Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr2.2027 Acer truncatum HOM05D007893 ORTHO05D010042 8.4e-148 528.5 302 100.0
Atru.chr2.2039 Acer truncatum HOM05D007893 ORTHO05D010042 8.4e-148 528.5 302 100.0
Thecc.03G306900 Theobroma cacao HOM05D007893 ORTHO05D010042 4.3e-75 287.0 306 58.5
Cfa012483 Carpinus fangiana HOM05D007893 ORTHO05D010042 1.6e-74 285.0 306 51.6
COL.COLO4_16973 Corchorus olitorius HOM05D000070 ORTHO05D007358 2.7e-69 267.7 297 56.2
CiPaw.12G066600 Carya illinoinensis HOM05D007893 ORTHO05D010042 1.7e-68 265.0 282 55.0
Haze_08182 Corylus avellana HOM05D007893 ORTHO05D010042 3.0e-68 264.2 306 49.3
Lalb_Chr08g0231971 Lupinus albus HOM05D007893 ORTHO05D010042 1.1e-62 245.7 278 49.3
QL05p025350 Quercus lobata HOM05D007893 ORTHO05D010042 7.1e-62 243.0 308 52.9
TAR374G1349 Trochodendron aralioides HOM05D007893 ORTHO05D010042 1.1e-59 235.7 279 47.7
TWI81G0227 Tripterygium wilfordii HOM05D007893 ORTHO05D010042 7.3e-59 233.0 298 47.3
TWI60G0064 Tripterygium wilfordii HOM05D007893 ORTHO05D010042 3.6e-58 230.7 277 48.0
Glyma.01G016100 Glycine max HOM05D007893 ORTHO05D010042 8.1e-58 229.6 278 48.6
Gorai.004G065800 Gossypium raimondii HOM05D007893 ORTHO05D010042 1.4e-57 228.8 269 47.2
RcHm_v2.0_Chr3g0484571 Rosa chinensis HOM05D007893 ORTHO05D010042 1.8e-57 228.4 279 44.8
arahy.Tifrunner.gnm1.ann1.7C2XF6 Arachis hypogaea HOM05D007893 ORTHO05D010042 8.9e-57 226.1 278 47.5
arahy.Tifrunner.gnm1.ann1.40GBPJ Arachis hypogaea HOM05D007893 ORTHO05D010042 1.2e-56 225.7 278 47.5
PGR042G3148 Punica granatum HOM05D007893 ORTHO05D010042 2.9e-55 221.1 304 52.0
VMungo1215G2510 Vigna mungo HOM05D007893 ORTHO05D010042 1.1e-54 219.2 273 47.3
Phvul.002G138600 Phaseolus vulgaris HOM05D007893 ORTHO05D010042 1.4e-54 218.8 273 47.3
arahy.Tifrunner.gnm1.ann1.AUE0A3 Arachis hypogaea HOM05D007893 ORTHO05D010042 4.2e-54 217.2 268 47.4
ClCG10G008950 Citrullus lanatus HOM05D007893 ORTHO05D010042 5.4e-54 216.9 263 48.3
Cpa.g.sc159.24 Carica papaya HOM05D007893 ORTHO05D010042 6.0e-53 213.4 256 55.5
MD14G1081200 Malus domestica HOM05D007893 ORTHO05D010042 6.0e-53 213.4 278 44.2
GSVIVG01013113001 Vitis vinifera HOM05D007893 ORTHO05D010042 3.9e-52 210.7 294 49.3
Sed0014013 Sechium edule HOM05D007893 ORTHO05D010042 6.6e-52 209.9 279 51.3
Sc22g0001680 Simmondsia chinensis HOM05D007893 ORTHO05D010042 4.3e-51 207.2 282 43.6
Psat2g137760 Pisum sativum HOM05D007893 ORTHO05D010042 3.8e-47 194.1 279 45.2
Ca_08153_v3 Cicer arietinum L. HOM05D007893 ORTHO05D010042 1.1e-46 192.6 239 45.6
vmacro00309 Vaccinium macrocarpon HOM05D007893 ORTHO05D010042 1.4e-46 192.2 278 54.3
TPR.G8086 Trifolium pratense HOM05D007893 ORTHO05D010042 8.7e-44 183.0 299 40.8
