Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr2.2041 Acer truncatum HOM05D004150 ORTHO05D005087 4.2e-278 960.7 472 100.0
Atru.chr2.2029 Acer truncatum HOM05D004150 ORTHO05D005087 1.6e-277 958.7 472 99.8
Ciclev10019972m.g Citrus clementina HOM05D004150 ORTHO05D005087 3.9e-231 804.7 481 82.7
Manes.03G091700 Manihot esculenta HOM05D004150 ORTHO05D005087 5.1e-215 751.1 476 78.4
Cfa019528 Carpinus fangiana HOM05D004150 ORTHO05D005087 1.9e-214 749.2 478 78.0
CiPaw.11G157600 Carya illinoinensis HOM05D004150 ORTHO05D005087 1.5e-211 739.6 477 76.5
VMungo1080G1533 Vigna mungo HOM05D004150 ORTHO05D005087 4.4e-211 738.0 480 77.3
Phvul.005G079200 Phaseolus vulgaris HOM05D004150 ORTHO05D005087 1.7e-210 736.1 479 76.8
Manes.15G097400 Manihot esculenta HOM05D004150 ORTHO05D005087 2.4e-209 732.3 475 76.2
Glyma.13G266400 Glycine max HOM05D004150 ORTHO05D005087 3.2e-209 731.9 481 76.9
Hma1.2p1_2701F.1_g327060 Hydrangea macrophylla HOM05D004150 ORTHO05D005087 4.6e-208 728.0 476 75.2
TWI38G0344 Tripterygium wilfordii HOM05D004150 ORTHO05D005087 6.0e-208 727.6 481 74.8
Glyma.12G231700 Glycine max HOM05D004150 ORTHO05D005087 3.9e-207 724.9 481 76.3
Potri.003G026500 Populus trichocarpa HOM05D004150 ORTHO05D005087 5.1e-207 724.5 476 75.0
CANSAT56G2087 Cannabis sativa HOM05D004150 ORTHO05D005087 8.7e-207 723.8 480 74.8
GSVIVG01014152001 Vitis vinifera HOM05D004150 ORTHO05D005087 8.7e-207 723.8 476 75.4
Potri.011G106600 Populus trichocarpa HOM05D004150 ORTHO05D005087 1.5e-206 723.0 478 75.1
CSS0001873 Camellia sinensis var. sinensis HOM05D004150 ORTHO05D005087 7.3e-206 720.7 478 74.9
Thecc.07G119700 Theobroma cacao HOM05D004150 ORTHO05D005087 9.6e-206 720.3 478 75.9
CSS0042666 Camellia sinensis var. sinensis HOM05D004150 ORTHO05D005087 6.2e-205 717.6 479 74.3
COL.COLO4_17523 Corchorus olitorius HOM05D004150 ORTHO05D005087 1.4e-204 716.5 480 75.4
PGR083G0816 Punica granatum HOM05D004150 ORTHO05D005087 1.4e-204 716.5 482 73.4
Psat5g234480 Pisum sativum HOM05D004150 ORTHO05D005087 1.8e-204 716.1 480 74.8
FAN21G0088 Fragaria x ananassa HOM05D004150 ORTHO05D005087 5.2e-204 714.5 479 75.6
Eucgr.F01300 Eucalyptus grandis HOM05D004150 ORTHO05D005087 6.9e-204 714.1 485 74.2
RcHm_v2.0_Chr5g0030011 Rosa chinensis HOM05D004150 ORTHO05D005087 6.9e-204 714.1 479 75.6
MD03G1246300 Malus domestica HOM05D004150 ORTHO05D005087 9.0e-204 713.8 480 74.2
FvH4_3g17970 Fragaria vesca HOM05D004150 ORTHO05D005087 1.5e-203 713.0 480 75.4
Gohir.A01G052900 Gossypium hirsutum HOM05D004150 ORTHO05D005087 1.3e-202 709.9 479 73.9
Gorai.002G053300 Gossypium raimondii HOM05D004150 ORTHO05D005087 6.4e-202 707.6 480 74.2
Ca_03941_v3 Cicer arietinum L. HOM05D004150 ORTHO05D005087 3.2e-201 705.3 481 73.2
Gohir.D01G042500 Gossypium hirsutum HOM05D004150 ORTHO05D005087 1.6e-200 703.0 480 73.8
Lj3g0004524 Lotus japonicus HOM05D004150 ORTHO05D005087 2.1e-200 702.6 484 74.0
