Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr2.2102 Acer truncatum HOM05D005007 ORTHO05D006053 2.8e-52 208.4 107 100.0
Sabra16G0257800 Salix brachista HOM05D005007 ORTHO05D006053 5.4e-24 114.4 83 72.3
COL.COLO4_17528 Corchorus olitorius HOM05D005007 ORTHO05D006053 7.1e-24 114.0 105 64.8
Prupe.4G161500 Prunus persica HOM05D005007 ORTHO05D006053 7.1e-24 114.0 106 63.2
CiPaw.12G113100 Carya illinoinensis HOM05D005007 ORTHO05D006053 9.3e-24 113.6 107 63.6
Ciclev10022947m.g Citrus clementina HOM05D005007 ORTHO05D006053 1.2e-23 113.2 110 60.0
QL08p025919 Quercus lobata HOM05D005007 ORTHO05D006053 1.2e-23 113.2 101 64.4
Potri.001G393001 Populus trichocarpa HOM05D005007 ORTHO05D006053 3.5e-23 111.7 88 68.2
Thecc.07G118400 Theobroma cacao HOM05D005007 ORTHO05D006053 4.6e-23 111.3 108 63.9
Gorai.002G053600 Gossypium raimondii HOM05D005007 ORTHO05D006053 3.9e-22 108.2 106 57.5
Cpa.g.sc77.26 Carica papaya HOM05D005007 ORTHO05D006053 6.7e-22 107.5 101 56.4
Gohir.D01G042700 Gossypium hirsutum HOM05D005007 ORTHO05D006053 6.7e-22 107.5 106 56.6
MD11G1264800 Malus domestica HOM05D005007 ORTHO05D006053 8.7e-22 107.1 109 61.5
CANSAT35G0905 Cannabis sativa HOM05D005007 ORTHO05D006053 1.9e-21 105.9 83 61.4
TWI39G0558 Tripterygium wilfordii HOM05D005007 ORTHO05D006053 1.9e-21 105.9 90 72.2
Gohir.A01G053200 Gossypium hirsutum HOM05D005007 ORTHO05D006053 2.5e-21 105.5 109 56.0
RcHm_v2.0_Chr5g0030711 Rosa chinensis HOM05D005007 ORTHO05D006053 2.5e-21 105.5 106 56.6
Potri.001G389150 Populus trichocarpa HOM05D005007 ORTHO05D006053 5.6e-21 104.4 95 63.2
Eucgr.F01249 Eucalyptus grandis HOM05D005007 ORTHO05D006053 6.2e-20 100.9 94 56.4
CiPaw.11G159400 Carya illinoinensis HOM05D005007 ORTHO05D006053 8.1e-20 100.5 101 60.4
Haze_09314 Corylus avellana HOM05D005007 ORTHO05D006053 1.1e-19 100.1 102 64.7
Lalb_Chr03g0031211 Lupinus albus HOM05D005007 ORTHO05D006053 1.1e-19 100.1 103 59.2
Phvul.011G165600 Phaseolus vulgaris HOM05D005007 ORTHO05D006053 1.1e-19 100.1 96 61.5
Manes.15G095801 Manihot esculenta HOM05D005007 ORTHO05D006053 1.8e-19 99.4 105 60.0
Rhsim06G0209000 Rhododendron simsii HOM05D005007 ORTHO05D006053 1.8e-19 99.4 103 54.4
VMungo1127G1862 Vigna mungo HOM05D005007 ORTHO05D006053 1.8e-19 99.4 91 60.4
arahy.Tifrunner.gnm1.ann1.G1B0F8 Arachis hypogaea HOM05D005007 ORTHO05D006053 1.2e-18 96.7 95 55.8
Potri.011G108700 Populus trichocarpa HOM05D005007 ORTHO05D006053 1.5e-18 96.3 105 61.0
vmacro11948 Vaccinium macrocarpon HOM05D005007 ORTHO05D006053 1.3e-17 93.2 92 54.3
ClCG07G010220 Citrullus lanatus HOM05D005007 ORTHO05D006053 1.7e-17 92.8 99 55.6
Sed0025620 Sechium edule HOM05D005007 ORTHO05D006053 1.7e-17 92.8 107 53.3
Glyma.06G227850 Glycine max HOM05D005007 ORTHO05D006053 7.1e-16 87.4 107 54.2
Glyma.06G227900 Glycine max HOM05D005007 ORTHO05D006053 7.1e-16 87.4 107 54.2
Duzib160G0236 Durio zibethinus HOM05D005007 ORTHO05D006053 2.1e-15 85.9 79 53.2
Glyma.12G156400 Glycine max HOM05D005007 ORTHO05D006053 3.5e-15 85.1 102 52.9
