Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr2.2145 Acer truncatum HOM05D006614 ORTHO05D008217 0.0e+00 1124.0 567 100.0
Gohir.D07G233600 Gossypium hirsutum HOM05D006614 ORTHO05D008217 2.5e-200 702.6 589 63.2
Gohir.A07G226400 Gossypium hirsutum HOM05D006614 ORTHO05D008217 3.2e-200 702.2 589 63.0
COL.COLO4_17543 Corchorus olitorius HOM05D006614 ORTHO05D008217 7.2e-200 701.0 591 62.3
Gorai.001G269000 Gossypium raimondii HOM05D006614 ORTHO05D008217 4.7e-199 698.4 589 63.2
TWI38G0322 Tripterygium wilfordii HOM05D006614 ORTHO05D008217 1.2e-197 693.7 589 63.0
Manes.15G094800 Manihot esculenta HOM05D006614 ORTHO05D008217 4.4e-197 691.8 594 60.9
Thecc.07G117000 Theobroma cacao HOM05D006614 ORTHO05D008217 4.8e-196 688.3 589 62.3
GSVIVG01014198001 Vitis vinifera HOM05D006614 ORTHO05D008217 3.1e-195 685.6 584 60.4
Cpa.g.sc77.8 Carica papaya HOM05D006614 ORTHO05D008217 5.3e-195 684.9 604 60.6
CSS0027020 Camellia sinensis var. sinensis HOM05D006614 ORTHO05D008217 3.5e-194 682.2 612 60.0
Potri.001G390600 Populus trichocarpa HOM05D006614 ORTHO05D008217 1.3e-193 680.2 597 59.3
Duzib213G0629 Durio zibethinus HOM05D006614 ORTHO05D008217 1.2e-191 673.7 586 61.4
RcHm_v2.0_Chr5g0030921 Rosa chinensis HOM05D006614 ORTHO05D008217 1.0e-190 670.6 610 57.0
Nitab4.5_0006953g0010 Nicotiana tabacum HOM05D006614 ORTHO05D008217 1.8e-190 669.8 600 57.3
PGR142G0467 Punica granatum HOM05D006614 ORTHO05D008217 2.3e-190 669.5 600 59.8
Peaxi162Scf00111g01423 Petunia axillaris HOM05D006614 ORTHO05D008217 5.2e-190 668.3 595 58.5
Ah.09g230960 Amaranthus hybridus HOM05D006614 ORTHO05D008217 3.4e-189 665.6 614 56.4
Nitab4.5_0003565g0010 Nicotiana tabacum HOM05D006614 ORTHO05D008217 3.4e-189 665.6 619 56.4
Migut.M00728 Erythranthe guttata HOM05D006614 ORTHO05D008217 9.8e-189 664.1 609 58.0
TAR375G0652 Trochodendron aralioides HOM05D006614 ORTHO05D008217 2.2e-188 662.9 632 57.8
FvH4_3g18290 Fragaria vesca HOM05D006614 ORTHO05D008217 3.7e-188 662.1 590 57.8
FAN16G2994 Fragaria x ananassa HOM05D006614 ORTHO05D008217 6.3e-188 661.4 589 57.7
CiPaw.11G160300 Carya illinoinensis HOM05D006614 ORTHO05D008217 1.8e-187 659.8 618 57.0
Sc16g0007600 Simmondsia chinensis HOM05D006614 ORTHO05D008217 7.0e-187 657.9 536 63.2
Dinv14994 Davidia involucrata HOM05D006614 ORTHO05D008217 1.6e-186 656.8 605 56.9
FAN11G1715 Fragaria x ananassa HOM05D006614 ORTHO05D008217 1.6e-186 656.8 589 57.4
vmacro23466 Vaccinium macrocarpon HOM05D006614 ORTHO05D008217 3.5e-186 655.6 606 56.8
Actinidia12578 Actinidia chinensis HOM05D006614 ORTHO05D008217 5.9e-186 654.8 591 57.5