Gohir.A13G149900 Gossypium hirsutum HOM05D004150 ORTHO05D005087 4.6e-200 701.4 476 74.4
TWI39G0561 Tripterygium wilfordii HOM05D004150 ORTHO05D005087 6.0e-200 701.0 482 71.6
Cc05_g10890 Coffea canephora HOM05D004150 ORTHO05D005087 1.3e-199 699.9 477 72.7
CsaV3_4G032910 Cucumis sativus L. HOM05D004150 ORTHO05D005087 4.3e-198 694.9 476 72.3
Medtr2g075340 Medicago truncatula HOM05D004150 ORTHO05D005087 5.6e-198 694.5 476 72.1
MD11G1267300 Malus domestica HOM05D004150 ORTHO05D005087 7.3e-198 694.1 480 71.7
FAN25G1025 Fragaria x ananassa HOM05D004150 ORTHO05D005087 2.1e-197 692.6 518 70.1
MBI06_g16571_MAGBIO Magnolia biondii HOM05D004150 ORTHO05D005087 5.3e-196 688.0 478 71.5
Sabra16G0254300 Salix brachista HOM05D004150 ORTHO05D005087 2.6e-195 685.6 524 67.2
FAN11G2611 Fragaria x ananassa HOM05D004150 ORTHO05D005087 3.4e-195 685.3 499 71.5
FAN16G0401 Fragaria x ananassa HOM05D004150 ORTHO05D005087 4.5e-195 684.9 516 69.6
CAN.G375.32 Capsicum annuum HOM05D004150 ORTHO05D005087 6.0e-192 674.5 519 64.0
Lsat_1_v5_gn_9_100501 Lactuca sativa HOM05D004150 ORTHO05D005087 7.9e-192 674.1 482 69.9
Lalb_Chr25g0285681 Lupinus albus HOM05D004150 ORTHO05D005087 1.3e-191 673.3 479 71.6
Nn6g34456 Nelumbo nucifera HOM05D004150 ORTHO05D005087 1.3e-191 673.3 477 69.4
HanXRQChr10g0305531 Helianthus annuus HOM05D004150 ORTHO05D005087 2.3e-191 672.5 481 68.6
Lj1A826G61 Lonicera japonica HOM05D004150 ORTHO05D005087 3.9e-191 671.8 488 70.1
Sc03g0010640 Simmondsia chinensis HOM05D004150 ORTHO05D005087 8.7e-191 670.6 483 69.4
THA.LOC104815577 Tarenaya hassleriana HOM05D004150 ORTHO05D005087 1.1e-190 670.2 480 68.8
ClCG11G017260 Citrullus lanatus HOM05D004150 ORTHO05D005087 2.5e-190 669.1 545 63.7
MELO3C025660.2 Cucumis melo HOM05D004150 ORTHO05D005087 3.3e-190 668.7 488 69.1
Sopen07g030520 Solanum pennellii HOM05D004150 ORTHO05D005087 9.6e-190 667.2 520 64.4
Solyc07g062250.3 Solanum lycopersicum HOM05D004150 ORTHO05D005087 2.1e-189 666.0 520 64.4
Aqoxy1G01964 Aquilegia oxysepala HOM05D004150 ORTHO05D005087 6.2e-189 664.5 476 67.6
MSTRG.14976 Avicennia marina HOM05D004150 ORTHO05D005087 8.1e-189 664.1 477 69.0
PGSC0003DMG400007094 Solanum tuberosum HOM05D004150 ORTHO05D005087 8.1e-189 664.1 519 64.2
Oeu058459.1 Olea europaea HOM05D004150 ORTHO05D005087 1.4e-188 663.3 478 68.6
EL10Ac4g08396 Beta vulgaris HOM05D004150 ORTHO05D005087 2.4e-188 662.5 480 67.3
Oeu010027.3 Olea europaea HOM05D004150 ORTHO05D005087 6.9e-188 661.0 502 66.3
THA.LOC104810428 Tarenaya hassleriana HOM05D004150 ORTHO05D005087 2.0e-187 659.4 480 69.0
Lalb_Chr19g0133751 Lupinus albus HOM05D004150 ORTHO05D005087 4.5e-187 658.3 481 69.9
vmacro09408 Vaccinium macrocarpon HOM05D004150 ORTHO05D005087 1.1e-185 653.7 484 67.4
Peaxi162Scf00111g01477 Petunia axillaris HOM05D004150 ORTHO05D005087 2.4e-185 652.5 520 63.3