Sabra01G0108300 Salix brachista HOM05D007893 ORTHO05D010042 1.1e-43 182.6 305 45.6
MSTRG.23210 Avicennia marina HOM05D007893 ORTHO05D010042 1.9e-43 181.8 280 41.8
TPR.G6545 Trifolium pratense HOM05D007893 ORTHO05D010042 2.1e-42 178.3 235 45.1
Potri.001G139300 Populus trichocarpa HOM05D007893 ORTHO05D010042 4.8e-42 177.2 297 44.8
Nn7g37761 Nelumbo nucifera HOM05D007893 ORTHO05D010042 9.0e-41 172.9 279 41.2
Cc08_g03180 Coffea canephora HOM05D007893 ORTHO05D010042 9.9e-40 169.5 283 44.2
Migut.O00264 Erythranthe guttata HOM05D007893 ORTHO05D010042 1.3e-39 169.1 282 42.6
Lj7A473T51 Lonicera japonica HOM05D007893 ORTHO05D010042 1.3e-39 169.1 309 37.5
Lj3g0001800 Lotus japonicus HOM05D007893 ORTHO05D010042 2.2e-39 168.3 277 41.5
Lj3g0011187 Lotus japonicus HOM05D007893 ORTHO05D010042 2.2e-39 168.3 277 41.5
Oeu023344.1 Olea europaea HOM05D007893 ORTHO05D010042 3.8e-39 167.5 267 37.5
Oeu023345.1 Olea europaea HOM05D007893 ORTHO05D010042 3.8e-39 167.5 267 37.5
DCAR_012172 Daucus carota HOM05D007893 ORTHO05D010042 6.4e-39 166.8 291 44.0
Nn6g33361 Nelumbo nucifera HOM05D007893 ORTHO05D010042 2.4e-38 164.9 294 42.2
Nitab4.5_0000256g0090 Nicotiana tabacum HOM05D007893 ORTHO05D010042 3.2e-38 164.5 280 39.3
Nitab4.5_0002310g0060 Nicotiana tabacum HOM05D007893 ORTHO05D010042 3.2e-38 164.5 281 39.5
SGA_v2.0_scaffold25G10745 Striga asiatica HOM05D007893 ORTHO05D010042 5.5e-38 163.7 262 38.2
Duzib068G1049 Durio zibethinus HOM05D007893 ORTHO05D010042 3.5e-37 161.0 177 61.0
Medtr5g029690 Medicago truncatula HOM05D007893 ORTHO05D010042 5.1e-36 157.1 231 42.4
Eucgr.E00255 Eucalyptus grandis HOM05D007893 ORTHO05D010042 8.7e-36 156.4 237 39.2
Dinv25240 Davidia involucrata HOM05D007893 ORTHO05D010042 1.0e-31 142.9 180 63.3
PGSC0003DMG400002555 Solanum tuberosum HOM05D007893 ORTHO05D010042 1.0e-31 142.9 227 35.7
Manes.04G148100 Manihot esculenta HOM05D007893 ORTHO05D010042 1.7e-31 142.1 299 33.4
Gohir.D08G063700 Gossypium hirsutum HOM05D007893 ORTHO05D010042 1.2e-29 136.0 180 52.2
TWI75G0531 Tripterygium wilfordii HOM05D007893 ORTHO05D010042 6.0e-29 133.7 181 43.6
TWI75G0860 Tripterygium wilfordii HOM05D007893 ORTHO05D010042 6.0e-29 133.7 181 43.6
TWI75G1402 Tripterygium wilfordii HOM05D007893 ORTHO05D010042 6.0e-29 133.7 181 43.6
TWI75G0965 Tripterygium wilfordii HOM05D007893 ORTHO05D010042 3.0e-28 131.3 181 43.1
TWI75G1888 Tripterygium wilfordii HOM05D007893 ORTHO05D010042 3.0e-28 131.3 181 43.1
ATR0680G090 Amborella trichopoda HOM05D007893 ORTHO05D010042 1.5e-24 119.0 199 33.2
Hma1.2p1_2831F.1_g329220 Hydrangea macrophylla HOM05D007893 ORTHO05D010042 2.9e-23 114.8 153 56.9
