Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr2.2344 Acer truncatum HOM05D006017 ORTHO05D007821 9.6e-291 1002.7 468 100.0
TWI38G0439 Tripterygium wilfordii HOM05D006017 ORTHO05D007821 3.4e-248 861.3 470 83.4
Cfa019614 Carpinus fangiana HOM05D006017 ORTHO05D007821 2.9e-247 858.2 457 86.7
Dinv14956 Davidia involucrata HOM05D006017 ORTHO05D007821 8.5e-247 856.7 450 86.0
PGSC0003DMG400015330 Solanum tuberosum HOM05D006017 ORTHO05D007821 8.5e-247 856.7 447 86.1
Sopen12g005880 Solanum pennellii HOM05D006017 ORTHO05D007821 4.2e-246 854.4 447 86.1
CSS0036883 Camellia sinensis var. sinensis HOM05D006017 ORTHO05D007821 5.5e-246 854.0 446 86.8
Solyc12g014100.2 Solanum lycopersicum HOM05D006017 ORTHO05D007821 7.2e-246 853.6 447 85.9
Haze_09368 Corylus avellana HOM05D006017 ORTHO05D007821 2.7e-245 851.7 489 81.8
Rhsim04G0023700 Rhododendron simsii HOM05D006017 ORTHO05D007821 3.6e-245 851.3 434 88.9
Actinidia18784 Actinidia chinensis HOM05D006017 ORTHO05D007821 1.0e-244 849.7 454 84.8
Prupe.4G172100 Prunus persica HOM05D006017 ORTHO05D007821 1.8e-244 849.0 467 83.1
vmacro09508 Vaccinium macrocarpon HOM05D006017 ORTHO05D007821 5.1e-244 847.4 470 82.6
Cpa.g.sc131.80 Carica papaya HOM05D006017 ORTHO05D007821 8.8e-244 846.7 449 86.0
Peaxi162Scf00000g00262 Petunia axillaris HOM05D006017 ORTHO05D007821 3.3e-243 844.7 450 84.9
Hma1.2p1_0416F.1_g148570 Hydrangea macrophylla HOM05D006017 ORTHO05D007821 5.7e-243 844.0 446 86.5
CiPaw.12G115700 Carya illinoinensis HOM05D006017 ORTHO05D007821 7.4e-243 843.6 460 84.1
Manes.03G103900 Manihot esculenta HOM05D006017 ORTHO05D007821 7.4e-243 843.6 447 85.5
MSTRG.14945 Avicennia marina HOM05D006017 ORTHO05D007821 8.2e-242 840.1 433 87.1
GSVIVG01014248001 Vitis vinifera HOM05D006017 ORTHO05D007821 8.2e-242 840.1 460 84.8
Gorai.002G065000 Gossypium raimondii HOM05D006017 ORTHO05D007821 3.1e-241 838.2 464 84.3
Lj8A152T86 Lonicera japonica HOM05D006017 ORTHO05D007821 4.1e-241 837.8 461 82.4
Cc05_g11510 Coffea canephora HOM05D006017 ORTHO05D007821 2.6e-240 835.1 466 81.8
Gohir.D01G045400 Gossypium hirsutum HOM05D006017 ORTHO05D007821 4.5e-240 834.3 464 83.8
RcHm_v2.0_Chr5g0031821 Rosa chinensis HOM05D006017 ORTHO05D007821 4.5e-240 834.3 447 84.3
FAN11G3087 Fragaria x ananassa HOM05D006017 ORTHO05D007821 5.9e-240 833.9 442 84.2
Gohir.A01G059400 Gossypium hirsutum HOM05D006017 ORTHO05D007821 5.9e-240 833.9 466 83.3
Migut.M00760 Erythranthe guttata HOM05D006017 ORTHO05D007821 1.3e-239 832.8 431 86.3
ECA240G4517 Erigeron canadensis HOM05D006017 ORTHO05D007821 1.7e-239 832.4 447 83.4
PGR083G0123 Punica granatum HOM05D006017 ORTHO05D007821 2.2e-239 832.0 433 86.6
ClCG07G009900 Citrullus lanatus HOM05D006017 ORTHO05D007821 6.5e-239 830.5 456 83.3
CANSAT35G1773 Cannabis sativa HOM05D006017 ORTHO05D007821 2.5e-238 828.6 433 86.6
Lsat_1_v5_gn_9_98620 Lactuca sativa HOM05D006017 ORTHO05D007821 3.2e-238 828.2 450 82.9