HanXRQChr17g0556791 Helianthus annuus HOM05D004150 ORTHO05D005087 1.6e-184 649.8 475 67.8
Nitab4.5_0000347g0180 Nicotiana tabacum HOM05D004150 ORTHO05D005087 1.6e-184 649.8 519 63.4
Actinidia21439 Actinidia chinensis HOM05D004150 ORTHO05D005087 4.6e-184 648.3 480 68.8
TPR.G13030 Trifolium pratense HOM05D004150 ORTHO05D005087 1.8e-183 646.4 483 69.4
Gohir.D13G154200 Gossypium hirsutum HOM05D004150 ORTHO05D005087 3.0e-183 645.6 438 74.4
AL3G27140 Arabidopsis lyrata HOM05D004150 ORTHO05D005087 6.7e-183 644.4 481 66.9
PSO170G1443 Papaver somniferum HOM05D004150 ORTHO05D005087 1.1e-182 643.7 481 65.5
AT3G14830 Arabidopsis thaliana HOM05D004150 ORTHO05D005087 1.6e-181 639.8 482 66.0
SGA_v2.0_scaffold130G34274 Striga asiatica HOM05D004150 ORTHO05D005087 2.1e-181 639.4 502 64.7
PSO782G0021 Papaver somniferum HOM05D004150 ORTHO05D005087 6.2e-181 637.9 481 65.1
Rhsim04G0036400 Rhododendron simsii HOM05D004150 ORTHO05D005087 6.2e-181 637.9 486 66.7
Rhsim04G0035400 Rhododendron simsii HOM05D004150 ORTHO05D005087 1.4e-180 636.7 486 66.7
Aa31LG8G2040 Aethionema arabicum HOM05D004150 ORTHO05D005087 3.1e-180 635.6 481 65.1
Actinidia12595 Actinidia chinensis HOM05D004150 ORTHO05D005087 2.6e-179 632.5 543 60.4
Sp1g39990 Schrenkiella parvula HOM05D004150 ORTHO05D005087 2.6e-179 632.5 475 65.9
TAR629G2423 Trochodendron aralioides HOM05D004150 ORTHO05D005087 1.0e-178 630.6 436 70.6
Lalb_Chr03g0031251 Lupinus albus HOM05D004150 ORTHO05D005087 1.3e-178 630.2 479 66.4
Thhalv10011465m.g Eutrema salsugineum HOM05D004150 ORTHO05D005087 2.2e-178 629.4 476 65.1
Sed0003063 Sechium edule HOM05D004150 ORTHO05D005087 2.9e-178 629.0 437 71.9
CARHR089770 Cardamine hirsuta HOM05D004150 ORTHO05D005087 4.9e-178 628.2 482 66.2
BraA05t22282Z Brassica rapa HOM05D004150 ORTHO05D005087 1.4e-177 626.7 474 65.2
CARHR043670 Cardamine hirsuta HOM05D004150 ORTHO05D005087 1.4e-177 626.7 473 66.4
ECA234G0958 Erigeron canadensis HOM05D004150 ORTHO05D005087 1.6e-176 623.2 482 64.7
BolC5t33929H Brassica oleracea HOM05D004150 ORTHO05D005087 4.6e-176 621.7 475 64.6
C05p52450 Brassica napus HOM05D004150 ORTHO05D005087 7.9e-176 620.9 475 64.6
BcaC05g29034 Brassica carinata HOM05D004150 ORTHO05D005087 1.3e-175 620.2 475 64.4
Gorai.013G174200 Gossypium raimondii HOM05D004150 ORTHO05D005087 6.7e-175 617.8 490 66.3
A05p34660 Brassica napus HOM05D004150 ORTHO05D005087 3.3e-174 615.5 475 64.2
ATR0127G006 Amborella trichopoda HOM05D004150 ORTHO05D005087 4.3e-174 615.1 479 64.1
Carub.0003s1449 Capsella rubella HOM05D004150 ORTHO05D005087 7.4e-174 614.4 484 64.9
SalBow7G0391 Salvia bowleyana HOM05D004150 ORTHO05D005087 3.7e-173 612.1 476 65.5
Carub.0001s4264 Capsella rubella HOM05D004150 ORTHO05D005087 8.2e-173 610.9 476 64.1
BcaB06g25355 Brassica carinata HOM05D004150 ORTHO05D005087 1.5e-171 606.7 479 63.7
BraA06t23329Z Brassica rapa HOM05D004150 ORTHO05D005087 3.4e-171 605.5 476 63.4