TWI09G0208 Tripterygium wilfordii HOM05D005007 ORTHO05D006053 3.5e-15 85.1 82 51.2
GSVIVG01021255001 Vitis vinifera HOM05D005007 ORTHO05D006053 7.9e-15 84.0 98 50.0
CsaV3_4G008110 Cucumis sativus L. HOM05D005007 ORTHO05D006053 1.0e-14 83.6 96 50.0
Lalb_Chr01g0006861 Lupinus albus HOM05D005007 ORTHO05D006053 1.3e-14 83.2 105 53.3
Actinidia35210 Actinidia chinensis HOM05D005007 ORTHO05D006053 1.8e-14 82.8 102 52.9
MBI06_g18688_MAGBIO Magnolia biondii HOM05D005007 ORTHO05D006053 3.9e-14 81.6 102 46.1
EL10Ac4g08365 Beta vulgaris HOM05D005007 ORTHO05D006053 5.1e-14 81.3 54 72.2
Thecc.06G165800 Theobroma cacao HOM05D005007 ORTHO05D006053 5.1e-14 81.3 79 51.9
Aqoxy4G00249 Aquilegia oxysepala HOM05D005007 ORTHO05D006053 6.7e-14 80.9 78 61.5
Potri.011G070400 Populus trichocarpa HOM05D005007 ORTHO05D006053 1.1e-13 80.1 87 48.3
Sabra11G0096200 Salix brachista HOM05D005007 ORTHO05D006053 1.1e-13 80.1 92 55.4
Actinidia39520 Actinidia chinensis HOM05D005007 ORTHO05D006053 2.5e-13 79.0 85 48.2
Lsat_1_v5_gn_5_126541 Lactuca sativa HOM05D005007 ORTHO05D006053 3.3e-13 78.6 94 52.1
Ah.14g087010 Amaranthus hybridus HOM05D005007 ORTHO05D006053 4.3e-13 78.2 98 41.8
Manes.16G043000 Manihot esculenta HOM05D005007 ORTHO05D006053 4.3e-13 78.2 98 45.9
QL05p049974 Quercus lobata HOM05D005007 ORTHO05D006053 4.3e-13 78.2 70 54.3
Dinv32340 Davidia involucrata HOM05D005007 ORTHO05D006053 7.4e-13 77.4 96 46.9
TPR.G6805 Trifolium pratense HOM05D000213 ORTHO05D000426 1.3e-12 76.6 75 49.3
Duzib192G0425 Durio zibethinus HOM05D005007 ORTHO05D006053 1.6e-12 76.3 79 48.1
Ciclev10017907m.g Citrus clementina HOM05D005007 ORTHO05D006053 2.1e-12 75.9 102 45.1
Sabra04G0040400 Salix brachista HOM05D005007 ORTHO05D006053 2.1e-12 75.9 105 46.7
Sabra11G0055100 Salix brachista HOM05D005007 ORTHO05D006053 2.1e-12 75.9 99 48.5
Actinidia35601 Actinidia chinensis HOM05D005007 ORTHO05D006053 2.8e-12 75.5 98 42.9
Lsat_1_v5_gn_7_25701 Lactuca sativa HOM05D005007 ORTHO05D006053 2.8e-12 75.5 83 47.0
Sabra11G0058300 Salix brachista HOM05D005007 ORTHO05D006053 2.8e-12 75.5 73 53.4
Dinv12754 Davidia involucrata HOM05D005007 ORTHO05D006053 3.7e-12 75.1 98 41.8
HanXRQChr02g0038411 Helianthus annuus HOM05D005007 ORTHO05D006053 3.7e-12 75.1 73 53.4
Medtr8g087320 Medicago truncatula HOM05D005007 ORTHO05D006053 3.7e-12 75.1 97 46.4
RcHm_v2.0_Chr5g0011631 Rosa chinensis HOM05D005007 ORTHO05D006053 3.7e-12 75.1 84 50.0
Actinidia18804 Actinidia chinensis HOM05D005007 ORTHO05D006053 4.8e-12 74.7 89 50.6
Nn3g21105 Nelumbo nucifera HOM05D005007 ORTHO05D006053 4.8e-12 74.7 93 49.5
arahy.Tifrunner.gnm1.ann1.HJBU6U Arachis hypogaea HOM05D005007 ORTHO05D006053 6.2e-12 74.3 89 43.8
Ca_17898_v3 Cicer arietinum L. HOM05D005007 ORTHO05D006053 6.2e-12 74.3 76 47.4
ECA236G3784 Erigeron canadensis HOM05D005007 ORTHO05D006053 6.2e-12 74.3 75 48.0
Manes.17G059100 Manihot esculenta HOM05D005007 ORTHO05D006053 8.2e-12 73.9 95 45.3
Sc16g0007670 Simmondsia chinensis HOM05D005007 ORTHO05D006053 8.2e-12 73.9 92 45.7