SalBow6G7259 Salvia bowleyana HOM05D007893 ORTHO05D010042 1.1e-22 112.8 178 37.6
Nitab4.5_0009549g0020 Nicotiana tabacum HOM05D007893 ORTHO05D010042 1.2e-21 109.4 284 31.3
Aqoxy4G00051 Aquilegia oxysepala HOM05D007893 ORTHO05D010042 7.9e-21 106.7 178 35.4
Nitab4.5_0005203g0030 Nicotiana tabacum HOM05D007893 ORTHO05D010042 1.3e-20 105.9 180 42.2
Zm00001eb109140 Zea mays HOM05D007893 ORTHO05D010042 8.2e-18 96.7 223 28.7
MBI18_g42841_MAGBIO Magnolia biondii HOM05D007893 ORTHO05D010042 1.1e-17 96.3 202 31.7
Sopen00g012250 Solanum pennellii HOM05D007893 ORTHO05D010042 1.7e-15 89.0 163 32.5
Peaxi162Scf00265g00033 Petunia axillaris HOM05D007893 ORTHO05D010042 2.2e-15 88.6 178 34.8
HPP92_022591 Vanilla planifolia HOM05D007893 ORTHO05D010042 8.8e-12 76.6 230 26.1
Medtr5g077270 Medicago truncatula HOM05D007893 ORTHO05D010042 1.2e-08 66.2 301 30.6
SGA_v2.0_scaffold141G35594 Striga asiatica HOM05D017480 ORTHO05D026194 2.0e-08 65.5 48 62.5
Solyc05g012920.3 Solanum lycopersicum HOM05D004824 ORTHO05D003903 7.7e-08 63.5 222 24.8
Aqoxy1G00124 Aquilegia oxysepala HOM05D004824 ORTHO05D003903 1.7e-07 62.4 194 24.2
Sed0004559 Sechium edule HOM05D004824 ORTHO05D003903 1.7e-07 62.4 138 25.4
PGSC0003DMG400028391 Solanum tuberosum HOM05D004824 ORTHO05D003903 2.2e-07 62.0 222 24.8
SGA_v2.0_scaffold484G52360 Striga asiatica HOM05D017480 ORTHO05D026194 2.2e-07 62.0 46 63.0
Solyc03g120460.4 Solanum lycopersicum HOM05D000001 ORTHO05D009971 2.9e-07 61.6 111 33.3
CANSAT11G2445 Cannabis sativa HOM05D004824 ORTHO05D003903 5.0e-07 60.8 139 24.5
SalBow6G6080 Salvia bowleyana HOM05D007893 ORTHO05D010042 5.0e-07 60.8 135 30.4
Aa31LG5G8990 Aethionema arabicum HOM05D004824 ORTHO05D003903 6.5e-07 60.5 196 23.0
MD10G1219600 Malus domestica HOM05D004824 ORTHO05D003903 6.5e-07 60.5 120 26.7
Nitab4.5_0000391g0190 Nicotiana tabacum HOM05D004824 ORTHO05D003903 6.5e-07 60.5 221 24.0
CAN.G964.21 Capsicum annuum HOM05D004824 ORTHO05D003903 8.5e-07 60.1 222 25.7
MBI06_g07794_MAGBIO Magnolia biondii HOM05D004824 ORTHO05D003903 8.5e-07 60.1 245 23.7
TWI79G0695 Tripterygium wilfordii HOM05D004824 ORTHO05D003903 1.1e-06 59.7 139 28.8
Sopen05g007720 Solanum pennellii HOM05D004824 ORTHO05D003903 1.4e-06 59.3 222 24.3
Rhsim04G0218400 Rhododendron simsii HOM05D004020 ORTHO05D004735 1.9e-06 58.9 139 25.2
HPP92_026390 Vanilla planifolia HOM05D004824 ORTHO05D003903 3.2e-06 58.2 162 21.0
BraA07t29506Z Brassica rapa HOM05D004824 ORTHO05D003903 4.2e-06 57.8 207 21.7
vmacro10360 Vaccinium macrocarpon HOM05D007426 ORTHO05D009167 5.5e-06 57.4 133 27.1


User provided reference genes

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