AT1G53450 Arabidopsis thaliana HOM05D004150 ORTHO05D005087 5.9e-171 604.7 476 63.4
A06p01010 Brassica napus HOM05D004150 ORTHO05D005087 1.7e-170 603.2 476 63.2
BcaC08g43529 Brassica carinata HOM05D004150 ORTHO05D005087 2.9e-170 602.4 476 62.8
BolC6t35999H Brassica oleracea HOM05D004150 ORTHO05D005087 2.9e-170 602.4 476 62.8
AUR62019617 Chenopodium quinoa HOM05D004150 ORTHO05D005087 2.9e-170 602.4 481 63.6
AUR62039606 Chenopodium quinoa HOM05D004150 ORTHO05D005087 5.5e-169 598.2 481 63.2
C06p09220 Brassica napus HOM05D004150 ORTHO05D005087 9.3e-169 597.4 475 62.9
Migut.H02018 Erythranthe guttata HOM05D004150 ORTHO05D005087 1.6e-168 596.7 442 67.9
BcaB07g33329 Brassica carinata HOM05D004150 ORTHO05D005087 3.6e-168 595.5 474 62.2
Dinv15009 Davidia involucrata HOM05D004150 ORTHO05D005087 4.6e-168 595.1 390 74.9
Ah.04g164080 Amaranthus hybridus HOM05D004150 ORTHO05D005087 1.4e-167 593.6 479 62.6
Potri.001G386700 Populus trichocarpa HOM05D004150 ORTHO05D005087 1.8e-164 583.2 390 74.1
Prupe.4G158300 Prunus persica HOM05D004150 ORTHO05D005087 1.7e-162 576.6 408 72.1
Dinv18386 Davidia involucrata HOM05D004150 ORTHO05D005087 5.0e-162 575.1 387 73.6
Sabra11G0094900 Salix brachista HOM05D004150 ORTHO05D005087 6.3e-157 558.1 433 67.7
QL08p025853 Quercus lobata HOM05D004150 ORTHO05D005087 6.9e-156 554.7 290 90.0
Os01g0729900 Oryza sativa ssp. japonica HOM05D004150 ORTHO05D005087 3.4e-155 552.4 500 55.0
Duzib213G1096 Durio zibethinus HOM05D004150 ORTHO05D005087 7.7e-155 551.2 439 65.8
TAR627G0919 Trochodendron aralioides HOM05D004150 ORTHO05D005087 7.7e-155 551.2 391 71.4
Zm00001eb154220 Zea mays HOM05D004150 ORTHO05D005087 3.6e-152 542.3 498 54.8
ECA240G3777 Erigeron canadensis HOM05D004150 ORTHO05D005087 7.4e-150 534.6 396 67.7
Hund10457 Selenicereus undatus HOM05D004150 ORTHO05D005087 1.1e-148 530.8 439 63.1
Cpa.g.sc77.46 Carica papaya HOM05D004150 ORTHO05D005087 3.6e-144 515.8 283 84.8
Os05g0530300 Oryza sativa ssp. japonica HOM05D004150 ORTHO05D005087 3.6e-144 515.8 509 52.7
CiPaw.12G111300 Carya illinoinensis HOM05D004150 ORTHO05D005087 5.2e-143 511.9 349 74.5
HPP92_005189 Vanilla planifolia HOM05D004150 ORTHO05D005087 2.8e-141 506.1 397 62.2
CDE06G0863 Ceratophyllum demersum HOM05D004150 ORTHO05D005087 1.4e-140 503.8 464 57.1
Zm00001eb361900 Zea mays HOM05D004150 ORTHO05D005087 7.7e-139 498.0 461 54.4
Nitab4.5_0024430g0010 Nicotiana tabacum HOM05D004150 ORTHO05D005087 4.7e-136 488.8 287 78.4
Nn3g21055 Nelumbo nucifera HOM05D004150 ORTHO05D005087 1.8e-132 476.9 410 62.2
AL1G61960 Arabidopsis lyrata HOM05D004150 ORTHO05D005087 9.1e-132 474.6 306 70.9
unitig_21.g20061 Utricularia gibba HOM05D004150 ORTHO05D005087 2.3e-130 469.9 475 52.4
DCAR_013267 Daucus carota HOM05D004150 ORTHO05D005087 6.6e-122 441.8 326 65.0
AagrBONN_evm.TU.Sc2ySwM_362.2802 Anthoceros agrestis HOM05D004150 ORTHO05D005087 8.6e-114 414.8 532 45.1