Migut.M00716 Erythranthe guttata HOM05D005007 ORTHO05D006053 1.1e-11 73.6 89 42.7
Potri.004G061100 Populus trichocarpa HOM05D005007 ORTHO05D006053 1.1e-11 73.6 105 45.7
Haze_05357 Corylus avellana HOM05D005007 ORTHO05D006053 1.4e-11 73.2 74 44.6
Lalb_Chr13g0295281 Lupinus albus HOM05D005007 ORTHO05D006053 1.4e-11 73.2 80 48.8
Prupe.4G066600 Prunus persica HOM05D005007 ORTHO05D006053 1.4e-11 73.2 104 45.2
CSS0021075 Camellia sinensis var. sinensis HOM05D005007 ORTHO05D006053 2.4e-11 72.4 95 42.1
SalBow8G4395 Salvia bowleyana HOM05D005007 ORTHO05D006053 2.4e-11 72.4 78 43.6
arahy.Tifrunner.gnm1.ann1.VZS9XU Arachis hypogaea HOM05D005007 ORTHO05D006053 3.1e-11 72.0 95 42.1
Glyma.05G160900 Glycine max HOM05D005007 ORTHO05D006053 3.1e-11 72.0 63 54.0
Rhsim02G0146700 Rhododendron simsii HOM05D005007 ORTHO05D006053 3.1e-11 72.0 71 49.3
Phvul.002G241000 Phaseolus vulgaris HOM05D005007 ORTHO05D006053 4.0e-11 71.6 70 50.0
PGR042G3787 Punica granatum HOM05D005007 ORTHO05D006053 4.0e-11 71.6 71 52.1
SalBow7G2341 Salvia bowleyana HOM05D005007 ORTHO05D006053 4.0e-11 71.6 70 52.9
COL.COLO4_31238 Corchorus olitorius HOM05D005007 ORTHO05D006053 5.3e-11 71.2 103 40.8
DCAR_003989 Daucus carota HOM05D005007 ORTHO05D006053 5.3e-11 71.2 80 47.5
FAN11G0120 Fragaria x ananassa HOM05D005007 ORTHO05D006053 5.3e-11 71.2 103 44.7
Cpa.g.sc7.108 Carica papaya HOM05D005007 ORTHO05D006053 6.9e-11 70.9 83 48.2
MELO3C007199.2 Cucumis melo HOM05D005007 ORTHO05D006053 6.9e-11 70.9 88 42.0
Psat7g068680 Pisum sativum HOM05D005007 ORTHO05D006053 6.9e-11 70.9 74 47.3
PGSC0003DMG400028468 Solanum tuberosum HOM05D005007 ORTHO05D006053 6.9e-11 70.9 72 51.4
Glyma.08G118300 Glycine max HOM05D005007 ORTHO05D006053 9.0e-11 70.5 63 54.0
Gohir.A06G133600 Gossypium hirsutum HOM05D005007 ORTHO05D006053 9.0e-11 70.5 92 42.4
Gohir.D06G138700 Gossypium hirsutum HOM05D005007 ORTHO05D006053 9.0e-11 70.5 92 42.4
Peaxi162Scf00202g00119 Petunia axillaris HOM05D005007 ORTHO05D006053 9.0e-11 70.5 100 49.0
FvH4_3g07320 Fragaria vesca HOM05D005007 ORTHO05D006053 1.2e-10 70.1 103 43.7
Gorai.010G161300 Gossypium raimondii HOM05D005007 ORTHO05D006053 1.2e-10 70.1 92 42.4
Oeu060171.1 Olea europaea HOM05D005007 ORTHO05D006053 1.5e-10 69.7 98 43.9
FAN25G2704 Fragaria x ananassa HOM05D005007 ORTHO05D006053 2.0e-10 69.3 103 43.7
MD10G1275600 Malus domestica HOM05D005007 ORTHO05D006053 2.0e-10 69.3 104 41.3
Sed0011988 Sechium edule HOM05D005007 ORTHO05D006053 2.0e-10 69.3 89 40.4
CsaV3_6G051040 Cucumis sativus L. HOM05D005007 ORTHO05D006053 2.6e-10 68.9 58 55.2
AUR62039477 Chenopodium quinoa HOM05D005007 ORTHO05D006053 4.5e-10 68.2 84 46.4
FAN21G0366 Fragaria x ananassa HOM05D005007 ORTHO05D006053 4.5e-10 68.2 88 51.1
Gohir.A05G153450 Gossypium hirsutum HOM05D005007 ORTHO05D006053 4.5e-10 68.2 80 43.8
Gohir.D05G156101 Gossypium hirsutum HOM05D005007 ORTHO05D006053 7.6e-10 67.4 71 45.1
Hma1.2p1_0934F.1_g238510 Hydrangea macrophylla HOM05D005007 ORTHO05D006053 7.6e-10 67.4 77 50.6
DCAR_007938 Daucus carota HOM05D005007 ORTHO05D006053 1.0e-09 67.0 67 56.7