Sed0020976 Sechium edule HOM05D006017 ORTHO05D007821 5.5e-238 827.4 445 84.7
CiPaw.11G165400 Carya illinoinensis HOM05D006017 ORTHO05D007821 7.2e-238 827.0 442 84.8
CsaV3_4G008430 Cucumis sativus L. HOM05D006017 ORTHO05D007821 7.2e-238 827.0 444 84.5
Thecc.07G102400 Theobroma cacao HOM05D006017 ORTHO05D007821 7.2e-238 827.0 451 84.5
QL08p027671 Quercus lobata HOM05D006017 ORTHO05D007821 9.4e-238 826.6 464 82.3
FAN16G2700 Fragaria x ananassa HOM05D006017 ORTHO05D007821 1.2e-237 826.2 452 82.3
MBI07_g06432_MAGBIO Magnolia biondii HOM05D006017 ORTHO05D007821 1.2e-237 826.2 449 84.2
CAN.G739.4 Capsicum annuum HOM05D006017 ORTHO05D007821 6.1e-237 823.9 479 79.1
HanXRQChr03g0070991 Helianthus annuus HOM05D006017 ORTHO05D007821 1.0e-236 823.2 439 84.7
MELO3C016089.2 Cucumis melo HOM05D006017 ORTHO05D007821 3.0e-236 821.6 444 84.2
Eucgr.F01184 Eucalyptus grandis HOM05D006017 ORTHO05D007821 9.7e-235 816.6 463 80.6
Eucgr.F01185 Eucalyptus grandis HOM05D006017 ORTHO05D007821 1.3e-234 816.2 463 80.8
Lj3g0015312 Lotus japonicus HOM05D006017 ORTHO05D007821 1.3e-234 816.2 451 82.5
Aqoxy1G02214 Aquilegia oxysepala HOM05D006017 ORTHO05D007821 2.8e-234 815.1 452 81.0
ATR0749G089 Amborella trichopoda HOM05D006017 ORTHO05D007821 3.7e-234 814.7 446 82.1
Sc03g0010290 Simmondsia chinensis HOM05D006017 ORTHO05D007821 4.8e-234 814.3 432 84.5
Lalb_Chr03g0030841 Lupinus albus HOM05D006017 ORTHO05D007821 3.1e-233 811.6 433 84.3
Glyma.12G158600 Glycine max HOM05D006017 ORTHO05D007821 1.2e-232 809.7 438 84.7
Sabra16G0246500 Salix brachista HOM05D006017 ORTHO05D007821 1.2e-232 809.7 458 81.7
THA.LOC104811882 Tarenaya hassleriana HOM05D006017 ORTHO05D007821 1.2e-232 809.7 447 82.1
Sp6g16110 Schrenkiella parvula HOM05D006017 ORTHO05D007821 2.0e-232 808.9 445 82.9
Aa31LG3G9950 Aethionema arabicum HOM05D006017 ORTHO05D007821 2.6e-232 808.5 443 83.3
A02p10590 Brassica napus HOM05D006017 ORTHO05D007821 3.5e-232 808.1 450 81.3
BraA02t06124Z Brassica rapa HOM05D006017 ORTHO05D007821 3.5e-232 808.1 450 81.3
PSO541G6385 Papaver somniferum HOM05D006017 ORTHO05D007821 3.5e-232 808.1 433 84.1
C02p17670 Brassica napus HOM05D006017 ORTHO05D007821 4.5e-232 807.7 450 81.1
BcaB05g22107 Brassica carinata HOM05D006017 ORTHO05D007821 7.7e-232 807.0 450 81.6
FAN21G1753 Fragaria x ananassa HOM05D006017 ORTHO05D007821 7.7e-232 807.0 485 76.9
Medtr8g463280 Medicago truncatula HOM05D006017 ORTHO05D007821 7.7e-232 807.0 432 83.8
EL10Ac4g08290 Beta vulgaris HOM05D006017 ORTHO05D007821 1.3e-231 806.2 434 83.6
Phvul.011G148800 Phaseolus vulgaris HOM05D006017 ORTHO05D007821 1.3e-231 806.2 432 84.3
AL8G29200 Arabidopsis lyrata HOM05D006017 ORTHO05D007821 2.2e-231 805.4 454 81.7
Oeu061327.1 Olea europaea HOM05D006017 ORTHO05D007821 6.5e-231 803.9 494 76.1
Oeu061328.1 Olea europaea HOM05D006017 ORTHO05D007821 6.5e-231 803.9 494 76.1
