39 167.2 146 61.0
arahy.Tifrunner.gnm1.ann1.88153A Arachis hypogaea HOM05D006259 ORTHO05D007804 6.0e-39 165.2 148 56.8
MCO08G332 Micromonas commoda HOM05D006259 ORTHO05D007804 7.8e-39 164.9 235 41.3
PRCOL_00006646 Prasinoderma coloniale HOM05D006259 ORTHO05D007804 1.3e-38 164.1 237 37.1
arahy.Tifrunner.gnm1.ann1.NGC2LD Arachis hypogaea HOM05D006259 ORTHO05D007804 1.7e-38 163.7 152 55.3
Cre09.g396735 Chlamydomonas reinhardtii HOM05D006259 ORTHO05D007804 1.5e-37 160.6 231 39.4
arahy.Tifrunner.gnm1.ann1.H7I8JY Arachis hypogaea HOM05D006259 ORTHO05D007804 2.8e-36 156.4 152 53.3
PRCOL_00002790 Prasinoderma coloniale HOM05D006259 ORTHO05D007804 1.8e-35 153.7 248 36.7
arahy.Tifrunner.gnm1.ann1.N67PK3 Arachis hypogaea HOM05D006259 ORTHO05D007804 2.0e-34 150.2 172 48.8
arahy.Tifrunner.gnm1.ann1.LRZU8J Arachis hypogaea HOM05D006259 ORTHO05D007804 3.4e-34 149.4 148 54.1
arahy.Tifrunner.gnm1.ann1.5V52A0 Arachis hypogaea HOM05D006259 ORTHO05D007804 5.8e-34 148.7 136 55.9
arahy.Tifrunner.gnm1.ann1.UFBT31 Arachis hypogaea HOM05D006259 ORTHO05D007804 7.6e-34 148.3 139 55.4
arahy.Tifrunner.gnm1.ann1.SB88KA Arachis hypogaea HOM05D006259 ORTHO05D007804 2.2e-33 146.7 171 48.0
AUR62036169 Chenopodium quinoa HOM05D006259 ORTHO05D007804 1.4e-32 144.1 86 75.6
arahy.Tifrunner.gnm1.ann1.Y39XKR Arachis hypogaea HOM05D006259 ORTHO05D007804 5.4e-32 142.1 130 58.5
COL.COLO4_00923 Corchorus olitorius HOM05D006259 ORTHO05D007804 3.3e-29 132.9 225 32.0
Zm00001eb352610 Zea mays HOM05D006259 ORTHO05D007804 5.6e-29 132.1 90 62.2
HPP92_017577 Vanilla planifolia HOM05D006259 ORTHO05D007804 9.9e-26 121.3 195 38.5
PRCOL_00002336 Prasinoderma coloniale HOM05D006259 ORTHO05D007804 5.5e-16 89.0 228 29.4


User provided reference genes

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