Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr2.2347 Acer truncatum HOM05D011555 ORTHO05D013920 4.2e-161 571.2 273 100.0
CSS0020408 Camellia sinensis var. sinensis HOM05D011555 ORTHO05D013920 2.3e-79 299.7 271 52.8
CSS0024259 Camellia sinensis var. sinensis HOM05D011555 ORTHO05D013920 2.3e-79 299.7 271 52.8
CSS0048060 Camellia sinensis var. sinensis HOM05D011555 ORTHO05D013920 8.9e-79 297.7 266 51.9
Potri.001G373900 Populus trichocarpa HOM05D011555 ORTHO05D013920 2.2e-77 293.1 272 51.8
CSS0017204 Camellia sinensis var. sinensis HOM05D011555 ORTHO05D013920 5.9e-75 285.0 272 50.4
Rhsim06G0204000 Rhododendron simsii HOM05D011555 ORTHO05D013920 2.9e-74 282.7 264 52.3
QL08p023123 Quercus lobata HOM05D011555 ORTHO05D013920 1.9e-73 280.0 277 54.5
Lj1P836T37 Lonicera japonica HOM05D011555 ORTHO05D013920 1.9e-65 253.4 273 46.9
Sabra16G0246300 Salix brachista HOM05D011555 ORTHO05D013920 1.3e-58 230.7 231 49.4
DCAR_013132 Daucus carota HOM05D011555 ORTHO05D013920 1.4e-39 167.5 170 45.3
DCAR_017115 Daucus carota HOM05D011555 ORTHO05D013920 1.5e-38 164.1 174 45.4
DCAR_013133 Daucus carota HOM05D011555 ORTHO05D013920 8.4e-37 158.3 168 45.8
Actinidia12547 Actinidia chinensis HOM05D011555 ORTHO05D013920 1.9e-33 147.1 146 45.9
DCAR_018010 Daucus carota HOM05D011555 ORTHO05D013920 1.8e-26 124.0 120 46.7
TAR624G0446 Trochodendron aralioides HOM05D010647 ORTHO05D012576 5.6e-25 119.0 266 28.6
TAR625G1076 Trochodendron aralioides HOM05D002273 ORTHO05D000818 2.1e-16 90.5 226 27.4
AUR62014304 Chenopodium quinoa HOM05D010647 ORTHO05D012576 2.8e-16 90.1 273 25.6
HPP92_013985 Vanilla planifolia HOM05D002273 ORTHO05D000818 3.7e-16 89.7 247 25.9
Aqoxy2G04051 Aquilegia oxysepala HOM05D001705 ORTHO05D002725 6.2e-16 89.0 273 26.0
Aqoxy4G02851 Aquilegia oxysepala HOM05D002077 ORTHO05D000818 3.4e-14 83.2 236 29.2
PGSC0003DMG402014331 Solanum tuberosum HOM05D002077 ORTHO05D000818 2.2e-13 80.5 289 26.0
ECA238G3926 Erigeron canadensis HOM05D002077 ORTHO05D000818 5.5e-12 75.9 283 25.1
Atru.chr1.476 Acer truncatum HOM05D002077 ORTHO05D000818 7.1e-12 75.5 278 24.5
Medtr1g100707 Medicago truncatula HOM05D002077 ORTHO05D000818 7.1e-12 75.5 229 27.9
Potri.012G106700 Populus trichocarpa HOM05D010647 ORTHO05D012576 7.1e-12 75.5 274 25.9
Zm00001eb044180 Zea mays HOM05D002077 ORTHO05D000818 7.1e-12 75.5 283 26.1
arahy.Tifrunner.gnm1.ann1.KCRD8X Arachis hypogaea HOM05D002077 ORTHO05D000818 9.3e-12 75.1 274 25.5
HPP92_018671 Vanilla planifolia HOM05D002273 ORTHO05D000818 9.3e-12 75.1 264 24.2
TAR371G0597 Trochodendron aralioides HOM05D002273 ORTHO05D000818 1.2e-11 74.7 244 24.2
arahy.Tifrunner.gnm1.ann1.6H6H67 Arachis hypogaea HOM05D002077 ORTHO05D000818 2.1e-11 73.9 274 25.2
Gohir.A09G041000 Gossypium hirsutum HOM05D002077 ORTHO05D000818 3.5e-11 73.2 274 24.8