AT3G14900 Arabidopsis thaliana HOM05D006614 ORTHO05D008217 1.0e-185 654.1 612 56.7
Sp3g13110 Schrenkiella parvula HOM05D006614 ORTHO05D008217 2.3e-185 652.9 614 56.4
BolC5t33914H Brassica oleracea HOM05D006614 ORTHO05D008217 2.9e-185 652.5 626 55.6
THA.LOC104822565 Tarenaya hassleriana HOM05D006614 ORTHO05D008217 3.8e-185 652.1 625 55.4
Thecc.07G116400 Theobroma cacao HOM05D006614 ORTHO05D008217 5.0e-185 651.7 516 65.3
A05p34510 Brassica napus HOM05D006614 ORTHO05D008217 8.6e-185 651.0 618 56.1
BraA05t22271Z Brassica rapa HOM05D006614 ORTHO05D008217 8.6e-185 651.0 618 56.1
Thhalv10022322m.g Eutrema salsugineum HOM05D006614 ORTHO05D008217 8.6e-185 651.0 609 55.8
C05p52250 Brassica napus HOM05D006614 ORTHO05D008217 5.5e-184 648.3 613 56.9
Glyma.14G066300 Glycine max HOM05D006614 ORTHO05D008217 1.6e-183 646.7 560 58.4
Hma1.2p1_0290F.1_g114830 Hydrangea macrophylla HOM05D006614 ORTHO05D008217 4.7e-183 645.2 596 57.0
MSTRG.6677 Avicennia marina HOM05D006614 ORTHO05D008217 6.1e-183 644.8 544 61.2
Carub.0003s1456 Capsella rubella HOM05D006614 ORTHO05D008217 8.0e-183 644.4 614 56.5
HanXRQChr15g0476201 Helianthus annuus HOM05D006614 ORTHO05D008217 2.3e-182 642.9 600 56.2
AL3G27220 Arabidopsis lyrata HOM05D006614 ORTHO05D008217 8.9e-182 641.0 613 55.8
Cc05_g11080 Coffea canephora HOM05D006614 ORTHO05D008217 8.9e-182 641.0 593 59.0
Sed0001562 Sechium edule HOM05D006614 ORTHO05D008217 1.2e-181 640.6 559 59.4
Medtr5g080700 Medicago truncatula HOM05D006614 ORTHO05D008217 1.5e-181 640.2 563 58.4
Prupe.4G164700 Prunus persica HOM05D006614 ORTHO05D008217 2.6e-181 639.4 613 56.9
ClCG11G017450 Citrullus lanatus HOM05D006614 ORTHO05D008217 3.4e-181 639.0 567 59.6
BcaB06g29517 Brassica carinata HOM05D006614 ORTHO05D008217 1.3e-180 637.1 587 56.9
Lj1P829T27 Lonicera japonica HOM05D006614 ORTHO05D008217 1.3e-180 637.1 553 59.1
Phvul.008G231100 Phaseolus vulgaris HOM05D006614 ORTHO05D008217 2.2e-180 636.3 556 58.3
CAN.G375.15 Capsicum annuum HOM05D006614 ORTHO05D008217 2.8e-180 636.0 590 55.3
PGSC0003DMG400046940 Solanum tuberosum HOM05D006614 ORTHO05D008217 2.8e-180 636.0 607 55.7
BcaB06g25331 Brassica carinata HOM05D006614 ORTHO05D008217 8.3e-180 634.4 616 55.7
DCAR_021025 Daucus carota HOM05D006614 ORTHO05D008217 9.2e-179 630.9 553 58.2
Psat2g179000 Pisum sativum HOM05D006614 ORTHO05D008217 2.0e-178 629.8 565 56.5
CARHR089840 Cardamine hirsuta HOM05D006614 ORTHO05D008217 2.7e-178 629.4 636 53.5
MD03G1243600 Malus domestica HOM05D006614 ORTHO05D008217 4.5e-178 628.6 610 56.9