Carub.0008s1436 Capsella rubella HOM05D006017 ORTHO05D007821 1.1e-230 803.1 439 82.7
Ca_23058_v3 Cicer arietinum L. HOM05D006017 ORTHO05D007821 1.9e-230 802.4 432 84.0
Ca_30664_v3 Cicer arietinum L. HOM05D006017 ORTHO05D007821 1.9e-230 802.4 432 84.0
DCAR_028453 Daucus carota HOM05D006017 ORTHO05D007821 3.2e-230 801.6 445 82.2
BcaC03g14354 Brassica carinata HOM05D006017 ORTHO05D007821 5.5e-230 800.8 450 80.7
BolC2t07897H Brassica oleracea HOM05D006017 ORTHO05D007821 1.2e-229 799.7 450 80.4
CARHR267270 Cardamine hirsuta HOM05D006017 ORTHO05D007821 6.1e-229 797.3 440 82.3
Psat4g138640 Pisum sativum HOM05D006017 ORTHO05D007821 6.1e-229 797.3 432 83.8
Potri.001G374100 Populus trichocarpa HOM05D006017 ORTHO05D007821 6.1e-229 797.3 451 81.6
PSO675G4947 Papaver somniferum HOM05D006017 ORTHO05D007821 2.3e-228 795.4 455 80.2
arahy.Tifrunner.gnm1.ann1.FV2XB3 Arachis hypogaea HOM05D006017 ORTHO05D007821 3.0e-228 795.0 433 82.0
arahy.Tifrunner.gnm1.ann1.DSNA77 Arachis hypogaea HOM05D006017 ORTHO05D007821 4.0e-228 794.7 442 80.8
Nitab4.5_0003077g0020 Nicotiana tabacum HOM05D006017 ORTHO05D007821 4.0e-228 794.7 487 77.0
VMungo1127G0952 Vigna mungo HOM05D006017 ORTHO05D007821 5.2e-228 794.3 435 82.5
AT5G54080 Arabidopsis thaliana HOM05D006017 ORTHO05D007821 6.7e-228 793.9 463 78.6
AUR62019513 Chenopodium quinoa HOM05D006017 ORTHO05D007821 9.1e-225 783.5 440 80.7
HPP92_003902 Vanilla planifolia HOM05D006017 ORTHO05D007821 4.2e-222 774.6 436 79.6
Ciclev10008509m.g Citrus clementina HOM05D006017 ORTHO05D007821 6.8e-220 767.3 398 88.9
AUR62036125 Chenopodium quinoa HOM05D006017 ORTHO05D007821 4.4e-219 764.6 440 78.2
unitig_46.g18314 Utricularia gibba HOM05D006017 ORTHO05D007821 5.4e-217 757.7 439 77.9
SGA_v2.0_scaffold73G24213 Striga asiatica HOM05D006017 ORTHO05D007821 7.0e-217 757.3 484 73.8
Os06g0103300 Oryza sativa ssp. japonica HOM05D006017 ORTHO05D007821 7.2e-214 747.3 433 78.5
CDE02G3882 Ceratophyllum demersum HOM05D006017 ORTHO05D007821 6.1e-213 744.2 440 77.0
Ah.04g164440 Amaranthus hybridus HOM05D006017 ORTHO05D007821 1.6e-208 729.6 441 75.7
Nn1g04303 Nelumbo nucifera HOM05D006017 ORTHO05D007821 3.5e-208 728.4 395 84.8
Zm00001eb379510 Zea mays HOM05D006017 ORTHO05D007821 1.0e-207 726.9 446 74.7
Hund22764 Selenicereus undatus HOM05D006017 ORTHO05D007821 2.4e-201 705.7 397 79.3
Mapoly0078s0002 Marchantia polymorpha HOM05D006017 ORTHO05D007821 7.0e-201 704.1 459 70.4
Pp3c16_940 Physcomitrium patens HOM05D006017 ORTHO05D007821 4.9e-194 681.4 439 70.8
Nitab4.5_0005445g0020 Nicotiana tabacum HOM05D006017 ORTHO05D007821 7.0e-193 677.6 421 75.3
AagrBONN_evm.TU.Sc2ySwM_228.2578 Anthoceros agrestis HOM05D006017 ORTHO05D007821 2.1e-192 676.0 431 70.5
Duzib170G0488 Durio zibethinus HOM05D006017 ORTHO05D007821 1.1e-190 670.2 437 73.2
Thhalv10013691m.g Eutrema salsugineum HOM05D006017 ORTHO05D007821 4.3e-190 668.3 450 70.4