HPP92_015686 Vanilla planifolia HOM05D002273 ORTHO05D000818 3.5e-11 73.2 229 26.6
THA.LOC104806991 Tarenaya hassleriana HOM05D002077 ORTHO05D000818 6.1e-11 72.4 281 25.6
Lalb_Chr06g0161071 Lupinus albus HOM05D002077 ORTHO05D000818 1.3e-10 71.2 274 25.2
HPP92_018689 Vanilla planifolia HOM05D002273 ORTHO05D000818 1.3e-10 71.2 269 24.2
PGSC0003DMG401014331 Solanum tuberosum HOM05D002077 ORTHO05D000818 2.3e-10 70.5 284 23.9
Actinidia02878 Actinidia chinensis HOM05D002273 ORTHO05D000818 5.1e-10 69.3 249 24.9
Lj6A539T24 Lonicera japonica HOM05D002273 ORTHO05D000818 5.1e-10 69.3 249 24.1
Glyma.10G236900 Glycine max HOM05D002077 ORTHO05D000818 6.7e-10 68.9 274 24.8
Glyma.20G157500 Glycine max HOM05D002077 ORTHO05D000818 8.7e-10 68.6 274 24.5
Lj5g0027705 Lotus japonicus HOM05D002077 ORTHO05D000818 8.7e-10 68.6 278 24.1
Actinidia27496 Actinidia chinensis HOM05D002273 ORTHO05D000818 1.9e-09 67.4 257 24.9
Lj6A536G23 Lonicera japonica HOM05D002273 ORTHO05D000818 2.5e-09 67.0 269 24.5
Sabra15G0150400 Salix brachista HOM05D002077 ORTHO05D000818 3.3e-09 66.6 281 24.2
Prupe.2G293100 Prunus persica HOM05D002077 ORTHO05D000818 1.6e-08 64.3 277 24.2
Hund11495 Selenicereus undatus HOM05D002077 ORTHO05D000818 2.8e-08 63.5 273 24.2
Aqoxy1G03853 Aquilegia oxysepala HOM05D002077 ORTHO05D000818 4.8e-08 62.8 218 25.2
Potri.012G137700 Populus trichocarpa HOM05D002077 ORTHO05D000818 4.8e-08 62.8 274 24.5
HPP92_018691 Vanilla planifolia HOM05D002273 ORTHO05D000818 4.8e-08 62.8 233 23.2
AUR62038877 Chenopodium quinoa HOM05D010647 ORTHO05D012576 8.2e-08 62.0 264 22.3
HPP92_017711 Vanilla planifolia HOM05D004088 ORTHO05D004736 8.2e-08 62.0 276 23.6
AUR62019545 Chenopodium quinoa HOM05D010647 ORTHO05D012576 1.4e-07 61.2 267 23.2
HPP92_018673 Vanilla planifolia HOM05D002273 ORTHO05D000818 1.8e-07 60.8 233 23.2
RcHm_v2.0_Chr5g0003611 Rosa chinensis HOM05D026894 ORTHO05D029641 2.4e-07 60.5 114 33.3
AUR62019543 Chenopodium quinoa HOM05D010647 ORTHO05D012576 4.1e-07 59.7 267 22.8
RcHm_v2.0_Chr1g0377061 Rosa chinensis HOM05D002077 ORTHO05D000818 5.3e-07 59.3 260 25.4
MD01G1199600 Malus domestica HOM05D002077 ORTHO05D000818 6.9e-07 58.9 275 22.2
Potri.015G139700 Populus trichocarpa HOM05D002077 ORTHO05D000818 6.9e-07 58.9 274 23.7
AUR62019547 Chenopodium quinoa HOM05D010647 ORTHO05D012576 9.0e-07 58.5 264 22.0
AUR62036095 Chenopodium quinoa HOM05D010647 ORTHO05D012576 9.0e-07 58.5 204 24.5
Psat6g199880 Pisum sativum HOM05D002077 ORTHO05D000818 9.0e-07 58.5 276 23.6
vmacro08618 Vaccinium macrocarpon HOM05D002273 ORTHO05D000818 2.0e-06 57.4 285 25.3
QL09p041417 Quercus lobata HOM05D002077 ORTHO05D000818 5.9e-06 55.8 286 21.7
FvH4_7g29321 Fragaria vesca HOM05D002077 ORTHO05D000818 7.7e-06 55.5 187 26.2


User provided reference genes

Program Settings