CsaV3_4G033120 Cucumis sativus L. HOM05D006614 ORTHO05D008217 5.9e-178 628.2 544 59.9
Rhsim06G0208100 Rhododendron simsii HOM05D006614 ORTHO05D008217 5.9e-178 628.2 589 56.4
SalBow5G0223 Salvia bowleyana HOM05D006614 ORTHO05D008217 1.0e-177 627.5 574 57.0
TPR.G25839 Trifolium pratense HOM05D006614 ORTHO05D008217 1.3e-177 627.1 552 57.8
Solyc07g062440.1 Solanum lycopersicum HOM05D006614 ORTHO05D008217 6.6e-177 624.8 608 54.6
Sopen07g030680 Solanum pennellii HOM05D006614 ORTHO05D008217 1.5e-176 623.6 608 54.6
Cfa019566 Carpinus fangiana HOM05D006614 ORTHO05D008217 3.3e-176 622.5 582 57.4
EL10Ac8g18445 Beta vulgaris HOM05D006614 ORTHO05D008217 5.6e-176 621.7 613 53.5
VMungo0647G0674 Vigna mungo HOM05D006614 ORTHO05D008217 5.6e-176 621.7 576 56.4
Lalb_Chr17g0346371 Lupinus albus HOM05D006614 ORTHO05D008217 9.5e-176 620.9 549 57.9
Haze_09323 Corylus avellana HOM05D006614 ORTHO05D008217 1.2e-175 620.5 586 56.3
MELO3C025640.2 Cucumis melo HOM05D006614 ORTHO05D008217 1.6e-175 620.2 539 60.5
Ca_05900_v3 Cicer arietinum L. HOM05D006614 ORTHO05D008217 3.1e-174 615.9 557 56.2
LjContig00141g0022614 Lotus japonicus HOM05D006614 ORTHO05D008217 5.2e-174 615.1 571 56.6
Oeu061358.1 Olea europaea HOM05D006614 ORTHO05D008217 6.8e-174 614.8 578 56.2
SGA_v2.0_scaffold34G13782 Striga asiatica HOM05D006614 ORTHO05D008217 2.6e-173 612.8 605 53.7
Aa31LG8G2110 Aethionema arabicum HOM05D006614 ORTHO05D008217 2.4e-171 606.3 628 53.8
ECA240G1555 Erigeron canadensis HOM05D006614 ORTHO05D008217 3.2e-171 605.9 617 53.5
QL12p002313 Quercus lobata HOM05D006614 ORTHO05D008217 3.2e-171 605.9 530 60.0
PSO421G0295 Papaver somniferum HOM05D006614 ORTHO05D008217 7.0e-171 604.7 543 56.2
CANSAT35G1108 Cannabis sativa HOM05D006614 ORTHO05D008217 2.0e-170 603.2 616 54.7
arahy.Tifrunner.gnm1.ann1.087IU6 Arachis hypogaea HOM05D006614 ORTHO05D008217 6.0e-170 601.7 565 55.9
arahy.Tifrunner.gnm1.ann1.UH0U35 Arachis hypogaea HOM05D006614 ORTHO05D008217 1.3e-169 600.5 565 55.9
PSO063G1163 Papaver somniferum HOM05D006614 ORTHO05D008217 1.3e-169 600.5 610 51.8
MBI12_g10753_MAGBIO Magnolia biondii HOM05D006614 ORTHO05D008217 5.0e-169 598.6 482 63.3
Aqoxy1G00012 Aquilegia oxysepala HOM05D006614 ORTHO05D008217 6.6e-169 598.2 545 59.3
unitig_747.g21586 Utricularia gibba HOM05D006614 ORTHO05D008217 1.5e-168 597.0 541 56.0
CDE12G0873 Ceratophyllum demersum HOM05D006614 ORTHO05D008217 2.0e-165 586.6 537 57.2
AUR62021467 Chenopodium quinoa HOM05D006614 ORTHO05D008217 2.1e-159 566.6 606 51.3