SMO119G0176 Selaginella moellendorffii HOM05D006017 ORTHO05D007821 9.9e-179 630.6 436 65.8
FvH4_3g19020 Fragaria vesca HOM05D006017 ORTHO05D007821 3.4e-171 605.5 330 80.9
Hma1.2p1_0416F.1_g148580 Hydrangea macrophylla HOM05D006017 ORTHO05D007821 5.8e-171 604.7 300 90.0
Cre02.g091200 Chlamydomonas reinhardtii HOM05D006017 ORTHO05D007821 7.3e-166 587.8 458 62.0
SalBow8G4076 Salvia bowleyana HOM05D006017 ORTHO05D007821 1.4e-164 583.6 309 84.1
PRCOL_00000185 Prasinoderma coloniale HOM05D006017 ORTHO05D007821 1.4e-161 573.5 459 61.0
TPR.G22540 Trifolium pratense HOM05D006017 ORTHO05D007821 1.3e-157 560.5 386 70.7
MD03G1237500 Malus domestica HOM05D006017 ORTHO05D007821 3.4e-155 552.4 295 83.1
Glyma.06G234200 Glycine max HOM05D006017 ORTHO05D007821 7.9e-136 488.0 282 79.8
CSS0003418 Camellia sinensis var. sinensis HOM05D006017 ORTHO05D007821 2.7e-83 313.5 196 77.0
MD03G1237300 Malus domestica HOM05D006017 ORTHO05D007821 4.4e-78 296.2 168 80.4
SEGI_01915 Sequoiadendron giganteum HOM05D006017 ORTHO05D007821 1.5e-73 281.2 197 66.0
BcaC04g20394 Brassica carinata HOM05D006017 ORTHO05D007821 8.9e-71 271.9 369 45.5
FAN25G2436 Fragaria x ananassa HOM05D006017 ORTHO05D007821 7.6e-70 268.9 132 88.6
Rhsim07G0153900 Rhododendron simsii HOM05D006017 ORTHO05D000252 3.7e-69 266.5 254 53.1
Glyma.06G234050 Glycine max HOM05D006017 ORTHO05D007821 3.5e-67 260.0 133 86.5
C09p44170 Brassica napus HOM05D006017 ORTHO05D017343 5.6e-65 252.7 216 62.0
Nitab4.5_0004022g0010 Nicotiana tabacum HOM05D006017 ORTHO05D007821 3.1e-63 246.9 120 90.0
Oeu061326.1 Olea europaea HOM05D006017 ORTHO05D007821 5.8e-62 242.7 144 80.6
TAR436G0001 Trochodendron aralioides HOM05D006017 ORTHO05D007821 1.7e-61 241.1 142 80.3
CSS0021316 Camellia sinensis var. sinensis HOM05D006017 ORTHO05D007821 1.2e-51 208.4 124 75.0
TWI38G1497 Tripterygium wilfordii HOM05D006017 ORTHO05D007821 1.4e-47 194.9 119 75.6
A10p11370 Brassica napus HOM05D006017 ORTHO05D007821 3.4e-46 190.3 249 48.6
SEGI_25954 Sequoiadendron giganteum HOM05D006017 ORTHO05D007821 7.4e-33 146.0 84 76.2
BolC9t57289H Brassica oleracea HOM05D006017 ORTHO05D104628 2.5e-25 120.9 181 41.4
SEGI_23248 Sequoiadendron giganteum HOM05D006017 ORTHO05D007821 4.8e-24 116.7 68 73.5
CSS0031230 Camellia sinensis var. sinensis HOM05D006017 ORTHO05D007821 2.4e-23 114.4 105 55.2
FAN25G2983 Fragaria x ananassa HOM05D006017 ORTHO05D007821 2.4e-23 114.4 95 56.8
TWI38G0821 Tripterygium wilfordii HOM05D006017 ORTHO05D413584 1.5e-22 111.7 55 87.3
arahy.Tifrunner.gnm1.ann1.EZ2Q4B Arachis hypogaea HOM05D006004 ORTHO05D006976 2.2e-21 107.8 61 77.0
BraA10t43231Z Brassica rapa HOM05D006017 ORTHO05D017343 6.9e-15 86.3 68 60.3
Mapoly0432s0001 Marchantia polymorpha HOM05D019566 ORTHO05D017343 4.4e-09 67.0 43 67.4
HPP92_003866 Vanilla planifolia HOM05D006017 ORTHO05D007821 5.7e-09 66.6 58 60.3


User provided reference genes

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