CDE10G0299 Ceratophyllum demersum HOM05D005007 ORTHO05D006053 1.3e-09 66.6 71 49.3
Duzib235G0435 Durio zibethinus HOM05D005007 ORTHO05D006053 1.3e-09 66.6 97 45.4
PGSC0003DMG400044408 Solanum tuberosum HOM05D005007 ORTHO05D006053 1.3e-09 66.6 89 40.4
Atru.chr10.1572 Acer truncatum HOM05D005007 ORTHO05D006053 1.7e-09 66.2 96 43.8
CiPaw.09G137100 Carya illinoinensis HOM05D005007 ORTHO05D006053 2.2e-09 65.9 93 43.0
Sed0017213 Sechium edule HOM05D005007 ORTHO05D006053 2.9e-09 65.5 58 51.7
Migut.H01413 Erythranthe guttata HOM05D005007 ORTHO05D006053 4.9e-09 64.7 72 50.0
Migut.H01416 Erythranthe guttata HOM05D005007 ORTHO05D006053 4.9e-09 64.7 72 50.0
MD00G1009400 Malus domestica HOM05D005007 ORTHO05D006053 4.9e-09 64.7 100 41.0
MD05G1295500 Malus domestica HOM05D005007 ORTHO05D006053 4.9e-09 64.7 100 41.0
FAN16G2723 Fragaria x ananassa HOM05D005007 ORTHO05D006053 6.5e-09 64.3 88 50.0
CSS0026874 Camellia sinensis var. sinensis HOM05D005007 ORTHO05D006053 8.4e-09 63.9 88 51.1
Oeu039881.1 Olea europaea HOM05D005007 ORTHO05D006053 1.1e-08 63.5 102 42.2
ClCG01G023890 Citrullus lanatus HOM05D005007 ORTHO05D006053 1.4e-08 63.2 65 52.3
Solyc02g072170.3 Solanum lycopersicum HOM05D005007 ORTHO05D006053 4.2e-08 61.6 98 46.9
Sopen02g021150 Solanum pennellii HOM05D005007 ORTHO05D006053 4.2e-08 61.6 98 46.9
Ah.09g233580 Amaranthus hybridus HOM05D005007 ORTHO05D006053 9.3e-08 60.5 86 41.9
HPP92_008753 Vanilla planifolia HOM05D005007 ORTHO05D006053 1.2e-07 60.1 102 35.3
Nitab4.5_0007471g0020 Nicotiana tabacum HOM05D005007 ORTHO05D006053 1.6e-07 59.7 78 47.4
Peaxi162Scf00111g01466 Petunia axillaris HOM05D005007 ORTHO05D006053 1.6e-07 59.7 77 48.1
ATR0012G015 Amborella trichopoda HOM05D005007 ORTHO05D006053 2.1e-07 59.3 91 41.8
Nitab4.5_0000437g0140 Nicotiana tabacum HOM05D005007 ORTHO05D006053 2.1e-07 59.3 78 48.7
CDE10G1215 Ceratophyllum demersum HOM05D005007 ORTHO05D006053 2.7e-07 58.9 48 58.3
Cc02_g15570 Coffea canephora HOM05D005007 ORTHO05D006053 3.5e-07 58.5 93 43.0
SGA_v2.0_scaffold181G39748 Striga asiatica HOM05D002453 ORTHO05D008746 3.5e-07 58.5 48 50.0
BraA08t33391Z Brassica rapa HOM05D005007 ORTHO05D006053 4.6e-07 58.2 63 44.4
BcaB04g18501 Brassica carinata HOM05D005007 ORTHO05D006053 6.0e-07 57.8 61 42.6
CARHR225660 Cardamine hirsuta HOM05D005007 ORTHO05D006053 7.9e-07 57.4 83 34.9
C03p81500 Brassica napus HOM05D005007 ORTHO05D006053 1.0e-06 57.0 63 44.4
BolC3t20421H Brassica oleracea HOM05D005007 ORTHO05D006053 1.0e-06 57.0 63 44.4
unitig_0.g744 Utricularia gibba HOM05D005007 ORTHO05D006053 1.0e-06 57.0 61 49.2
Thhalv10027446m.g Eutrema salsugineum HOM05D005007 ORTHO05D006053 1.8e-06 56.2 62 40.3
Actinidia16774 Actinidia chinensis HOM05D005007 ORTHO05D006053 3.9e-06 55.1 60 41.7
Carub.0007s2243 Capsella rubella HOM05D005007 ORTHO05D006053 5.1e-06 54.7 93 33.3
Sp7g17510 Schrenkiella parvula HOM05D005007 ORTHO05D006053 6.7e-06 54.3 61 41.0


User provided reference genes

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