ATR0810G004 Amborella trichopoda HOM05D006614 ORTHO05D008217 1.0e-153 547.7 579 52.8
FAN25G0567 Fragaria x ananassa HOM05D006614 ORTHO05D008217 5.1e-153 545.4 586 51.7
HPP92_015867 Vanilla planifolia HOM05D006614 ORTHO05D008217 9.6e-152 541.2 578 52.4
AUR62010952 Chenopodium quinoa HOM05D006614 ORTHO05D008217 6.2e-151 538.5 608 48.2
Hma1.2p1_0290F.1_g114840 Hydrangea macrophylla HOM05D006614 ORTHO05D008217 4.9e-148 528.9 495 56.0
vmacro11940 Vaccinium macrocarpon HOM05D006614 ORTHO05D008217 6.4e-148 528.5 555 50.5
Sabra16G0256000 Salix brachista HOM05D006614 ORTHO05D008217 2.3e-145 520.0 330 70.9
Eucgr.K01881 Eucalyptus grandis HOM05D006614 ORTHO05D008217 6.0e-138 495.4 621 47.5
Zm00001eb078480 Zea mays HOM05D006614 ORTHO05D008217 2.6e-133 479.9 534 49.4
Os04g0497900 Oryza sativa ssp. japonica HOM05D006614 ORTHO05D008217 2.1e-130 470.3 556 48.4
Psat0s3066g0080 Pisum sativum HOM05D006614 ORTHO05D008217 3.0e-129 466.5 382 58.9
Aqoxy3G00116 Aquilegia oxysepala HOM05D006614 ORTHO05D008217 5.7e-120 435.6 418 57.4
Ciclev10023881m.g Citrus clementina HOM05D006614 ORTHO05D008217 2.9e-108 396.7 374 57.8
Glyma.02G250300 Glycine max HOM05D006614 ORTHO05D008217 2.1e-98 364.0 340 57.6
SEGI_22211 Sequoiadendron giganteum HOM05D006614 ORTHO05D008217 7.5e-80 302.4 473 37.6
AagrBONN_evm.TU.Sc2ySwM_228.5094 Anthoceros agrestis HOM05D006614 ORTHO05D008217 4.9e-47 193.4 486 32.1
SMO356G0760 Selaginella moellendorffii HOM05D006614 ORTHO05D008217 6.4e-47 193.0 251 40.6
Pp3c16_3160 Physcomitrium patens HOM05D006614 ORTHO05D008217 1.7e-44 184.9 450 32.0
SMO356G0609 Selaginella moellendorffii HOM05D006614 ORTHO05D008217 4.7e-42 176.8 486 31.7
Mapoly0097s0086 Marchantia polymorpha HOM05D006614 ORTHO05D008217 3.4e-40 170.6 300 31.3
Cfa009322 Carpinus fangiana HOM05D006614 ORTHO05D008217 2.7e-29 134.4 102 58.8
MD11G1263800 Malus domestica HOM05D006614 ORTHO05D008217 6.6e-28 129.8 86 67.4
Dinv02793 Davidia involucrata HOM05D006614 ORTHO05D008217 5.3e-25 120.2 105 56.2
Psat0s3066g0040 Pisum sativum HOM05D006614 ORTHO05D008217 3.8e-23 114.0 69 76.8
HPP92_015860 Vanilla planifolia HOM05D006614 ORTHO05D008217 6.6e-20 103.2 70 67.1
CBR_g47994 Chara braunii HOM05D006614 ORTHO05D008217 5.6e-19 100.1 175 30.9
FAN21G3229 Fragaria x ananassa HOM05D006614 ORTHO05D008217 4.0e-17 94.0 61 68.9
Cfa001947 Carpinus fangiana HOM05D006614 ORTHO05D008217 5.3e-17 93.6 87 52.9
Aqoxy3G00115 Aquilegia oxysepala HOM05D006614 ORTHO05D008217 1.6e-13 82.0 99 49.5


User provided reference genes

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