Os06g0152800 Oryza sativa ssp. japonica HOM05D004150 ORTHO05D005087 1.9e-113 413.7 384 52.9
SMO169G0186 Selaginella moellendorffii HOM05D004150 ORTHO05D005087 4.7e-112 409.1 286 65.4
Mapoly0001s0101 Marchantia polymorpha HOM05D004150 ORTHO05D005087 3.7e-109 399.4 543 42.7
Zm00001eb271010 Zea mays HOM05D004150 ORTHO05D005087 6.6e-106 388.7 304 60.9
Pp3c9_8060 Physcomitrium patens HOM05D004150 ORTHO05D005087 1.2e-104 384.4 538 42.9
CDE02G2021 Ceratophyllum demersum HOM05D004150 ORTHO05D005087 4.9e-101 372.5 301 63.5
SEGI_28417 Sequoiadendron giganteum HOM05D004150 ORTHO05D005087 2.4e-100 370.2 472 41.7
Zm00001eb293260 Zea mays HOM05D004150 ORTHO05D005087 6.2e-88 328.9 377 49.3
Hma1.2p1_1650F.1_g295710 Hydrangea macrophylla HOM05D004150 ORTHO05D005087 1.6e-83 314.3 299 59.2
Mapoly0030s0045 Marchantia polymorpha HOM05D004150 ORTHO05D005087 3.7e-72 276.6 431 41.3
Haze_09270 Corylus avellana HOM05D004150 ORTHO05D005087 9.9e-70 268.5 205 64.4
Gorai.010G164000 Gossypium raimondii HOM05D004150 ORTHO05D005087 2.4e-55 220.7 179 64.2
Haze_09266 Corylus avellana HOM05D004150 ORTHO05D005087 3.1e-55 220.3 218 58.7
QL08p025867 Quercus lobata HOM05D004150 ORTHO05D005087 7.2e-44 182.6 191 57.1
Gohir.D04G018433 Gossypium hirsutum HOM05D004150 ORTHO05D005087 4.7e-43 179.9 95 86.3
Gorai.001G168800 Gossypium raimondii HOM05D004150 ORTHO05D005087 1.8e-42 177.9 93 87.1
Haze_09267 Corylus avellana HOM05D004150 ORTHO05D005087 4.4e-41 173.3 144 59.7
Haze_09268 Corylus avellana HOM05D004150 ORTHO05D005087 4.4e-41 173.3 144 59.7
Gohir.A11G228702 Gossypium hirsutum HOM05D004150 ORTHO05D005087 5.7e-41 172.9 93 83.9
Gohir.A02G079101 Gossypium hirsutum HOM05D004150 ORTHO05D005087 8.2e-40 169.1 153 62.1
AL1G62010 Arabidopsis lyrata HOM05D004150 ORTHO05D005087 5.3e-39 166.4 120 71.7
VMungo1309G1261 Vigna mungo HOM05D004150 ORTHO05D005087 3.8e-37 160.2 109 73.4
EL10Ac9g22809 Beta vulgaris HOM05D004150 ORTHO05D005087 4.7e-35 153.3 187 47.1
CDE09G0238 Ceratophyllum demersum HOM05D004150 ORTHO05D005087 5.7e-33 146.4 127 52.8
arahy.Tifrunner.gnm1.ann1.H8RDCT Arachis hypogaea HOM05D004150 ORTHO05D005087 9.7e-33 145.6 86 79.1
arahy.Tifrunner.gnm1.ann1.R67SZW Arachis hypogaea HOM05D004150 ORTHO05D005087 9.7e-33 145.6 86 79.1
Actinidia33318 Actinidia chinensis HOM05D004150 ORTHO05D005087 1.1e-28 132.1 175 43.4
BolC5t30531H Brassica oleracea HOM05D004150 ORTHO05D032065 8.8e-26 122.5 164 42.7
Aqoxy1G01962 Aquilegia oxysepala HOM05D004150 ORTHO05D005087 2.6e-25 120.9 111 58.6
Haze_11864 Corylus avellana HOM05D004150 ORTHO05D005087 2.2e-21 107.8 151 45.7
VMungo0251G3124 Vigna mungo HOM05D004150 ORTHO05D005087 2.0e-17 94.7 66 68.2
ECA240G1314 Erigeron canadensis HOM05D000062 ORTHO05D000043 1.0e-13 82.4 45 82.2


User provided reference genes

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